P14714
PR
Gene name |
PHYC (At5g35840, MIK22.15) |
Protein name |
Phytochrome C |
Names |
|
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT5G35840 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for P14714
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-P14714-F1 | Predicted | AlphaFoldDB |
102 variants for P14714
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| ENSVATH11978013 | 5 | T>S | No | 1000Genomes | |
| ENSVATH00675472 | 9 | C>Y | No | 1000Genomes | |
| ENSVATH00675473 | 27 | A>T | No | 1000Genomes | |
| ENSVATH11978036 | 44 | A>T | No | 1000Genomes | |
| ENSVATH00675474 | 46 | I>V | No | 1000Genomes | |
| tmp_5_14008220_C_T | 58 | P>S | No | 1000Genomes | |
| ENSVATH07219053 | 61 | A>V | No | 1000Genomes | |
| ENSVATH07219054 | 77 | P>T | No | 1000Genomes | |
| ENSVATH00675476 | 82 | I>V | No | 1000Genomes | |
| tmp_5_14008322_A_T | 92 | I>F | No | 1000Genomes | |
| tmp_5_14008336_A_C | 96 | E>D | No | 1000Genomes | |
| tmp_5_14008396_A_T | 116 | E>D | No | 1000Genomes | |
| ENSVATH11978040 | 119 | T>S | No | 1000Genomes | |
| tmp_5_14008434_T_A | 129 | L>Q | No | 1000Genomes | |
| ENSVATH03246905 | 137 | E>Q | No | 1000Genomes | |
| tmp_5_14008460_A_G | 138 | K>E | No | 1000Genomes | |
| tmp_5_14008499_A_G | 151 | I>V | No | 1000Genomes | |
| tmp_5_14008535_T_A | 163 | Y>N | No | 1000Genomes | |
| tmp_5_14008544_C_A | 166 | L>M | No | 1000Genomes | |
| tmp_5_14008592_C_A | 182 | P>T | No | 1000Genomes | |
| ENSVATH03246907 | 205 | R>K | No | 1000Genomes | |
| ENSVATH03246910 | 230 | G>S | No | 1000Genomes | |
| tmp_5_14008742_G_C | 232 | D>H | No | 1000Genomes | |
| ENSVATH09506188 | 233 | R>T | No | 1000Genomes | |
| ENSVATH03246911 | 249 | A>S | No | 1000Genomes | |
| ENSVATH07219060 | 251 | C>Y | No | 1000Genomes | |
| tmp_5_14008814_A_T | 256 | M>L | No | 1000Genomes | |
| tmp_5_14008916_G_A | 290 | A>T | No | 1000Genomes | |
| tmp_5_14008923_C_T | 292 | P>L | No | 1000Genomes | |
| tmp_5_14008973_G_A | 309 | G>R | No | 1000Genomes | |
| tmp_5_14008977_C_G | 310 | S>C | No | 1000Genomes | |
| tmp_5_14009066_G_T | 340 | G>C | No | 1000Genomes | |
| ENSVATH00675484 | 352 | T>S | No | 1000Genomes | |
| tmp_5_14009121_G_C | 358 | G>A | No | 1000Genomes | |
| tmp_5_14009142_C_G | 365 | A>G | No | 1000Genomes | |
| ENSVATH07219062 | 367 | P>L | No | 1000Genomes | |
| ENSVATH11978070 | 386 | G>A | No | 1000Genomes | |
| ENSVATH11978071 | 388 | Q>K | No | 1000Genomes | |
| ENSVATH11978105 | 409 | S>N | No | 1000Genomes | |
| tmp_5_14009300_A_T | 418 | N>Y | No | 1000Genomes | |
| ENSVATH03246915 | 441 | L>F | No | 1000Genomes | |
| tmp_5_14009381_G_C | 445 | D>H | No | 1000Genomes | |
| ENSVATH03246916 | 446 | N>K | No | 1000Genomes | |
| tmp_5_14009422_A_C | 458 | Q>H | No | 1000Genomes | |
| ENSVATH03246917 | 461 | D>H | No | 1000Genomes | |
| tmp_5_14009444_G_T | 466 | V>F | No | 1000Genomes | |
| tmp_5_14009457_A_C | 470 | H>P | No | 1000Genomes | |
| ENSVATH03246921 | 505 | S>T | No | 1000Genomes | |
| ENSVATH07219063 | 506 | E>Q | No | 1000Genomes | |
| ENSVATH07219064 | 519 | K>T | No | 1000Genomes | |
| ENSVATH11978108 | 531 | N>I | No | 1000Genomes | |
| tmp_5_14009647_A_C | 533 | R>S | No | 1000Genomes | |
| tmp_5_14009699_G_A | 551 | V>I | No | 1000Genomes | |
| tmp_5_14009714_G_T | 556 | V>L | No | 1000Genomes | |
| tmp_5_14009737_G_T | 563 | M>I | No | 1000Genomes | |
| tmp_5_14009796_A_G | 583 | K>R | No | 1000Genomes | |
| ENSVATH14520203 | 596 | Q>R | No | 1000Genomes | |
| tmp_5_14009861_G_A | 605 | V>M | No | 1000Genomes | |
| ENSVATH14520204 | 639 | T>I | No | 1000Genomes | |
| tmp_5_14010050_G_T | 668 | A>S | No | 1000Genomes | |
| ENSVATH11978110 | 672 | E>K | No | 1000Genomes | |
| ENSVATH11978111 | 677 | R>L | No | 1000Genomes | |
| tmp_5_14010253_A_T | 690 | R>W | No | 1000Genomes | |
| ENSVATH14520235 | 699 | V>F | No | 1000Genomes | |
| tmp_5_14010287_C_T | 701 | T>I | No | 1000Genomes | |
| ENSVATH14520236 | 720 | D>N | No | 1000Genomes | |
| tmp_5_14010346_G_T | 721 | V>F | No | 1000Genomes | |
| ENSVATH03246929 | 723 | G>D | No | 1000Genomes | |
| ENSVATH00675493 | 726 | T>K | No | 1000Genomes | |
| tmp_5_14010367_A_G | 728 | T>A | No | 1000Genomes | |
| ENSVATH00675494 | 735 | K>Q | No | 1000Genomes | |
| ENSVATH07219067 | 735 | K>R | No | 1000Genomes | |
| ENSVATH00675495 | 754 | I>M | No | 1000Genomes | |
| ENSVATH07219068 | 781 | N>D | No | 1000Genomes | |
| tmp_5_14010548_T_C | 788 | V>A | No | 1000Genomes | |
| ENSVATH07219070 | 791 | T>I | No | 1000Genomes | |
| ENSVATH03246931 | 801 | H>L | No | 1000Genomes | |
| ENSVATH11978113 | 815 | I>V | No | 1000Genomes | |
| ENSVATH03246933 | 822 | E>K | No | 1000Genomes | |
| ENSVATH07219071 | 851 | K>N | No | 1000Genomes | |
| ENSVATH11978156 | 884 | L>F | No | 1000Genomes | |
| ENSVATH07219072 | 898 | E>K | No | 1000Genomes | |
| ENSVATH07219073 | 911 | S>F | No | 1000Genomes | |
| ENSVATH07219074 | 914 | S>G | No | 1000Genomes | |
| tmp_5_14010929_A_G | 915 | E>G | No | 1000Genomes | |
| ENSVATH03246934 | 917 | Q>H | No | 1000Genomes | |
| ENSVATH11978157 | 935 | I>L | No | 1000Genomes | |
| ENSVATH00675499 | 940 | I>M | No | 1000Genomes | |
| tmp_5_14011129_A_G | 949 | E>G | No | 1000Genomes | |
| ENSVATH00675503 | 951 | D>G | No | 1000Genomes | |
| ENSVATH11978160 | 1005 | E>D | No | 1000Genomes | |
| ENSVATH07219078 | 1006 | T>S | No | 1000Genomes | |
| tmp_5_14011320_T_C | 1013 | F>L | No | 1000Genomes | |
| ENSVATH03246937 | 1017 | L>W | No | 1000Genomes | |
| ENSVATH03246938 | 1018 | R>K | No | 1000Genomes | |
| tmp_5_14011384_G_T | 1034 | G>V | No | 1000Genomes | |
| ENSVATH07219080 | 1041 | E>K | No | 1000Genomes | |
| tmp_5_14011459_G_A | 1059 | R>K | No | 1000Genomes | |
| tmp_5_14011506_G_A | 1075 | G>R | No | 1000Genomes | |
| tmp_5_14011541_G_T | 1086 | M>I | No | 1000Genomes | |
| ENSVATH11978196 | 1086 | M>L | No | 1000Genomes | |
| tmp_5_14011603_A_G | 1107 | E>G | No | 1000Genomes |
No associated diseases with P14714
13 regional properties for P14714
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | PAS domain | 604 - 730 | IPR000014-1 |
| domain | PAS domain | 737 - 860 | IPR000014-2 |
| repeat | PAC motif | 823 - 865 | IPR001610 |
| domain | GAF domain | 213 - 403 | IPR003018 |
| domain | Histidine kinase/HSP90-like ATPase | 994 - 1107 | IPR003594 |
| domain | Histidine kinase domain | 889 - 1111 | IPR005467 |
| domain | Phytochrome, central region | 406 - 580 | IPR013515 |
| binding_site | Phytochrome chromophore binding site | 313 - 322 | IPR013516 |
| domain | PAS fold-2 | 65 - 180 | IPR013654 |
| domain | PAS fold | 607 - 721 | IPR013767-1 |
| domain | PAS fold | 737 - 860 | IPR013767-2 |
| domain | Phytochrome chromophore attachment domain | 213 - 383 | IPR016132 |
| domain | Phytochrome A/B/C/D/E-like, histidine-kinase-related domain | 993 - 1108 | IPR044767 |
1 GO annotations of cellular component
| Name | Definition |
|---|---|
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
2 GO annotations of molecular function
| Name | Definition |
|---|---|
| photoreceptor activity | The function of absorbing and responding to incidental electromagnetic radiation, particularly visible light. The response may involve a change in conformation. |
| protein homodimerization activity | Binding to an identical protein to form a homodimer. |
5 GO annotations of biological process
| Name | Definition |
|---|---|
| detection of visible light | The series of events in which a visible light stimulus is received by a cell and converted into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm. |
| protein-tetrapyrrole linkage | The covalent linking of a tetrapyrrole to a protein. |
| red, far-red light phototransduction | The sequence of reactions within a cell required to convert absorbed photons from red or far-red light into a molecular signal; the red, far-red light range is defined as having a wavelength within the range 660-730 nm. |
| regulation of DNA-templated transcription | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
| response to blue light | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a blue light stimulus. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm. |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MSSNTSRSCS | TRSRQNSRVS | SQVLVDAKLH | GNFEESERLF | DYSASINLNM | PSSSCEIPSS |
| 70 | 80 | 90 | 100 | 110 | 120 |
| AVSTYLQKIQ | RGMLIQPFGC | LIVVDEKNLK | VIAFSENTQE | MLGLIPHTVP | SMEQREALTI |
| 130 | 140 | 150 | 160 | 170 | 180 |
| GTDVKSLFLS | PGCSALEKAV | DFGEISILNP | ITLHCRSSSK | PFYAILHRIE | EGLVIDLEPV |
| 190 | 200 | 210 | 220 | 230 | 240 |
| SPDEVPVTAA | GALRSYKLAA | KSISRLQALP | SGNMLLLCDA | LVKEVSELTG | YDRVMVYKFH |
| 250 | 260 | 270 | 280 | 290 | 300 |
| EDGHGEVIAE | CCREDMEPYL | GLHYSATDIP | QASRFLFMRN | KVRMICDCSA | VPVKVVQDKS |
| 310 | 320 | 330 | 340 | 350 | 360 |
| LSQPISLSGS | TLRAPHGCHA | QYMSNMGSVA | SLVMSVTING | SDSDEMNRDL | QTGRHLWGLV |
| 370 | 380 | 390 | 400 | 410 | 420 |
| VCHHASPRFV | PFPLRYACEF | LTQVFGVQIN | KEAESAVLLK | EKRILQTQSV | LCDMLFRNAP |
| 430 | 440 | 450 | 460 | 470 | 480 |
| IGIVTQSPNI | MDLVKCDGAA | LYYRDNLWSL | GVTPTETQIR | DLIDWVLKSH | GGNTGFTTES |
| 490 | 500 | 510 | 520 | 530 | 540 |
| LMESGYPDAS | VLGESICGMA | AVYISEKDFL | FWFRSSTAKQ | IKWGGARHDP | NDRDGKRMHP |
| 550 | 560 | 570 | 580 | 590 | 600 |
| RSSFKAFMEI | VRWKSVPWDD | MEMDAINSLQ | LIIKGSLQEE | HSKTVVDVPL | VDNRVQKVDE |
| 610 | 620 | 630 | 640 | 650 | 660 |
| LCVIVNEMVR | LIDTAAVPIF | AVDASGVING | WNSKAAEVTG | LAVEQAIGKP | VSDLVEDDSV |
| 670 | 680 | 690 | 700 | 710 | 720 |
| ETVKNMLALA | LEGSEERGAE | IRIRAFGPKR | KSSPVELVVN | TCCSRDMTNN | VLGVCFIGQD |
| 730 | 740 | 750 | 760 | 770 | 780 |
| VTGQKTLTEN | YSRVKGDYAR | IMWSPSTLIP | PIFITNENGV | CSEWNNAMQK | LSGIKREEVV |
| 790 | 800 | 810 | 820 | 830 | 840 |
| NKILLGEVFT | TDDYGCCLKD | HDTLTKLRIG | FNAVISGQKN | IEKLLFGFYH | RDGSFIEALL |
| 850 | 860 | 870 | 880 | 890 | 900 |
| SANKRTDIEG | KVTGVLCFLQ | VPSPELQYAL | QVQQISEHAI | ACALNKLAYL | RHEVKDPEKA |
| 910 | 920 | 930 | 940 | 950 | 960 |
| ISFLQDLLHS | SGLSEDQKRL | LRTSVLCREQ | LAKVISDSDI | EGIEEGYVEL | DCSEFGLQES |
| 970 | 980 | 990 | 1000 | 1010 | 1020 |
| LEAVVKQVME | LSIERKVQIS | CDYPQEVSSM | RLYGDNLRLQ | QILSETLLSS | IRFTPALRGL |
| 1030 | 1040 | 1050 | 1060 | 1070 | 1080 |
| CVSFKVIARI | EAIGKRMKRV | ELEFRIIHPA | PGLPEDLVRE | MFQPLRKGTS | REGLGLHITQ |
| 1090 | 1100 | 1110 | |||
| KLVKLMERGT | LRYLRESEMS | AFVILTEFPL | I |