P13639
Gene name |
EEF2 (EF2) |
Protein name |
Elongation factor 2 |
Names |
EF-2 |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:1938 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
545 variants for P13639
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
CA9089235 RCV000711588 RCV002534497 rs773181804 |
213 | G>C | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
CA264797 RCV000056312 VAR_070792 rs587777052 RCV001288169 |
596 | P>H | Spinocerebellar ataxia type 26 SCA26; compromises the mechanics of translocation [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl dbSNP |
|
RCV000509395 rs945307250 CA304442033 |
660 | N>S | Spinocerebellar ataxia type 26 [ClinVar] | Yes |
ClinGen ClinVar dbSNP gnomAD |
|
CA9089558 rs748401411 |
6 | V>G | No |
ClinGen ExAC gnomAD |
|
|
rs1259288991 CA403395824 |
10 | R>C | No |
ClinGen gnomAD |
|
|
rs1275840247 CA403395820 |
11 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs1334094020 CA403395815 |
11 | A>V | No |
ClinGen TOPMed |
|
|
rs780490428 CA9089554 |
14 | D>E | No |
ClinGen ExAC gnomAD |
|
|
CA9089555 rs747080912 |
14 | D>G | No |
ClinGen ExAC gnomAD |
|
|
rs1568203209 CA403395776 |
17 | A>T | No |
ClinGen Ensembl |
|
|
CA304445737 rs913037732 |
18 | N>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1357064020 CA9089548 |
22 | M>I | No |
ClinGen gnomAD |
|
| TCGA novel | 23 | S>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA403395718 rs1599198862 |
25 | I>T | No |
ClinGen Ensembl |
|
| TCGA novel | 26 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA403395701 rs1457846454 |
28 | V>M | No |
ClinGen TOPMed |
|
|
rs759476297 CA9089542 |
34 | T>M | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 35 | L>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 37 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 40 | V>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA9089537 rs768918548 RCV000711572 |
43 | A>V | No |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
|
rs1392845115 CA403395590 |
45 | I>V | No |
ClinGen gnomAD |
|
| TCGA novel | 46 | I>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs147888450 CA9089530 |
47 | A>S | No |
ClinGen ESP ExAC gnomAD |
|
|
CA9089531 rs147888450 |
47 | A>T | No |
ClinGen ESP ExAC gnomAD |
|
|
rs1407899802 CA403395569 |
48 | S>L | No |
ClinGen gnomAD |
|
|
CA9089529 rs763716497 |
48 | S>P | No |
ClinGen ExAC gnomAD |
|
|
rs1456305040 CA403395566 |
49 | A>S | No |
ClinGen gnomAD |
|
|
rs1599198761 CA403395562 |
50 | R>W | No |
ClinGen Ensembl |
|
|
rs76914868 CA9089524 |
52 | G>E | No |
ClinGen ESP ExAC gnomAD |
|
|
rs762801377 CA9089522 |
53 | E>A | No |
ClinGen ExAC gnomAD |
|
|
CA403395500 rs1599198731 |
59 | T>N | No |
ClinGen Ensembl |
|
|
rs769417606 CA9089520 |
60 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1211108246 CA403395491 |
61 | K>R | No |
ClinGen TOPMed |
|
|
CA403395480 rs142852560 |
62 | D>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9089517 rs772297081 |
64 | Q>E | No |
ClinGen ExAC gnomAD |
|
|
CA403395471 rs772297081 |
64 | Q>K | No |
ClinGen ExAC gnomAD |
|
|
CA304445679 rs769829386 |
66 | R>H | No |
ClinGen Ensembl |
|
|
rs1307786535 CA403395358 |
79 | Y>C | No |
ClinGen gnomAD |
|
|
CA403395362 rs1349228791 |
79 | Y>H | No |
ClinGen gnomAD |
|
|
rs35967493 CA304445113 |
80 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA304445111 rs905404443 |
81 | L>F | No |
ClinGen gnomAD |
|
|
CA304445100 rs946697377 |
82 | S>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs946697377 CA403395339 |
82 | S>W | No |
ClinGen TOPMed gnomAD |
|
|
CA9089470 rs779082919 |
83 | E>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs768940783 CA403395338 |
83 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9089471 rs768940783 |
83 | E>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9089469 rs779629505 |
84 | N>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs757973824 CA403395303 |
87 | N>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA403395297 rs1298495113 |
88 | F>C | No |
ClinGen TOPMed |
|
|
CA403395301 rs1421153734 |
88 | F>L | No |
ClinGen TOPMed |
|
| TCGA novel | 88 | F>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA403395287 rs1252151598 |
90 | K>Q | No |
ClinGen gnomAD |
|
|
rs935375368 CA304445082 |
92 | S>T | No |
ClinGen Ensembl |
|
|
rs922729998 CA304445077 |
93 | K>R | No |
ClinGen TOPMed |
|
|
CA9089466 rs778970489 |
94 | D>H | No |
ClinGen ExAC gnomAD |
|
|
CA9089463 rs764015216 |
95 | G>D | No |
ClinGen ExAC gnomAD |
|
|
CA9089464 rs145985140 RCV000516794 |
95 | G>S | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA403395242 rs1288347794 |
96 | A>G | No |
ClinGen gnomAD |
|
|
rs1242396370 CA403395244 |
96 | A>S | No |
ClinGen TOPMed |
|
|
rs1568202558 CA403395240 |
97 | G>S | No |
ClinGen Ensembl |
|
|
rs11544962 CA304445055 |
98 | F>L | No |
ClinGen Ensembl |
|
|
CA403395220 rs1395702933 |
100 | I>V | No |
ClinGen gnomAD |
|
|
rs2230560 CA304445042 CA304445043 |
108 | H>Q | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA403395148 rs747348346 |
110 | D>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1222211516 CA403395093 |
119 | L>F | No |
ClinGen TOPMed |
|
|
rs771613145 CA9089451 |
120 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
rs778295378 CA9089449 |
123 | D>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
| TCGA novel | 124 | G>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 133 | S>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA403394976 rs1599197491 |
136 | C>R | No |
ClinGen Ensembl |
|
| TCGA novel | 139 | T>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs138510259 CA403394929 |
143 | L>M | No |
ClinGen ESP TOPMed gnomAD |
|
|
CA9089404 rs781134740 |
144 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
rs1273667340 CA403394923 |
144 | R>W | No |
ClinGen gnomAD |
|
|
CA403394912 rs1480515390 |
146 | A>T | No |
ClinGen gnomAD |
|
|
rs746784291 CA9089402 |
147 | I>V | No |
ClinGen ExAC gnomAD |
|
|
rs1194808384 CA403394884 |
150 | R>C | No |
ClinGen TOPMed |
|
|
rs1474685941 CA403394879 |
151 | I>V | No |
ClinGen TOPMed |
|
|
CA403394869 rs1324170947 |
152 | K>R | No |
ClinGen TOPMed gnomAD |
|
|
rs1324170947 CA403394870 |
152 | K>T | No |
ClinGen TOPMed gnomAD |
|
|
rs1568202356 CA403394864 |
153 | P>A | No |
ClinGen Ensembl |
|
|
rs777864719 CA9089398 |
154 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9089395 rs199983367 |
155 | L>M | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs755365555 CA9089394 |
156 | M>T | No |
ClinGen ExAC gnomAD |
|
|
rs751940798 CA9089393 |
160 | M>L | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 162 | R>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA403394748 CA403394747 rs1242828255 |
170 | E>D | No |
ClinGen TOPMed gnomAD |
|
|
rs776469575 CA9089387 |
170 | E>V | No |
ClinGen ExAC gnomAD |
|
|
CA304444879 rs867147095 |
171 | P>L | No |
ClinGen Ensembl |
|
|
CA9089384 rs775275364 |
176 | Q>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA304444870 rs1018018935 |
177 | T>N | No |
ClinGen TOPMed |
|
|
CA403394695 rs771817071 |
178 | F>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9089383 rs771817071 |
178 | F>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA403394696 rs771817071 |
178 | F>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9089381 rs777953220 |
180 | R>C | No |
ClinGen ExAC |
|
|
CA403394682 rs1225307809 |
180 | R>H | No |
ClinGen gnomAD |
|
|
rs202047073 CA403394673 |
181 | I>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA403394678 rs1391621336 |
181 | I>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1339774480 CA403394668 |
182 | V>A | No |
ClinGen TOPMed |
|
|
CA403394672 rs1335681785 |
182 | V>M | No |
ClinGen gnomAD |
|
|
CA403394658 rs1407692769 |
184 | N>D | No |
ClinGen gnomAD |
|
|
rs143380902 CA9089378 |
184 | N>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA403394651 rs1346359523 |
185 | V>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs752043513 CA9089376 COSM1578585 |
188 | I>V | ovary meninges [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
rs758785964 CA9089374 |
190 | S>C | No |
ClinGen ExAC gnomAD |
|
|
CA9089372 rs764947324 |
191 | T>A | No |
ClinGen ExAC gnomAD |
|
|
CA9089371 rs761292583 |
191 | T>S | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 192 | Y>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1181853415 CA403394608 |
192 | Y>D | No |
ClinGen TOPMed |
|
|
CA9089368 rs374265147 |
193 | G>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs868852146 CA304444844 |
195 | G>V | No |
ClinGen Ensembl |
|
|
rs1381219734 CA403394543 |
201 | G>D | No |
ClinGen gnomAD |
|
|
CA403394539 rs1291154435 |
202 | N>D | No |
ClinGen gnomAD |
|
|
CA403394532 rs1365378061 |
203 | I>L | No |
ClinGen TOPMed gnomAD |
|
|
rs748262743 CA9089362 |
203 | I>N | No |
ClinGen ExAC gnomAD |
|
|
rs748262743 CA9089363 |
203 | I>T | No |
ClinGen ExAC gnomAD |
|
|
CA403394531 rs1365378061 |
203 | I>V | No |
ClinGen TOPMed gnomAD |
|
| rs375130935 | 205 | I>= | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA403394508 rs1265400084 |
205 | I>V | No |
ClinGen Ensembl |
|
|
rs761077335 CA9089241 |
206 | D>E | No |
ClinGen ExAC gnomAD |
|
|
rs1480423793 CA403394501 |
206 | D>N | No |
ClinGen gnomAD |
|
| TCGA novel | 207 | P>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1460050094 CA403394480 |
209 | L>F | No |
ClinGen gnomAD |
|
|
CA403394465 rs1202995707 |
211 | T>I | No |
ClinGen gnomAD |
|
|
CA9089236 rs140609362 |
212 | V>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9089234 rs773181804 |
213 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 215 | G>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA403394427 rs1381589253 |
218 | L>F | No |
ClinGen TOPMed |
|
| TCGA novel | 219 | H>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA403394366 rs1445730304 |
227 | Q>E | No |
ClinGen TOPMed |
|
|
CA304443495 rs868370312 |
229 | A>V | No |
ClinGen Ensembl |
|
|
COSM439463 CA9089228 rs778994144 |
230 | E>K | Variant assessed as Somatic; 0.0 impact. breast [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
CA403394335 rs1361469834 |
231 | M>K | No |
ClinGen gnomAD |
|
| TCGA novel | 234 | A>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs368547225 CA304443494 |
237 | A>T | No |
ClinGen ESP TOPMed |
|
|
rs575523824 CA9089223 |
238 | A>P | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs575523824 CA9089225 |
238 | A>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs575523824 RCV001288960 CA9089224 |
238 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ClinVar 1000Genomes ExAC NCI-TCGA TOPMed dbSNP gnomAD |
|
CA304443493 rs755344784 |
239 | K>N | No |
ClinGen gnomAD |
|
|
rs1257689905 CA403394275 |
240 | G>E | No |
ClinGen gnomAD |
|
|
rs1483533062 CA403394278 |
240 | G>R | No |
ClinGen gnomAD |
|
|
rs1311053257 CA403394272 |
241 | E>Q | No |
ClinGen TOPMed |
|
|
rs1316143008 CA403394261 |
242 | G>D | No |
ClinGen gnomAD |
|
|
rs994892680 CA304443492 |
246 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
rs1241825712 CA403394236 |
246 | P>S | No |
ClinGen gnomAD |
|
|
CA9089216 RCV000991951 rs769755490 |
249 | R>Q | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
rs200792022 CA9089217 |
249 | R>W | No |
ClinGen ExAC gnomAD |
|
|
CA9089215 rs371684656 |
251 | K>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 251 | K>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA403394193 rs1460956400 |
253 | V>L | No |
ClinGen TOPMed |
|
| TCGA novel | 254 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1418745859 CA403394177 |
255 | D>G | No |
ClinGen TOPMed gnomAD |
|
|
CA403394181 rs1201826649 |
255 | D>N | No |
ClinGen TOPMed |
|
|
CA403394169 rs1187452219 |
256 | M>T | No |
ClinGen TOPMed gnomAD |
|
|
CA403394171 rs1180823908 |
256 | M>V | No |
ClinGen TOPMed |
|
| TCGA novel | 258 | K>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1050981301 CA304443489 |
258 | K>M | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 259 | K>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA403394114 rs746110330 |
263 | D>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
RCV001288961 rs1599196364 CA403394119 |
263 | D>H | No |
ClinGen ClinVar Ensembl dbSNP |
|
|
rs1202470888 CA403394076 |
267 | D>N | No |
ClinGen TOPMed |
|
|
rs986172650 CA304443456 |
268 | P>A | No |
ClinGen TOPMed |
|
|
CA9089165 rs769297557 |
268 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9089163 rs780592141 |
270 | N>D | No |
ClinGen ExAC gnomAD |
|
|
CA403394056 rs1260504687 |
270 | N>T | No |
ClinGen gnomAD |
|
|
CA9089160 rs778399503 |
271 | G>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs200480185 RCV000518744 CA9089161 |
271 | G>S | No |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
| rs761907521 | 274 | S>missing | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1334138285 CA403394030 |
274 | S>G | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA9089158 rs753331233 |
274 | S>N | No |
ClinGen ExAC gnomAD |
|
|
rs1402588341 CA403394006 |
277 | A>G | No |
ClinGen TOPMed gnomAD |
|
|
rs1402588341 CA403394005 |
277 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
CA403393999 rs1357678352 |
278 | T>I | No |
ClinGen TOPMed |
|
|
rs1357678352 CA403394001 |
278 | T>N | No |
ClinGen TOPMed |
|
|
CA304443454 rs142197125 |
279 | S>I | No |
ClinGen ESP |
|
|
rs1001215525 CA304443453 |
280 | P>S | No |
ClinGen Ensembl |
|
|
rs1599196003 CA403393980 |
281 | E>D | No |
ClinGen Ensembl |
|
|
rs752584316 CA9089154 |
281 | E>K | Variant assessed as Somatic; 0.0001848 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA403393959 rs1467400439 |
284 | K>N | No |
ClinGen gnomAD |
|
|
CA304443452 rs1021263871 |
285 | L>V | No |
ClinGen TOPMed |
|
|
CA403393945 rs1285177919 COSM996258 |
287 | R>C | Variant assessed as Somatic; impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed |
|
rs767351133 COSM1392715 CA9089153 |
287 | R>H | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
rs762033938 CA9089150 |
289 | F>L | No |
ClinGen ExAC gnomAD |
|
|
CA304443451 rs1042417250 |
290 | C>Y | No |
ClinGen TOPMed |
|
|
rs776852165 CA9089148 |
291 | Q>* | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 293 | I>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1204833430 CA403393901 |
294 | L>P | No |
ClinGen TOPMed |
|
|
rs776117145 CA9089145 |
294 | L>V | No |
ClinGen ExAC gnomAD |
|
|
rs1231921301 CA403393894 |
295 | D>A | No |
ClinGen TOPMed |
|
|
CA403393895 rs1231921301 |
295 | D>G | No |
ClinGen TOPMed |
|
|
rs1349012792 CA403393898 |
295 | D>H | No |
ClinGen gnomAD |
|
| TCGA novel | 297 | I>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs746214723 CA403393885 |
297 | I>L | No |
ClinGen ExAC gnomAD |
|
|
rs746214723 CA9089143 |
297 | I>V | No |
ClinGen ExAC gnomAD |
|
|
rs1241109182 CA403393877 |
298 | F>V | No |
ClinGen TOPMed gnomAD |
|
|
rs375845489 CA9089091 |
301 | F>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1292653320 CA403393834 |
302 | D>V | No |
ClinGen TOPMed |
|
|
CA9089088 rs766860935 |
303 | A>S | No |
ClinGen ExAC gnomAD |
|
|
CA9089087 rs763395759 |
303 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1218500287 CA403393821 |
304 | I>M | No |
ClinGen gnomAD |
|
|
CA9089086 rs773575375 |
305 | M>I | No |
ClinGen ExAC gnomAD |
|
|
rs770108129 CA403393790 |
308 | K>N | No |
ClinGen ExAC gnomAD |
|
|
rs761390695 CA9089084 |
309 | K>E | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 309 | K>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA9089082 rs746522609 |
310 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA304443328 rs763301574 |
311 | E>K | No |
ClinGen gnomAD |
|
|
rs779911792 CA9089080 |
312 | T>I | No |
ClinGen ExAC gnomAD |
|
|
rs772147848 CA9089079 |
313 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs757096142 CA9089076 |
316 | I>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9089074 rs781473441 |
316 | I>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9089075 rs372856139 |
316 | I>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs372856139 CA304443327 |
316 | I>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs757096142 CA9089077 |
316 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 317 | E>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA403393714 rs949353398 |
320 | D>E | No |
ClinGen TOPMed gnomAD |
|
|
rs1162827667 CA403393708 |
321 | I>M | No |
ClinGen Ensembl |
|
|
CA9089072 rs201085536 |
321 | I>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA403393685 rs1225437593 |
325 | S>G | No |
ClinGen gnomAD |
|
|
rs374213686 CA9089070 |
325 | S>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA403393679 rs1288346216 |
326 | E>K | No |
ClinGen TOPMed |
|
|
rs762204921 CA304443325 |
327 | D>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9089068 rs773614862 |
327 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs776210947 CA9089066 |
328 | K>E | No |
ClinGen ExAC gnomAD |
|
|
CA9089065 rs760185296 |
328 | K>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9089063 rs372507236 |
329 | D>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1161455051 CA403393622 |
334 | P>S | No |
ClinGen TOPMed |
|
|
CA403393615 rs984506740 |
335 | L>V | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 337 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA304443249 rs866096212 |
338 | A>D | No |
ClinGen TOPMed gnomAD |
|
|
CA403393585 rs866096212 |
338 | A>G | No |
ClinGen TOPMed gnomAD |
|
|
CA304443248 rs866753926 |
339 | V>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
|
CA304443247 rs865999686 |
341 | R>C | No |
ClinGen Ensembl |
|
|
CA304443246 rs532030743 |
342 | R>H | No |
ClinGen TOPMed gnomAD |
|
|
CA304443245 rs532030743 |
342 | R>L | No |
ClinGen TOPMed gnomAD |
|
|
rs1195076460 CA403393553 |
343 | W>* | No |
ClinGen gnomAD |
|
|
rs954698756 CA304443243 |
345 | P>L | No |
ClinGen Ensembl |
|
|
CA304443244 rs377613989 |
345 | P>S | No |
ClinGen ESP TOPMed gnomAD |
|
| TCGA novel | 348 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA304443242 rs964727190 |
349 | A>T | No |
ClinGen gnomAD |
|
|
rs1302306017 CA403393499 |
352 | Q>R | No |
ClinGen TOPMed gnomAD |
|
|
rs1388562626 CA403393491 |
353 | M>T | No |
ClinGen gnomAD |
|
|
CA9089026 rs114174651 |
354 | I>M | No |
ClinGen 1000Genomes ExAC gnomAD |
|
| TCGA novel | 359 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs980260154 RCV001644601 CA304443241 |
363 | T>M | No |
ClinGen ClinVar TOPMed dbSNP gnomAD |
|
|
rs765769458 CA9089021 |
366 | K>Q | No |
ClinGen ExAC gnomAD |
|
|
CA403393379 rs1251310901 |
370 | E>A | No |
ClinGen TOPMed |
|
|
CA9089018 rs373110188 |
370 | E>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9089017 rs761587913 |
371 | L>F | No |
ClinGen ExAC gnomAD |
|
|
rs1599194336 CA403393366 |
372 | L>R | No |
ClinGen Ensembl |
|
|
rs772293215 CA9089015 |
374 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA304443239 rs868686821 |
376 | P>S | No |
ClinGen Ensembl |
|
|
CA304443238 rs994460769 |
377 | P>A | No |
ClinGen Ensembl |
|
|
CA403393336 rs1377534088 |
377 | P>L | Variant assessed as Somatic; 0.0001501 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs779080764 CA9089013 |
378 | D>G | No |
ClinGen ExAC |
|
|
rs1435105012 CA403393327 |
379 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
CA304443237 rs897230586 |
381 | A>S | No |
ClinGen TOPMed gnomAD |
|
|
rs897230586 CA403393311 |
381 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
rs1436128211 CA403393307 |
381 | A>V | No |
ClinGen gnomAD |
|
|
CA403393295 rs1157517061 |
383 | M>I | No |
ClinGen gnomAD |
|
|
rs778139893 CA9089010 |
383 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1439827287 RCV001288163 |
384 | G>C | No |
ClinVar dbSNP |
|
|
rs1439827287 CA403393292 |
384 | G>S | No |
ClinGen gnomAD |
|
|
CA403393274 rs1311584123 |
385 | I>V | No |
ClinGen TOPMed |
|
|
rs1229015129 CA403393257 |
387 | S>T | No |
ClinGen TOPMed |
|
| TCGA novel | 388 | C>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs762878861 CA9088974 |
390 | P>A | No |
ClinGen ExAC gnomAD |
|
|
RCV000499588 CA403393234 rs763170059 |
390 | P>L | No |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
|
CA9088973 rs763170059 |
390 | P>R | No |
ClinGen ExAC gnomAD |
|
|
rs762878861 CA9088975 |
390 | P>S | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 393 | P>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs748717359 CA9088970 |
393 | P>L | No |
ClinGen ExAC gnomAD |
|
|
CA403393217 rs1279122963 |
393 | P>S | No |
ClinGen TOPMed |
|
|
CA9088969 rs777250927 |
395 | M>T | No |
ClinGen ExAC gnomAD |
|
|
CA9088968 rs769205803 |
398 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA403393150 rs1253814799 |
402 | V>A | No |
ClinGen TOPMed |
|
|
rs895700162 CA304443221 |
403 | P>A | No |
ClinGen Ensembl |
|
|
CA403393139 rs1400213852 |
404 | T>I | No |
ClinGen gnomAD |
|
|
CA403393119 rs1180414897 |
407 | K>R | No |
ClinGen TOPMed |
|
|
CA9088962 rs756738121 |
408 | G>A | No |
ClinGen ExAC gnomAD |
|
|
rs756021267 CA9088959 |
411 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
CA9088957 rs767301283 |
412 | A>T | No |
ClinGen ExAC gnomAD |
|
|
CA9088955 rs750633772 |
414 | G>A | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 415 | R>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA9088952 RCV000711571 CA403393055 rs777339030 |
417 | F>L | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
rs1444018681 CA403393041 |
420 | L>V | No |
ClinGen gnomAD |
|
|
rs1299287459 CA403393037 |
421 | V>L | No |
ClinGen gnomAD |
|
|
rs772435234 CA9088948 |
430 | M>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA403392916 rs1415190605 |
430 | M>V | No |
ClinGen gnomAD |
|
|
rs778507336 CA9088946 |
433 | N>S | No |
ClinGen ExAC gnomAD |
|
|
rs913001998 CA304443218 |
434 | Y>C | No |
ClinGen TOPMed |
|
|
CA403392818 rs1379577842 |
435 | T>I | No |
ClinGen gnomAD |
|
|
rs150273974 CA9088944 |
436 | P>A | No |
ClinGen ESP ExAC gnomAD |
|
|
rs150273974 CA9088945 |
436 | P>S | No |
ClinGen ESP ExAC gnomAD |
|
| rs1195137689 | 439 | K>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA9088942 rs756036052 |
442 | L>F | No |
ClinGen ExAC gnomAD |
|
|
rs1214326179 CA403392689 |
443 | Y>C | No |
ClinGen TOPMed gnomAD |
|
|
rs1214326179 CA403392686 |
443 | Y>S | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 445 | K>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs754768486 CA9088939 |
445 | K>R | No |
ClinGen ExAC gnomAD |
|
|
rs1372164303 CA403392402 |
451 | I>M | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 456 | R>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1431117186 CA403392327 |
456 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs1431117186 CA403392325 |
456 | R>L | No |
ClinGen gnomAD |
|
|
rs746994331 CA9088884 |
463 | D>E | No |
ClinGen ExAC gnomAD |
|
|
rs775538823 CA9088883 |
464 | V>L | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 465 | P>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 466 | C>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 468 | N>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1258066940 CA403392236 |
469 | I>T | No |
ClinGen TOPMed |
|
|
CA403392240 rs1213006336 COSM3388978 |
469 | I>V | pancreas [Cosmic] | No |
ClinGen cosmic curated TOPMed |
|
CA403392200 rs1185106152 |
475 | V>A | No |
ClinGen TOPMed |
|
|
CA9088880 COSM178836 rs778505808 |
482 | T>M | large_intestine Variant assessed as Somatic; 0.0002311 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA403392143 rs1418195834 |
484 | T>A | No |
ClinGen TOPMed |
|
|
CA9088877 rs781379401 |
484 | T>I | No |
ClinGen ExAC gnomAD |
|
|
CA9088876 rs200110903 |
485 | I>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA403392133 rs1394167369 |
486 | T>A | No |
ClinGen gnomAD |
|
| TCGA novel | 487 | T>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA403392120 rs1455229788 |
488 | F>I | No |
ClinGen gnomAD |
|
|
CA403392100 rs1181662589 |
490 | H>L | No |
ClinGen gnomAD |
|
|
rs1265419611 CA403392075 |
494 | M>L | No |
ClinGen gnomAD |
|
|
rs1599193329 CA403392066 |
495 | R>G | No |
ClinGen Ensembl |
|
|
CA403392059 rs1279172488 |
496 | V>L | No |
ClinGen TOPMed |
|
|
rs1346998753 CA403392022 |
501 | V>I | No |
ClinGen TOPMed |
|
|
rs763738662 CA9088868 |
505 | V>L | No |
ClinGen ExAC gnomAD |
|
|
rs1274585006 CA403391984 |
507 | V>L | No |
ClinGen TOPMed |
|
|
rs76252955 CA304443134 |
509 | V>G | No |
ClinGen Ensembl |
|
|
rs199771838 CA304443133 |
510 | E>G | No |
ClinGen Ensembl |
|
|
CA403391958 rs1308649928 |
511 | A>S | No |
ClinGen gnomAD |
|
|
CA403391932 rs1336282278 |
515 | A>P | No |
ClinGen gnomAD |
|
|
rs1226577835 CA403391902 |
519 | K>M | No |
ClinGen gnomAD |
|
|
rs1599193239 CA403391889 |
521 | V>G | No |
ClinGen Ensembl |
|
| TCGA novel | 522 | E>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1436227087 CA403391879 |
523 | G>R | No |
ClinGen gnomAD |
|
|
rs374419016 CA9088860 |
526 | R>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9088861 rs748441671 |
526 | R>W | No |
ClinGen ExAC gnomAD |
|
|
CA9088859 rs768779131 |
528 | A>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9088858 rs747100966 |
529 | K>Q | No |
ClinGen ExAC gnomAD |
|
|
CA9088857 rs780038811 |
530 | S>T | No |
ClinGen ExAC |
|
|
CA9088817 rs771347280 |
538 | I>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA403391700 rs1253602883 |
538 | I>T | No |
ClinGen gnomAD |
|
|
rs749773906 CA9088814 |
541 | S>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs747874700 CA9088812 |
545 | I>V | No |
ClinGen ExAC gnomAD |
|
|
rs780692447 CA9088811 |
547 | A>T | No |
ClinGen ExAC gnomAD |
|
|
CA9088810 rs754598854 |
547 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA403391570 rs1200259068 |
548 | G>C | No |
ClinGen gnomAD |
|
|
rs1343437940 CA403391559 |
549 | A>S | No |
ClinGen gnomAD |
|
|
CA403391550 rs1447645074 |
550 | G>S | No |
ClinGen TOPMed |
|
| TCGA novel | 555 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA403391475 rs1239066507 |
556 | I>V | No |
ClinGen gnomAD |
|
|
rs1232025372 CA403391399 |
562 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
CA403391383 rs1312005011 |
563 | E>G | No |
ClinGen gnomAD |
|
| TCGA novel | 563 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs749851802 CA9088798 |
566 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs867330013 CA304443046 |
567 | C>Y | No |
ClinGen Ensembl |
|
|
rs773849734 RCV000996716 CA9088797 |
568 | I>V | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
CA403391302 rs1159137782 |
569 | P>L | No |
ClinGen gnomAD |
|
|
CA403391282 rs1347917447 |
571 | K>E | No |
ClinGen gnomAD |
|
|
CA403391178 rs1599191355 |
574 | D>A | No |
ClinGen Ensembl |
|
|
CA403391176 rs766965840 |
574 | D>E | No |
ClinGen TOPMed gnomAD |
|
|
rs1234344799 CA403391163 |
577 | V>I | No |
ClinGen gnomAD |
|
|
rs1016486852 COSM1481030 CA304442130 |
580 | R>C | Variant assessed as Somatic; 0.0 impact. pancreas breast [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
|
rs1290721944 CA403391114 |
584 | S>T | No |
ClinGen gnomAD |
|
|
rs755931480 CA9088765 |
586 | E>G | No |
ClinGen ExAC gnomAD |
|
|
rs1461807060 CA403391090 |
587 | S>L | No |
ClinGen gnomAD |
|
|
rs763197514 CA403391082 |
588 | N>K | No |
ClinGen ExAC gnomAD |
|
|
CA403391080 CA403391081 rs35987350 |
589 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs35987350 CA9088761 |
589 | V>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA403391074 rs1187833473 |
590 | L>F | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA403391067 rs1252976582 |
591 | C>Y | No |
ClinGen gnomAD |
|
|
RCV000677282 rs1555683985 CA403391037 |
595 | S>F | No |
ClinGen ClinVar Ensembl dbSNP |
|
|
CA403391034 rs1226896784 |
596 | P>S | No |
ClinGen gnomAD |
|
|
rs966389526 CA304442113 |
603 | Y>H | No |
ClinGen TOPMed gnomAD |
|
|
rs768970441 CA9088757 |
604 | M>V | No |
ClinGen ExAC gnomAD |
|
|
CA403390964 rs1472010741 |
606 | A>S | No |
ClinGen gnomAD |
|
|
CA403390963 rs1238638025 |
606 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
CA9088755 rs149757304 |
607 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs1441576483 COSM178835 CA403390959 |
607 | R>W | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
rs1020646538 CA304442107 |
609 | F>L | No |
ClinGen Ensembl |
|
|
rs1599191218 CA403390946 |
609 | F>S | No |
ClinGen Ensembl |
|
|
rs375212891 CA403390932 |
611 | D>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA304442104 rs1007902036 |
611 | D>N | No |
ClinGen TOPMed gnomAD |
|
|
rs773875633 CA9088752 |
612 | G>A | No |
ClinGen ExAC gnomAD |
|
|
CA403390927 rs773875633 |
612 | G>D | No |
ClinGen ExAC gnomAD |
|
|
CA304442095 rs377744684 |
615 | E>K | No |
ClinGen ESP TOPMed gnomAD |
|
|
CA304442093 rs997431543 |
617 | I>T | No |
ClinGen TOPMed |
|
|
CA9088748 rs755946485 |
618 | D>N | No |
ClinGen ExAC |
|
|
rs750648849 CA9088744 |
623 | S>F | No |
ClinGen ExAC gnomAD |
|
|
rs757356247 CA403390853 |
624 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9088742 rs757356247 |
624 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs754364920 CA9088741 |
625 | R>C | No |
ClinGen ExAC |
|
|
rs980995029 CA304442079 |
626 | Q>* | No |
ClinGen TOPMed |
|
|
rs145009005 CA304442076 |
627 | E>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA403390813 rs1599191139 |
630 | Q>E | No |
ClinGen Ensembl |
|
|
rs1599191134 CA403390812 |
630 | Q>P | No |
ClinGen Ensembl |
|
|
CA9088737 rs201976284 |
631 | R>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA |
|
CA403390803 rs1390940950 |
632 | A>T | No |
ClinGen TOPMed |
|
|
rs773988050 CA9088735 |
632 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA403390773 rs1173722167 |
636 | A>V | No |
ClinGen gnomAD |
|
|
CA403390770 rs1432232421 |
637 | E>A | No |
ClinGen TOPMed |
|
|
CA403390769 rs1432232421 |
637 | E>G | No |
ClinGen TOPMed |
|
|
CA9088728 rs754786270 |
637 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs779267368 CA9088726 |
638 | K>T | No |
ClinGen ExAC gnomAD |
|
|
CA9088723 rs764042018 |
640 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1281127382 CA403390731 |
642 | D>G | No |
ClinGen gnomAD |
|
|
rs753183188 CA9088721 |
643 | V>M | No |
ClinGen ExAC gnomAD |
|
|
rs1599191067 CA403390721 |
644 | A>T | No |
ClinGen Ensembl |
|
|
RCV000518145 CA304442053 rs200589086 |
644 | A>V | No |
ClinGen ClinVar Ensembl dbSNP |
|
|
CA403390703 rs1258931189 |
646 | A>G | No |
ClinGen gnomAD |
|
|
rs867219501 CA304442048 |
647 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs1599191044 CA403390702 |
647 | R>S | No |
ClinGen Ensembl |
|
|
rs774639089 CA9088718 |
649 | I>F | No |
ClinGen ExAC gnomAD |
|
|
CA9088715 rs772796691 COSM996246 |
656 | G>S | Variant assessed as Somatic; 4.652e-05 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA304442038 rs142731069 |
657 | T>S | No |
ClinGen ESP TOPMed |
|
|
rs1454775764 CA403390625 |
658 | G>D | No |
ClinGen gnomAD |
|
|
rs1327857745 CA403390628 |
658 | G>S | No |
ClinGen gnomAD |
|
|
rs979345487 CA304442035 |
659 | P>A | No |
ClinGen TOPMed |
|
|
rs1474997362 CA403390608 |
661 | I>F | No |
ClinGen gnomAD |
|
| TCGA novel | 661 | I>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 665 | I>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1302737668 CA403390582 |
665 | I>V | No |
ClinGen TOPMed |
|
|
rs144336814 CA9088707 |
673 | N>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1231286361 CA403390489 |
678 | S>G | No |
ClinGen gnomAD |
|
|
rs1293488212 CA403390465 |
681 | A>V | No |
ClinGen gnomAD |
|
|
rs781672509 CA9088703 |
685 | W>L | No |
ClinGen ExAC gnomAD |
|
|
CA403390427 rs751952139 |
687 | T>P | No |
ClinGen ExAC gnomAD |
|
|
rs751952139 CA9088701 |
687 | T>S | No |
ClinGen ExAC gnomAD |
|
| rs748319866 | 690 | G>= | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA9088668 rs776736515 |
691 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9088667 rs375866867 |
691 | A>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 695 | E>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA403390355 rs1468376389 |
696 | N>S | No |
ClinGen gnomAD |
|
|
rs1599190648 CA403390347 RCV000996715 |
697 | M>T | No |
ClinGen ClinVar Ensembl dbSNP |
|
|
CA9088665 rs780410239 |
697 | M>V | No |
ClinGen ExAC gnomAD |
|
|
CA9088663 rs746226898 |
698 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
CA9088664 rs758884682 |
698 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9088662 rs779300501 |
700 | V>A | No |
ClinGen ExAC gnomAD |
|
|
CA403390326 rs1313275839 |
701 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA9088661 rs756996547 |
701 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs367985360 CA304441882 |
702 | F>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA403390316 rs1289381171 |
703 | D>N | No |
ClinGen TOPMed gnomAD |
|
|
CA403390308 rs1353864041 |
704 | V>I | No |
ClinGen gnomAD |
|
|
CA9088657 rs200627243 |
705 | H>D | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA304441876 rs200627243 |
705 | H>Y | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs774037219 CA9088654 |
707 | V>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs141817922 CA403390276 |
709 | L>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA304441868 rs113688813 |
709 | L>P | No |
ClinGen Ensembl |
|
|
rs776826199 CA403390267 |
710 | H>Q | No |
ClinGen ExAC gnomAD |
|
|
rs768779185 CA9088650 |
711 | A>S | No |
ClinGen ExAC gnomAD |
|
|
rs768779185 CA304441865 |
711 | A>T | No |
ClinGen ExAC gnomAD |
|
|
CA9088647 rs772490991 COSM996244 |
713 | A>T | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
rs746340768 CA9088646 |
714 | I>M | No |
ClinGen ExAC gnomAD |
|
|
CA403390247 rs1238723900 |
714 | I>V | No |
ClinGen gnomAD |
|
|
rs757666325 CA9088644 |
717 | G>R | No |
ClinGen ExAC gnomAD |
|
|
CA403390216 rs1233084701 |
719 | G>S | No |
ClinGen gnomAD |
|
|
rs1432140139 CA403389998 |
725 | A>S | No |
ClinGen TOPMed |
|
|
rs767003023 CA9088639 |
726 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
rs752178810 CA9088640 |
726 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1458654470 COSM363294 CA403389988 |
727 | R>H | lung [Cosmic] | No |
ClinGen cosmic curated gnomAD |
|
CA403389991 rs1599190517 |
727 | R>S | No |
ClinGen Ensembl |
|
| TCGA novel | 728 | C>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA403389975 rs1163697035 |
729 | L>F | No |
ClinGen gnomAD |
|
|
CA403389964 rs36527 |
730 | Y>* | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1415329264 CA403389966 |
730 | Y>C | No |
ClinGen gnomAD |
|
|
CA403389958 rs1485815168 |
731 | A>V | No |
ClinGen gnomAD |
|
|
rs766224831 CA403389956 |
732 | S>C | No |
ClinGen ExAC gnomAD |
|
|
CA9088637 rs766224831 |
732 | S>G | No |
ClinGen ExAC gnomAD |
|
|
CA403389950 rs1211162782 |
733 | V>M | No |
ClinGen gnomAD |
|
|
CA403389935 rs1211372039 |
735 | T>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1276432368 CA403389913 |
737 | Q>R | No |
ClinGen gnomAD |
|
|
CA403389887 rs1293501345 |
739 | R>C | No |
ClinGen gnomAD |
|
|
rs1214108157 CA403389881 |
739 | R>H | No |
ClinGen gnomAD |
|
|
CA403389890 rs1293501345 |
739 | R>S | No |
ClinGen gnomAD |
|
|
CA403389875 rs1375708932 |
740 | L>F | No |
ClinGen gnomAD |
|
|
rs760914805 CA9088633 |
741 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA403389820 rs1437215137 |
744 | I>V | No |
ClinGen gnomAD |
|
|
CA403389762 rs1351308207 |
748 | E>* | No |
ClinGen gnomAD |
|
|
CA304441838 rs1024307622 |
749 | I>M | No |
ClinGen TOPMed gnomAD |
|
|
CA403389736 rs1167668007 |
750 | Q>* | No |
ClinGen gnomAD |
|
|
CA403389734 rs1315125570 |
750 | Q>R | No |
ClinGen gnomAD |
|
|
CA403389652 rs1468041127 |
751 | C>S | No |
ClinGen gnomAD |
|
|
rs770310895 CA304441778 |
752 | P>S | No |
ClinGen gnomAD |
|
|
CA403389548 rs1177559635 |
759 | I>V | No |
ClinGen TOPMed |
|
|
CA403389530 rs1333450278 |
760 | Y>C | No |
ClinGen Ensembl |
|
| TCGA novel | 761 | G>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA9088587 rs776792190 |
762 | V>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs776792190 CA403389504 |
762 | V>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9088586 rs768383239 |
766 | K>R | No |
ClinGen ExAC gnomAD |
|
|
rs529147290 CA9088585 |
767 | R>Q | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA403389438 rs1200901988 |
767 | R>W | No |
ClinGen TOPMed gnomAD |
|
|
CA304441770 rs35805642 |
769 | H>Q | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs745877479 CA9088582 |
770 | V>L | No |
ClinGen ExAC gnomAD |
|
|
CA403389399 rs745877479 |
770 | V>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA403389380 rs1568198417 |
771 | F>S | No |
ClinGen Ensembl |
|
|
rs757087170 CA403389341 |
773 | E>D | No |
ClinGen ExAC gnomAD |
|
|
CA403389313 rs1334250993 |
775 | Q>H | No |
ClinGen gnomAD |
|
|
CA403389319 rs1339311455 |
775 | Q>P | No |
ClinGen gnomAD |
|
|
rs777381071 CA9088579 |
777 | A>P | No |
ClinGen ExAC gnomAD |
|
|
rs777381071 CA403389294 |
777 | A>S | No |
ClinGen ExAC gnomAD |
|
|
rs777381071 CA9088578 |
777 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs1320271147 CA403389283 |
778 | G>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA403389277 rs1458060594 |
778 | G>V | No |
ClinGen gnomAD |
|
| TCGA novel | 781 | M>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs758537899 CA9088574 |
781 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9088571 rs762185492 |
787 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
CA9088567 rs775119611 |
791 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
COSM996243 CA9088529 rs767823532 |
798 | A>T | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
rs751164052 CA9088527 |
800 | L>V | No |
ClinGen ExAC gnomAD |
|
|
CA304441452 rs896024149 |
802 | S>A | No |
ClinGen TOPMed |
|
|
rs765967807 CA9088526 |
804 | T>M | No |
ClinGen ExAC |
|
|
CA403388686 rs1200604655 |
813 | V>E | No |
ClinGen TOPMed |
|
|
CA403388659 rs1599189543 |
815 | D>A | No |
ClinGen Ensembl |
|
|
rs1174166884 CA403388627 |
817 | W>* | No |
ClinGen gnomAD |
|
|
CA403388635 rs1599189540 |
817 | W>G | No |
ClinGen Ensembl |
|
|
rs1599189513 CA403388547 |
823 | D>A | No |
ClinGen Ensembl |
|
| TCGA novel | 823 | D>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs748620210 CA9088513 |
825 | F>V | No |
ClinGen ExAC gnomAD |
|
|
rs755281398 CA9088511 |
826 | D>H | No |
ClinGen ExAC gnomAD |
|
|
CA403388510 rs755281398 |
826 | D>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs1173238210 CA403388504 |
826 | D>V | No |
ClinGen TOPMed |
|
|
CA9088510 rs535135154 |
827 | N>D | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1599189486 CA403388491 |
827 | N>S | No |
ClinGen Ensembl |
|
|
rs1599189484 CA403388483 |
828 | S>G | No |
ClinGen Ensembl |
|
|
rs765952566 CA9088509 |
828 | S>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1043172318 CA304441419 |
830 | R>C | No |
ClinGen TOPMed |
|
|
rs758028986 CA9088508 |
830 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs758028986 CA304441415 |
830 | R>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs1599189464 CA403388433 |
832 | S>C | No |
ClinGen Ensembl |
|
|
CA403388427 rs1599189459 |
832 | S>T | No |
ClinGen Ensembl |
|
|
CA9088506 rs764816209 |
836 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs776706788 CA9088504 |
838 | T>N | No |
ClinGen ExAC gnomAD |
|
|
CA403388340 rs1254925364 |
839 | R>C | No |
ClinGen TOPMed |
|
| TCGA novel | 839 | R>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA403388320 rs1180832473 |
841 | R>C | No |
ClinGen gnomAD |
|
|
CA403388316 rs1206643266 |
841 | R>H | No |
ClinGen TOPMed |
|
|
CA9088501 rs775292443 |
846 | E>A | No |
ClinGen ExAC gnomAD |
|
|
CA403388204 rs1269168669 |
848 | I>L | No |
ClinGen gnomAD |
|
| TCGA novel | 848 | I>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1269168669 CA403388206 |
848 | I>V | No |
ClinGen gnomAD |
|
|
rs1210819605 CA403388183 |
849 | P>L | No |
ClinGen gnomAD |
|
|
rs772708961 CA9088500 |
850 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs1229006577 CA403388166 |
851 | L>V | No |
ClinGen gnomAD |
|
|
CA403388138 rs1381476036 |
852 | D>E | No |
ClinGen gnomAD |
|
|
rs757876918 CA304441390 |
853 | N>D | No |
ClinGen Ensembl |
|
|
CA403388075 rs1364104801 |
858 | L>W | No |
ClinGen gnomAD |
No associated diseases with P13639
5 regional properties for P13639
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | Tyrosine-specific protein phosphatases domain | 343 - 390 | IPR000387 |
| domain | Protein-tyrosine phosphatase, catalytic | 319 - 470 | IPR003595 |
| domain | GRAM domain | 29 - 142 | IPR004182 |
| domain | Myotubularin-like, phosphatase domain | 150 - 537 | IPR010569 |
| active_site | Protein-tyrosine phosphatase, active site | 372 - 382 | IPR016130 |
Functions
13 GO annotations of cellular component
| Name | Definition |
|---|---|
| aggresome | An inclusion body formed by dynein-dependent retrograde transport of an aggregated protein on microtubules. |
| cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
| cytosol | The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. |
| extracellular exosome | A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm. |
| extracellular region | The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. |
| ficolin-1-rich granule lumen | Any membrane-enclosed lumen that is part of a ficolin-1-rich granule. |
| membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
| plasma membrane | The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. |
| polysome | A multiribosomal structure representing a linear array of ribosomes held together by messenger RNA. They represent the active complexes in cellular protein synthesis and are able to incorporate amino acids into polypeptides both in vivo and in vitro. |
| ribonucleoprotein complex | A macromolecular complex that contains both RNA and protein molecules. |
| secretory granule lumen | The volume enclosed by the membrane of a secretory granule. |
| synapse | The junction between an axon of one neuron and a dendrite of another neuron, a muscle fiber or a glial cell. As the axon approaches the synapse it enlarges into a specialized structure, the presynaptic terminal bouton, which contains mitochondria and synaptic vesicles. At the tip of the terminal bouton is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic terminal bouton secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane. |
7 GO annotations of molecular function
| Name | Definition |
|---|---|
| cadherin binding | Binding to cadherin, a type I membrane protein involved in cell adhesion. |
| GTP binding | Binding to GTP, guanosine triphosphate. |
| GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + H+ + phosphate. |
| protein kinase binding | Binding to a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate. |
| ribosome binding | Binding to a ribosome. |
| RNA binding | Binding to an RNA molecule or a portion thereof. |
| translation elongation factor activity | Functions in chain elongation during polypeptide synthesis at the ribosome. |
3 GO annotations of biological process
| Name | Definition |
|---|---|
| hematopoietic progenitor cell differentiation | The process in which precursor cell type acquires the specialized features of a hematopoietic progenitor cell, a class of cell types including myeloid progenitor cells and lymphoid progenitor cells. |
| positive regulation of translation | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA. |
| translational elongation | The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. |
3 homologous proteins in AiPD
| 10 | 20 | 30 | 40 | 50 | 60 |
| MVNFTVDQIR | AIMDKKANIR | NMSVIAHVDH | GKSTLTDSLV | CKAGIIASAR | AGETRFTDTR |
| 70 | 80 | 90 | 100 | 110 | 120 |
| KDEQERCITI | KSTAISLFYE | LSENDLNFIK | QSKDGAGFLI | NLIDSPGHVD | FSSEVTAALR |
| 130 | 140 | 150 | 160 | 170 | 180 |
| VTDGALVVVD | CVSGVCVQTE | TVLRQAIAER | IKPVLMMNKM | DRALLELQLE | PEELYQTFQR |
| 190 | 200 | 210 | 220 | 230 | 240 |
| IVENVNVIIS | TYGEGESGPM | GNIMIDPVLG | TVGFGSGLHG | WAFTLKQFAE | MYVAKFAAKG |
| 250 | 260 | 270 | 280 | 290 | 300 |
| EGQLGPAERA | KKVEDMMKKL | WGDRYFDPAN | GKFSKSATSP | EGKKLPRTFC | QLILDPIFKV |
| 310 | 320 | 330 | 340 | 350 | 360 |
| FDAIMNFKKE | ETAKLIEKLD | IKLDSEDKDK | EGKPLLKAVM | RRWLPAGDAL | LQMITIHLPS |
| 370 | 380 | 390 | 400 | 410 | 420 |
| PVTAQKYRCE | LLYEGPPDDE | AAMGIKSCDP | KGPLMMYISK | MVPTSDKGRF | YAFGRVFSGL |
| 430 | 440 | 450 | 460 | 470 | 480 |
| VSTGLKVRIM | GPNYTPGKKE | DLYLKPIQRT | ILMMGRYVEP | IEDVPCGNIV | GLVGVDQFLV |
| 490 | 500 | 510 | 520 | 530 | 540 |
| KTGTITTFEH | AHNMRVMKFS | VSPVVRVAVE | AKNPADLPKL | VEGLKRLAKS | DPMVQCIIEE |
| 550 | 560 | 570 | 580 | 590 | 600 |
| SGEHIIAGAG | ELHLEICLKD | LEEDHACIPI | KKSDPVVSYR | ETVSEESNVL | CLSKSPNKHN |
| 610 | 620 | 630 | 640 | 650 | 660 |
| RLYMKARPFP | DGLAEDIDKG | EVSARQELKQ | RARYLAEKYE | WDVAEARKIW | CFGPDGTGPN |
| 670 | 680 | 690 | 700 | 710 | 720 |
| ILTDITKGVQ | YLNEIKDSVV | AGFQWATKEG | ALCEENMRGV | RFDVHDVTLH | ADAIHRGGGQ |
| 730 | 740 | 750 | 760 | 770 | 780 |
| IIPTARRCLY | ASVLTAQPRL | MEPIYLVEIQ | CPEQVVGGIY | GVLNRKRGHV | FEESQVAGTP |
| 790 | 800 | 810 | 820 | 830 | 840 |
| MFVVKAYLPV | NESFGFTADL | RSNTGGQAFP | QCVFDHWQIL | PGDPFDNSSR | PSQVVAETRK |
| 850 | |||||
| RKGLKEGIPA | LDNFLDKL |