P0CJ48
PR
Gene name |
LHCB1.1 (AB165, CAB2, LHCP-B) |
Protein name |
Chlorophyll a-b binding protein 2, chloroplastic |
Names |
Chlorophyll a-b protein 165, CAB-165, LHCII type I CAB-2 |
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT1G29920 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
3 structures for P0CJ48
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| 4YZH | X-ray | 200 A | B | 36-50 | PDB |
| 8J6Z | EM | 279 A | x/y | 1-267 | PDB |
| AF-P0CJ48-F1 | Predicted | AlphaFoldDB |
10 variants for P0CJ48
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| ENSVATH12325353 | 6 | M>T | No | 1000Genomes | |
| tmp_1_10473195_C_T | 18 | V>M | No | 1000Genomes | |
| tmp_1_10475835_G_C | 20 | L>V | No | 1000Genomes | |
| tmp_1_10473161_C_T | 29 | G>E | No | 1000Genomes | |
| tmp_1_10473132_C_T | 39 | V>I | No | 1000Genomes | |
| ENSVATH01125981 | 125 | K>T | No | 1000Genomes | |
| ENSVATH04669248 | 180 | N>I | No | 1000Genomes | |
|
tmp_1_10475290_C_A tmp_1_10472646_G_A |
201 | L>F | No | 1000Genomes | |
| ENSVATH12324796 | 210 | E>G | No | 1000Genomes | |
| tmp_1_10472488_G_T,A | 253 | N>K | No | 1000Genomes |
No associated diseases with P0CJ48
No regional properties for P0CJ48
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| No domain, repeats, and functional sites for P0CJ48 | |||
7 GO annotations of cellular component
| Name | Definition |
|---|---|
| apoplast | The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. |
| chloroplast thylakoid membrane | The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana. |
| integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
| photosystem I | A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation). |
| photosystem II | A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center. |
| thylakoid | A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. |
3 GO annotations of molecular function
| Name | Definition |
|---|---|
| chlorophyll binding | Binding to a chlorophyll; a compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment. |
| metal ion binding | Binding to a metal ion. |
| mRNA binding | Binding to messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. |
3 GO annotations of biological process
| Name | Definition |
|---|---|
| photosynthesis, light harvesting in photosystem I | After a photon of light is absorbed by one of the many chlorophyll molecules, in one of the light-harvesting complexes of an antenna on photosystem I, some of the absorbed energy is transferred to the pair of chlorophyll molecules in the reaction center. |
| response to fructose | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fructose stimulus. |
| response to light stimulus | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light. |
19 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| P04784 | WHAB1.6 | Chlorophyll a-b binding protein, chloroplastic | Triticum aestivum (Wheat) | PR |
| P08221 | Chlorophyll a-b binding protein of LHCII type I, chloroplastic | Cucumis sativus (Cucumber) | PR | |
| Q00827 | CAB48 | Chlorophyll a-b binding protein 48, chloroplastic | Zea mays (Maize) | PR |
| P12329 | CAB1 | Chlorophyll a-b binding protein 1, chloroplastic | Zea mays (Maize) | PR |
| P27497 | CAB-M9 | Chlorophyll a-b binding protein M9, chloroplastic | Zea mays (Maize) | PR |
| P06671 | Chlorophyll a-b binding protein, chloroplastic | Zea mays (Maize) | PR | |
| Q10HD0 | RCABP89 | Chlorophyll a-b binding protein, chloroplastic | Oryza sativa subsp japonica (Rice) | PR |
| P12330 | CAB1R | Chlorophyll a-b binding protein 1, chloroplastic | Oryza sativa subsp japonica (Rice) | PR |
| P12331 | CAB2R | Chlorophyll a-b binding protein 2, chloroplastic | Oryza sativa subsp japonica (Rice) | PR |
| P09756 | CAB3 | Chlorophyll a-b binding protein 3, chloroplastic | Glycine max (Soybean) (Glycine hispida) | PR |
| P09755 | CAB2 | Chlorophyll a-b binding protein 2, chloroplastic | Glycine max (Soybean) (Glycine hispida) | PR |
| P12471 | Chlorophyll a-b binding protein, chloroplastic | Glycine max (Soybean) (Glycine hispida) | PR | |
| P0CJ48 | LHCB1.1 | Chlorophyll a-b binding protein 2, chloroplastic | Arabidopsis thaliana (Mouse-ear cress) | PR |
| P04778 | LHCB1.3 | Chlorophyll a-b binding protein 1, chloroplastic | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q8VZ87 | LHCB1.2 | Chlorophyll a-b binding protein 3, chloroplastic | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q07473 | LHCB4.1 | Chlorophyll a-b binding protein CP29.1, chloroplastic | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9XF88 | LHCB4.2 | Chlorophyll a-b binding protein CP29.2, chloroplastic | Arabidopsis thaliana (Mouse-ear cress) | PR |
| P07369 | CAB3C | Chlorophyll a-b binding protein 3C, chloroplastic | Solanum lycopersicum (Tomato) (Lycopersicon esculentum) | PR |
| P07370 | CAB1B | Chlorophyll a-b binding protein 1B, chloroplastic | Solanum lycopersicum (Tomato) (Lycopersicon esculentum) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MAASTMALSS | PAFAGKAVNL | SPAASEVLGS | GRVTMRKTVA | KPKGPSGSPW | YGSDRVKYLG |
| 70 | 80 | 90 | 100 | 110 | 120 |
| PFSGESPSYL | TGEFPGDYGW | DTAGLSADPE | TFARNRELEV | IHSRWAMLGA | LGCVFPELLA |
| 130 | 140 | 150 | 160 | 170 | 180 |
| RNGVKFGEAV | WFKAGSQIFS | DGGLDYLGNP | SLVHAQSILA | IWATQVILMG | AVEGYRVAGN |
| 190 | 200 | 210 | 220 | 230 | 240 |
| GPLGEAEDLL | YPGGSFDPLG | LATDPEAFAE | LKVKELKNGR | LAMFSMFGFF | VQAIVTGKGP |
| 250 | 260 | ||||
| IENLADHLAD | PVNNNAWAFA | TNFVPGK |