Q9ZSJ2
Gene name |
RGXT1 |
Protein name |
UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 1 |
Names |
Rhamnogalacturonan xylosyltransferase 1 |
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT4G01770 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q9ZSJ2
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q9ZSJ2-F1 | Predicted | AlphaFoldDB |
47 variants for Q9ZSJ2
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| ENSVATH13875585 | 5 | Q>K | No | 1000Genomes | |
| tmp_4_764585_C_T | 8 | L>F | No | 1000Genomes | |
| tmp_4_764597_A_T | 12 | T>S | No | 1000Genomes | |
| ENSVATH00453022 | 14 | S>F | No | 1000Genomes | |
| tmp_4_764615_A_C | 18 | S>R | No | 1000Genomes | |
| tmp_4_764633_T_C | 24 | S>P | No | 1000Genomes | |
| ENSVATH06417975 | 32 | S>T | No | 1000Genomes | |
| ENSVATH00453024 | 51 | L>M | No | 1000Genomes | |
| tmp_4_764717_C_T | 52 | P>S | No | 1000Genomes | |
| tmp_4_764739_T_C | 59 | F>S | No | 1000Genomes | |
| tmp_4_764759_T_G | 66 | S>A | No | 1000Genomes | |
| ENSVATH00453026 | 71 | P>S | No | 1000Genomes | |
| ENSVATH00453027 | 74 | Q>H | No | 1000Genomes | |
| ENSVATH06417979 | 109 | N>T | No | 1000Genomes | |
| tmp_4_764942_A_T | 127 | I>F | No | 1000Genomes | |
| ENSVATH06417982 | 132 | I>T | No | 1000Genomes | |
| ENSVATH06417981 | 132 | I>V | No | 1000Genomes | |
| tmp_4_764971_A_C | 136 | K>N | No | 1000Genomes | |
| ENSVATH10511226 | 144 | H>R | No | 1000Genomes | |
| ENSVATH02614793 | 154 | S>Y | No | 1000Genomes | |
| tmp_4_765030_C_T | 156 | T>I | No | 1000Genomes | |
| ENSVATH13875589 | 172 | R>T | No | 1000Genomes | |
| ENSVATH06418005 | 187 | M>L | No | 1000Genomes | |
| ENSVATH10511315 | 201 | L>Q | No | 1000Genomes | |
| tmp_4_765945_C_G | 211 | F>L | No | 1000Genomes | |
| ENSVATH00453030 | 214 | D>E | No | 1000Genomes | |
| tmp_4_765957_G_A | 215 | M>I | No | 1000Genomes | |
| ENSVATH00453031 | 216 | P>A | No | 1000Genomes | |
| tmp_4_766047_C_G | 220 | P>A | No | 1000Genomes | |
| ENSVATH10511319 | 229 | H>D | No | 1000Genomes | |
| ENSVATH10511320 | 229 | H>P | No | 1000Genomes | |
| ENSVATH10511321 | 230 | P>L | No | 1000Genomes | |
| tmp_4_766132_C_G | 248 | T>R | No | 1000Genomes | |
| tmp_4_766185_G_C | 266 | A>P | No | 1000Genomes | |
| tmp_4_766194_G_A | 269 | E>K | No | 1000Genomes | |
| tmp_4_766204_G_A | 272 | R>H | No | 1000Genomes | |
| ENSVATH06418016 | 312 | E>K | No | 1000Genomes | |
| tmp_4_766448_C_T | 313 | A>V | No | 1000Genomes | |
| ENSVATH02614814 | 316 | Q>K | No | 1000Genomes | |
| ENSVATH06418017 | 316 | Q>L | No | 1000Genomes | |
| tmp_4_766477_G_C | 323 | V>L | No | 1000Genomes | |
| ENSVATH10511343 | 338 | K>R | No | 1000Genomes | |
| ENSVATH06418019 | 339 | R>L | No | 1000Genomes | |
| tmp_4_766541_G_A | 344 | G>D | No | 1000Genomes | |
| ENSVATH00453034 | 352 | A>T | No | 1000Genomes | |
| tmp_4_766582_G_A | 358 | G>R | No | 1000Genomes | |
| ENSVATH00453037 | 361 | E>G | No | 1000Genomes |
No associated diseases with Q9ZSJ2
1 regional properties for Q9ZSJ2
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | Nucleotide-diphospho-sugar transferase | 120 - 340 | IPR005069 |
3 GO annotations of cellular component
| Name | Definition |
|---|---|
| Golgi apparatus | A membrane-bound cytoplasmic organelle of the endomembrane system that further processes the core oligosaccharides (e.g. N-glycans) added to proteins in the endoplasmic reticulum and packages them into membrane-bound vesicles. The Golgi apparatus operates at the intersection of the secretory, lysosomal, and endocytic pathways. |
| Golgi membrane | The lipid bilayer surrounding any of the compartments of the Golgi apparatus. |
| integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
2 GO annotations of molecular function
| Name | Definition |
|---|---|
| glycosyltransferase activity | Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). |
| UDP-xylosyltransferase activity | Catalysis of the transfer of a xylosyl group from UDP-xylose to an acceptor molecule. |
1 GO annotations of biological process
| Name | Definition |
|---|---|
| rhamnogalacturonan II biosynthetic process | The chemical reactions and pathways resulting in the formation of rhamnogalacturonan II, a low molecular mass (5 - 10KDa) pectic polysaccharide, conserved in the primary walls of dicotyledenous and monocotyledenous plants and gymnosperms. |
1 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q9M146 | MGP4 | UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MEQKQHILKQ | STFSSSPSSY | SSISDRPISL | LSRNGLLLLL | LALVLLLGVL | LPWPGSPLFL |
| 70 | 80 | 90 | 100 | 110 | 120 |
| FPNRLSSSLS | PSPQSKWRDY | TLAQAARFVA | KNGTVIVCAV | SSPFLPFLNN | WLISVSRQKH |
| 130 | 140 | 150 | 160 | 170 | 180 |
| QDKVLVIAED | YITLYKVNEK | WPGHAVLIPP | ALDSKTAFSF | GSQGFFNFTA | RRPQHLLQIL |
| 190 | 200 | 210 | 220 | 230 | 240 |
| ELGYNVMYND | VDMVWLQDPF | LYLEGSHDAY | FTDDMPQIKP | LNHSHDLPHP | DRNGETYICS |
| 250 | 260 | 270 | 280 | 290 | 300 |
| CMIYLRPTNG | AKLLMKKWSE | ELQSQAWSES | IRFKANDQPA | FNLALNKTAH | QVDLYLLSQV |
| 310 | 320 | 330 | 340 | 350 | 360 |
| AFPTGGLYFK | NEAWVQETKG | KHVIVHNNYI | IGYDRKMKRF | QDYGLWLVDD | HALESPLGKL |
| E |