Q9UBV7
Gene name |
B4GALT7 (XGALT1, UNQ748/PRO1478) |
Protein name |
Beta-1,4-galactosyltransferase 7 |
Names |
Beta-1,4-GalTase 7, Beta4Gal-T7, b4Gal-T7, Proteoglycan UDP-galactose:beta-xylose beta1,4-galactosyltransferase I, UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 7, UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 7, UDP-galactose:beta-xylose beta-1,4-galactosyltransferase, XGPT, XGalT-1, Xylosylprotein 4-beta-galactosyltransferase, Xylosylprotein beta-1,4-galactosyltransferase |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:11285 |
EC number |
2.4.1.133: Hexosyltransferases |
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
3 structures for Q9UBV7
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| 4IRP | X-ray | 210 A | A/B | 81-327 | PDB |
| 4IRQ | X-ray | 230 A | A/B/C/D | 81-327 | PDB |
| AF-Q9UBV7-F1 | Predicted | AlphaFoldDB |
390 variants for Q9UBV7
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
rs200503833 RCV002278270 RCV000344285 RCV002470837 RCV000725058 CA3586344 |
13 | W>* | Ehlers-Danlos syndrome Ehlers-Danlos syndrome, spondylodysplastic type, 1 Ehlers-Danlos syndrome progeroid type [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
rs375845310 RCV000210975 CA3586383 |
41 | L>P | Ehlers-Danlos syndrome progeroid type [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
CA3586399 RCV000709857 RCV002534483 rs373059256 |
62 | R>K | Ehlers-Danlos syndrome progeroid type Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
rs780427259 RCV001866487 |
75 | C>* | Ehlers-Danlos syndrome progeroid type [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV002518544 RCV000239551 RCV001092138 rs879255634 RCV003147431 |
93 | H>missing | Ehlers-Danlos syndrome, spondylodysplastic type, 1 Ehlers-Danlos syndrome progeroid type Inborn genetic diseases [ClinVar] | Yes |
ClinVar dbSNP |
|
CA3586433 COSM1186914 rs370658610 RCV001306856 |
93 | H>R | lung Ehlers-Danlos syndrome progeroid type [Cosmic, ClinVar] | Yes |
ClinGen cosmic curated ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
RCV000709856 COSM3697166 rs142476892 CA3586432 RCV000416090 RCV002278651 |
93 | H>Y | Ehlers-Danlos syndrome large_intestine Ehlers-Danlos syndrome progeroid type [ClinVar, Cosmic] | Yes |
ClinGen cosmic curated ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs926913315 CA132892199 RCV001766763 RCV000845083 |
95 | L>V | Ehlers-Danlos syndrome progeroid type [ClinVar] | Yes |
ClinGen ClinVar dbSNP gnomAD |
|
RCV000521427 CA3586439 rs771088509 RCV001857982 |
101 | F>S | Ehlers-Danlos syndrome progeroid type [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
RCV001053837 CA3586454 RCV001538738 rs568792091 |
125 | R>Q | Variant assessed as Somatic; 0.0 impact. Ehlers-Danlos syndrome progeroid type [NCI-TCGA, ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC NCI-TCGA dbSNP gnomAD |
|
RCV002462129 CA362374384 rs1370937766 RCV001856177 RCV000779598 |
133 | Q>R | Ehlers-Danlos syndrome progeroid type [ClinVar] | Yes |
ClinGen ClinVar dbSNP gnomAD |
|
RCV003137853 CA3586497 rs187063864 RCV000414159 RCV000239499 |
141 | R>W | Ehlers-Danlos syndrome, spondylodysplastic type, 1 Ehlers-Danlos syndrome progeroid type [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
rs137913131 RCV000523049 RCV001853668 CA3586529 |
185 | V>M | Ehlers-Danlos syndrome progeroid type [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
RCV000005963 VAR_010293 rs121917817 CA117646 |
186 | A>D | Ehlers-Danlos syndrome progeroid type EDSSPD1 [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt ExAC dbSNP gnomAD |
|
rs149484064 RCV001853700 RCV000520600 CA3586533 |
188 | P>R | Ehlers-Danlos syndrome progeroid type [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
RCV001564485 CA3586539 rs200732558 RCV000902743 |
197 | K>E | Ehlers-Danlos syndrome progeroid type [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
CA132894876 RCV002554843 rs935389752 RCV001092139 |
201 | G>S | Ehlers-Danlos syndrome progeroid type [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
|
VAR_010294 RCV000005964 rs121917818 CA117647 |
206 | L>P | Ehlers-Danlos syndrome progeroid type EDSSPD1 [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl dbSNP |
|
CA3586614 RCV001551344 rs753594601 RCV000239469 |
214 | C>Y | Ehlers-Danlos syndrome progeroid type [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
RCV001323453 rs199905021 RCV002290689 CA3586617 |
220 | R>C | Ehlers-Danlos syndrome progeroid type [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
CA362376391 RCV000801019 rs1468472910 |
221 | F>S | Ehlers-Danlos syndrome progeroid type [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
|
CA3586625 RCV001585869 rs201489289 RCV000925138 |
226 | R>C | Ehlers-Danlos syndrome progeroid type [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
RCV001564115 rs147617631 CA3586636 RCV000981636 |
233 | R>W | Ehlers-Danlos syndrome progeroid type [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
CA362376793 RCV001325133 rs1435784513 |
254 | T>I | Variant assessed as Somatic; impact. Ehlers-Danlos syndrome progeroid type [NCI-TCGA, ClinVar] | Yes |
ClinGen ClinVar NCI-TCGA dbSNP gnomAD |
|
rs375644526 CA3586687 RCV001855134 RCV003144194 RCV000331849 |
264 | R>Q | Ehlers-Danlos syndrome, spondylodysplastic type, 1 Ehlers-Danlos syndrome progeroid type [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
RCV000005965 RCV000779599 CA117648 RCV000258718 rs28937869 RCV000413846 RCV002482832 |
270 | R>C | Ehlers-Danlos syndrome, spondylodysplastic type, 1 Ehlers-Danlos syndrome progeroid type Larsen-like syndrome, B3GAT3 type [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
RCV000429366 CA3586692 RCV001066223 RCV002522511 rs146632722 |
272 | A>T | Ehlers-Danlos syndrome progeroid type Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
rs1481659687 CA362377197 RCV001257134 |
277 | E>* | Ehlers-Danlos syndrome progeroid type [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
|
rs780922438 RCV002521622 RCV000427309 CA3586726 |
292 | Y>C | Ehlers-Danlos syndrome progeroid type [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
CA3586740 RCV001865481 RCV002279248 CA3586739 RCV000479006 rs145082497 |
304 | G>R | Ehlers-Danlos syndrome Ehlers-Danlos syndrome progeroid type [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
CA362377755 RCV001335541 rs770222232 |
320 | A>D | Ehlers-Danlos syndrome progeroid type [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
CA362371523 rs1160171646 |
2 | F>I | No |
ClinGen gnomAD |
|
|
CA362371532 rs749515076 |
3 | P>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1418978445 CA362371535 |
3 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
CA3586341 rs749515076 |
3 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs757046426 CA3586342 |
4 | S>* | No |
ClinGen ExAC gnomAD |
|
|
rs1392230207 CA362371545 |
5 | R>L | No |
ClinGen TOPMed gnomAD |
|
|
rs1392230207 CA362371543 |
5 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs1485732305 CA362371548 |
6 | R>K | No |
ClinGen TOPMed gnomAD |
|
|
rs886748984 CA132886035 |
6 | R>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1370799068 CA362371556 |
7 | K>R | No |
ClinGen TOPMed gnomAD |
|
|
rs1311839195 CA362371577 |
10 | Q>L | No |
ClinGen gnomAD |
|
|
rs1311839195 CA362371576 |
10 | Q>R | No |
ClinGen gnomAD |
|
|
CA362371582 rs1375372500 |
11 | L>Q | No |
ClinGen gnomAD |
|
|
rs794726935 CA238875 RCV000173418 |
12 | P>L | No |
ClinGen ClinVar TOPMed dbSNP |
|
|
rs200503833 CA362371593 |
13 | W>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1266147880 CA362371591 |
13 | W>R | No |
ClinGen gnomAD |
|
|
rs772001148 CA3586346 |
16 | G>D | No |
ClinGen ExAC |
|
|
CA362371614 rs1391741493 |
16 | G>S | No |
ClinGen TOPMed |
|
|
rs774824237 CA3586347 |
17 | R>G | No |
ClinGen ExAC gnomAD |
|
|
rs1165029746 CA362371620 |
17 | R>K | No |
ClinGen TOPMed |
|
|
CA362372345 rs1233711967 |
19 | G>E | No |
ClinGen gnomAD |
|
|
rs201186641 CA132891745 |
19 | G>R | No |
ClinGen 1000Genomes TOPMed gnomAD |
|
|
CA362372350 rs1233711967 |
19 | G>V | No |
ClinGen gnomAD |
|
|
CA362372395 rs1257503347 |
22 | S>C | No |
ClinGen TOPMed gnomAD |
|
|
rs905273502 CA132891776 |
23 | G>S | No |
ClinGen TOPMed gnomAD |
|
|
CA3586373 rs565183548 |
24 | G>D | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA132891781 rs769035149 |
24 | G>S | No |
ClinGen Ensembl |
|
|
rs565183548 CA362372431 |
24 | G>V | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs776062892 CA3586374 |
25 | L>F | No |
ClinGen ExAC gnomAD |
|
|
CA362372466 rs1581992259 |
26 | P>L | No |
ClinGen Ensembl |
|
|
rs1433365660 CA362372477 |
27 | R>P | No |
ClinGen TOPMed gnomAD |
|
|
CA362372475 rs1433365660 |
27 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA132891807 rs947051343 |
27 | R>W | No |
ClinGen TOPMed gnomAD |
|
|
rs761147452 CA3586375 |
29 | C>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA362372521 rs1433445414 |
30 | S>C | No |
ClinGen gnomAD |
|
|
CA362372522 rs1433445414 |
30 | S>F | No |
ClinGen gnomAD |
|
|
rs529356820 CA132891828 |
31 | V>F | No |
ClinGen TOPMed gnomAD |
|
|
rs529356820 CA362372523 |
31 | V>I | No |
ClinGen TOPMed gnomAD |
|
|
CA362372526 rs529356820 |
31 | V>L | No |
ClinGen TOPMed gnomAD |
|
|
rs1043221348 CA132891835 |
32 | F>I | No |
ClinGen TOPMed |
|
|
rs905599026 CA132891840 |
33 | H>P | No |
ClinGen Ensembl |
|
|
CA362372563 rs1581992316 |
33 | H>Y | No |
ClinGen Ensembl |
|
|
rs1296346393 CA362372604 |
35 | F>Y | No |
ClinGen gnomAD |
|
|
CA3586380 rs765468044 |
36 | V>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA362372638 rs1382067342 |
37 | A>T | No |
ClinGen TOPMed |
|
|
rs1303207740 CA362372680 |
39 | L>H | No |
ClinGen gnomAD |
|
|
rs750694395 CA3586381 |
40 | S>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3586385 rs370483831 |
43 | F>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs754884091 CA3586386 |
44 | F>L | No |
ClinGen ExAC gnomAD |
|
|
rs747688432 CA362372782 |
45 | S>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs747688432 CA3586389 |
45 | S>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs780778092 CA3586387 |
45 | S>P | No |
ClinGen ExAC gnomAD |
|
|
CA3586388 rs747688432 |
45 | S>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA132891920 rs896408238 |
47 | L>F | No |
ClinGen TOPMed gnomAD |
|
|
CA132891931 rs895605058 |
47 | L>R | No |
ClinGen Ensembl |
|
|
CA362372839 rs1157044694 |
48 | W>* | No |
ClinGen gnomAD |
|
|
CA362372823 rs1347902871 |
48 | W>R | No |
ClinGen TOPMed gnomAD |
|
|
rs1467328242 CA362372850 |
49 | L>P | No |
ClinGen TOPMed |
|
|
CA362372913 rs1214450480 |
52 | S>R | No |
ClinGen gnomAD |
|
|
rs772473695 CA3586393 |
54 | S>A | No |
ClinGen ExAC gnomAD |
|
|
CA132891947 rs1025566307 |
54 | S>C | No |
ClinGen TOPMed gnomAD |
|
|
rs1309659292 CA362372989 |
56 | D>E | No |
ClinGen TOPMed gnomAD |
|
|
CA362372981 rs761181492 |
56 | D>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3586394 rs775736128 |
56 | D>N | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 56 | D>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs761181492 CA3586395 |
56 | D>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1268996736 CA362372994 |
57 | V>M | No |
ClinGen TOPMed |
|
| TCGA novel | 58 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
COSM1066430 CA362373032 rs1306108840 |
59 | R>Q | Variant assessed as Somatic; impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed |
|
rs1331979413 CA362373029 |
59 | R>W | No |
ClinGen TOPMed |
|
|
rs776644528 CA3586397 |
60 | A>S | No |
ClinGen ExAC gnomAD |
|
|
rs761859872 CA3586398 |
61 | V>G | No |
ClinGen ExAC gnomAD |
|
|
CA3586401 rs773416080 |
63 | G>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs773416080 CA3586400 |
63 | G>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs766139567 CA3586402 |
65 | G>E | No |
ClinGen ExAC gnomAD |
|
|
CA3586403 rs751313034 |
67 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA362373148 rs1213495069 |
68 | T>I | No |
ClinGen gnomAD |
|
|
CA362373157 rs1239119479 |
69 | S>A | No |
ClinGen gnomAD |
|
|
CA3586404 rs754899566 |
69 | S>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1581992501 CA362373178 |
70 | G>V | No |
ClinGen Ensembl |
|
|
rs767582708 CA3586405 |
71 | P>H | No |
ClinGen ExAC |
|
|
rs752728024 CA362373197 |
72 | P>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs145261025 CA3586407 |
72 | P>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs752728024 CA3586406 |
72 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1166915437 CA362373212 |
73 | R>C | No |
ClinGen gnomAD |
|
|
CA3586408 rs777486041 |
73 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1195302755 CA362373226 |
74 | A>T | No |
ClinGen TOPMed |
|
|
CA132892026 rs563580440 |
76 | P>S | No |
ClinGen 1000Genomes gnomAD |
|
|
CA132892037 rs201859856 |
77 | P>L | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs201859856 CA3586413 |
77 | P>Q | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1229541593 CA362373295 |
77 | P>S | No |
ClinGen gnomAD |
|
|
rs1199340266 CA362373340 |
79 | P>Q | No |
ClinGen TOPMed |
|
|
rs777092684 CA3586415 |
80 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA362373356 rs1270985250 |
80 | P>T | No |
ClinGen TOPMed |
|
|
CA3586417 rs549224727 |
81 | P>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1483839796 CA362373399 |
82 | E>G | No |
ClinGen gnomAD |
|
|
CA362373389 rs1232810965 |
82 | E>K | No |
ClinGen gnomAD |
|
|
rs964420687 CA132892094 |
83 | H>D | No |
ClinGen TOPMed |
|
|
rs763167963 CA362373428 |
84 | W>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs763167963 CA3586420 |
84 | W>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs975191694 CA132892099 |
85 | E>G | No |
ClinGen TOPMed gnomAD |
|
|
CA3586423 rs759226446 |
86 | E>D | No |
ClinGen ExAC gnomAD |
|
|
CA3586422 rs766536438 |
86 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs766536438 CA3586421 |
86 | E>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3586424 rs767458092 |
87 | D>N | No |
ClinGen ExAC gnomAD |
|
|
rs752670843 CA3586425 |
89 | S>F | No |
ClinGen ExAC gnomAD |
|
|
RCV000485451 rs1064796683 |
90 | W>missing | No |
ClinVar dbSNP |
|
|
CA362373552 rs1347089087 |
90 | W>L | No |
ClinGen gnomAD |
|
|
rs371055397 CA132892118 |
91 | G>D | No |
ClinGen ESP ExAC TOPMed |
|
|
CA362373565 rs1310598945 |
91 | G>R | No |
ClinGen gnomAD |
|
|
rs371055397 CA3586427 |
91 | G>V | No |
ClinGen ESP ExAC TOPMed |
|
|
rs756885469 CA3586430 |
92 | P>A | No |
ClinGen ExAC gnomAD |
|
|
CA362373594 rs778409854 |
92 | P>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA362373597 rs778409854 |
92 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs778409854 CA3586431 |
92 | P>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs756885469 CA362373590 |
92 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs142476892 CA132892136 |
93 | H>D | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA132892145 rs781594235 |
93 | H>Q | No |
ClinGen ExAC gnomAD |
|
| rs879255634 | 93 | H>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
COSM1436366 rs926736424 CA362373629 |
94 | R>C | large_intestine Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA TOPMed |
|
rs926736424 CA132892147 |
94 | R>G | No |
ClinGen TOPMed |
|
|
rs369809779 CA132892157 |
94 | R>H | No |
ClinGen ESP gnomAD |
|
|
CA132892167 rs369809779 |
94 | R>L | No |
ClinGen ESP gnomAD |
|
|
rs1212818388 CA362373643 |
95 | L>Q | No |
ClinGen gnomAD |
|
|
rs770290127 CA3586436 |
97 | V>G | No |
ClinGen ExAC |
|
|
CA362373686 rs1158245018 |
100 | P>S | No |
ClinGen Ensembl |
|
|
CA362373709 rs1356022263 |
101 | F>L | No |
ClinGen TOPMed |
|
|
CA362373693 rs1581992715 |
101 | F>L | No |
ClinGen Ensembl |
|
|
rs201504625 CA3586440 |
102 | R>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA3586441 rs759898367 |
102 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA362373737 rs1416146236 COSM3697167 |
103 | E>K | Variant assessed as Somatic; 0.0 impact. large_intestine breast [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
COSM84949 CA3586442 rs771938935 |
104 | R>C | pancreas [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
rs140590638 CA132892216 |
104 | R>H | No |
ClinGen ESP TOPMed gnomAD |
|
|
rs140590638 CA132892217 |
104 | R>L | No |
ClinGen ESP TOPMed gnomAD |
|
|
CA362373827 RCV000493088 rs1131691521 |
105 | F>V | No |
ClinGen ClinVar Ensembl dbSNP |
|
| TCGA novel | 106 | E>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1324340345 CA362373890 |
107 | E>G | No |
ClinGen gnomAD |
|
|
RCV000276634 CA3586444 rs760654517 |
110 | V>I | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
rs1237217428 CA362373988 |
112 | V>L | No |
ClinGen TOPMed gnomAD |
|
|
rs1237217428 CA362373983 |
112 | V>M | No |
ClinGen TOPMed gnomAD |
|
|
rs138496419 CA3586445 |
113 | P>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA3586447 rs753864389 |
114 | H>D | No |
ClinGen ExAC gnomAD |
|
|
CA3586446 rs753864389 |
114 | H>N | No |
ClinGen ExAC gnomAD |
|
|
CA132892278 rs201730170 |
114 | H>R | No |
ClinGen TOPMed gnomAD |
|
|
rs753864389 CA362374026 |
114 | H>Y | No |
ClinGen ExAC gnomAD |
|
|
CA132892284 rs538990996 |
115 | M>I | No |
ClinGen 1000Genomes TOPMed gnomAD |
|
|
CA362374050 rs1186498021 |
115 | M>T | No |
ClinGen TOPMed |
|
|
CA3586448 rs571496197 |
115 | M>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs750028904 CA3586449 |
116 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA362374064 rs750028904 |
116 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 116 | R>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA362374090 rs1247138814 |
117 | R>H | No |
ClinGen gnomAD |
|
|
rs1191457286 CA362374101 |
118 | F>L | No |
ClinGen gnomAD |
|
|
CA362374102 rs1218335048 |
119 | L>M | No |
ClinGen TOPMed |
|
|
rs1272484534 CA362374106 |
119 | L>R | No |
ClinGen gnomAD |
|
|
CA3586451 rs781467817 |
121 | R>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs201281389 CA362374131 |
122 | K>* | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs201281389 CA362374128 |
122 | K>E | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs201281389 CA3586452 |
122 | K>Q | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs756560466 CA362374197 |
125 | R>G | No |
ClinGen ExAC gnomAD |
|
|
CA3586455 rs568792091 |
125 | R>P | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs756560466 CA3586453 |
125 | R>W | No |
ClinGen ExAC gnomAD |
|
|
CA3586456 rs770908135 |
127 | H>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA362374267 rs1332406943 |
128 | I>S | No |
ClinGen gnomAD |
|
|
rs1332406943 CA362374270 |
128 | I>T | No |
ClinGen gnomAD |
|
|
CA3586457 rs779066399 |
129 | Y>S | No |
ClinGen ExAC gnomAD |
|
|
rs997197290 CA132892324 |
130 | V>A | No |
ClinGen TOPMed |
|
|
CA362374345 rs1231424511 |
131 | L>R | No |
ClinGen TOPMed |
|
|
CA132892359 rs1030828763 |
135 | D>E | No |
ClinGen gnomAD |
|
| TCGA novel | 135 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs768536523 CA3586463 |
136 | H>L | No |
ClinGen ExAC gnomAD |
|
|
rs760524061 CA3586462 |
136 | H>Y | No |
ClinGen ExAC gnomAD |
|
|
rs1049518256 CA132894578 |
141 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA362374846 rs1433359702 |
142 | A>V | No |
ClinGen gnomAD |
|
|
rs1173138636 CA362374851 |
143 | A>T | No |
ClinGen gnomAD |
|
|
rs1345839076 CA362374865 |
143 | A>V | No |
ClinGen gnomAD |
|
|
CA3586499 rs747996469 |
144 | L>F | No |
ClinGen ExAC gnomAD |
|
|
CA132894613 rs866139966 |
144 | L>P | No |
ClinGen Ensembl |
|
|
CA362374902 rs1561815397 |
145 | I>M | No |
ClinGen Ensembl |
|
|
rs749287395 CA3586502 |
147 | V>M | No |
ClinGen ExAC gnomAD |
|
|
rs1411210031 CA362374977 |
149 | F>L | No |
ClinGen TOPMed |
|
|
CA362375008 rs1305292304 |
151 | E>D | No |
ClinGen gnomAD |
|
|
rs373861088 CA3586503 |
152 | S>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA362375020 rs773857616 |
152 | S>N | No |
ClinGen ExAC gnomAD |
|
|
rs773857616 CA3586504 |
152 | S>T | No |
ClinGen ExAC gnomAD |
|
|
CA3586505 rs759074485 |
155 | S>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3586506 COSM1436368 rs145129446 |
156 | T>M | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs145129446 CA362375096 |
156 | T>R | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA362375138 rs1259800618 |
158 | Y>C | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 159 | I>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs750954761 CA3586510 |
161 | M>I | No |
ClinGen ExAC gnomAD |
|
|
CA3586509 rs762207140 |
161 | M>L | No |
ClinGen ExAC gnomAD |
|
|
CA3586508 rs762207140 |
161 | M>V | No |
ClinGen ExAC gnomAD |
|
|
rs370142626 CA362375222 |
162 | H>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1338444955 CA362375217 |
162 | H>R | No |
ClinGen gnomAD |
|
|
rs375801425 CA132894688 |
162 | H>Y | No |
ClinGen ESP TOPMed |
|
|
rs542850594 CA3586512 |
163 | D>N | No |
ClinGen ExAC gnomAD |
|
|
rs1281774679 CA362375265 |
164 | V>A | No |
ClinGen TOPMed |
|
|
CA3586514 rs755103584 |
164 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs755931741 CA3586517 |
167 | L>F | No |
ClinGen ExAC gnomAD |
|
|
CA3586518 rs201868342 |
171 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs201868342 CA132894748 |
171 | E>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3586519 rs749164672 |
172 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs775207945 CA362375451 |
174 | D>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs532945440 CA3586523 |
174 | D>H | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs532945440 CA3586522 |
174 | D>Y | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA3586525 rs760305901 |
175 | Y>C | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 179 | E>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA3586526 rs201942042 |
180 | A>T | No |
ClinGen 1000Genomes ExAC |
|
|
CA362375544 rs1242031806 |
180 | A>V | No |
ClinGen gnomAD |
|
|
rs371253299 CA362375610 CA3586528 |
184 | H>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs137913131 CA3586530 |
185 | V>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA3586532 rs752949794 |
188 | P>A | No |
ClinGen ExAC gnomAD |
|
|
rs149484064 RCV000439328 CA3586534 |
188 | P>L | No |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA3586537 rs757093697 |
195 | H>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA362375821 rs1436059549 |
196 | Y>* | No |
ClinGen TOPMed gnomAD |
|
|
rs778791647 CA3586538 |
196 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
rs972752597 CA132894849 |
196 | Y>N | No |
ClinGen TOPMed |
|
|
CA3586541 rs560198890 |
199 | Y>* | No |
ClinGen ExAC gnomAD |
|
|
CA132894864 rs764627401 |
199 | Y>C | No |
ClinGen gnomAD |
|
| TCGA novel | 199 | Y>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1460743738 CA362375895 |
200 | V>A | No |
ClinGen gnomAD |
|
|
rs1460743738 CA362375893 |
200 | V>D | No |
ClinGen gnomAD |
|
|
rs1460743738 CA362375897 |
200 | V>G | No |
ClinGen gnomAD |
|
|
CA3586544 rs773659654 |
202 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1448197445 CA362375915 |
203 | I>L | No |
ClinGen TOPMed |
|
|
CA362375918 rs1355526835 |
203 | I>T | No |
ClinGen gnomAD |
|
|
rs771458628 CA3586546 |
205 | L>P | No |
ClinGen ExAC gnomAD |
|
|
CA3586545 rs763383177 |
205 | L>V | No |
ClinGen ExAC |
|
|
rs774917613 CA3586547 |
207 | S>F | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 208 | K>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA3586548 rs141168189 |
208 | K>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA362375978 rs1362433836 |
209 | Q>R | No |
ClinGen gnomAD |
|
|
CA3586550 rs752722346 |
210 | H>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs760839750 CA3586551 |
210 | H>Q | No |
ClinGen ExAC |
|
|
CA362376002 rs752722346 |
210 | H>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA132894938 rs1041232589 |
210 | H>Y | No |
ClinGen TOPMed |
|
|
rs1203004554 CA362376012 |
211 | Y>H | No |
ClinGen gnomAD |
|
|
CA3586553 rs754100174 |
212 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs41284943 CA3586552 |
212 | R>W | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1205721014 CA362376367 |
217 | M>I | No |
ClinGen gnomAD |
|
|
CA3586619 rs781202877 |
220 | R>H | No |
ClinGen ExAC gnomAD |
|
|
rs199905021 CA3586618 |
220 | R>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1191651385 CA362376402 |
222 | W>C | No |
ClinGen gnomAD |
|
|
rs1469803794 CA362376396 |
222 | W>R | No |
ClinGen gnomAD |
|
|
CA362376404 rs1401907822 |
223 | G>S | No |
ClinGen TOPMed |
|
|
CA362376417 rs1394017597 |
224 | W>C | No |
ClinGen gnomAD |
|
|
rs773298306 CA3586624 |
225 | G>D | No |
ClinGen ExAC gnomAD |
|
|
rs769954044 CA3586622 |
225 | G>S | No |
ClinGen ExAC gnomAD |
|
|
rs773298306 CA3586623 |
225 | G>V | No |
ClinGen ExAC gnomAD |
|
|
CA3586626 rs774293088 |
226 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs774293088 CA362376424 |
226 | R>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3586630 rs145226749 |
227 | E>K | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA362376426 rs145226749 |
227 | E>Q | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA3586634 rs756942664 |
229 | D>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs753374573 CA3586633 |
229 | D>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA362376442 rs753374573 |
229 | D>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA362376448 rs751946151 |
230 | E>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1026522102 CA132896335 |
230 | E>D | No |
ClinGen Ensembl |
|
|
rs751946151 CA3586635 |
230 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA362376455 rs1348858046 |
231 | F>L | No |
ClinGen TOPMed gnomAD |
|
|
rs1348858046 CA362376454 |
231 | F>V | No |
ClinGen TOPMed gnomAD |
|
|
CA3586638 rs780268052 |
233 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs780268052 CA3586637 |
233 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3586639 rs139730903 |
234 | R>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs777921880 CA3586640 |
234 | R>H | No |
ClinGen ExAC gnomAD |
|
|
rs1460892986 CA362376489 |
235 | I>M | No |
ClinGen gnomAD |
|
|
CA3586641 rs749404371 |
235 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA362376522 rs1438286552 |
238 | A>S | No |
ClinGen gnomAD |
|
|
rs1183410452 CA362376533 |
239 | G>R | No |
ClinGen gnomAD |
|
|
rs1561816183 CA362376571 |
241 | Q>R | No |
ClinGen Ensembl |
|
|
rs1201083642 CA362376628 |
242 | L>H | No |
ClinGen TOPMed |
|
|
rs1484513314 CA362376635 |
243 | F>S | No |
ClinGen gnomAD |
|
|
CA362376646 rs1199510691 |
244 | R>C | No |
ClinGen TOPMed gnomAD |
|
|
CA3586671 rs567512466 |
244 | R>H | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs964225881 CA132896663 |
245 | P>L | No |
ClinGen TOPMed |
|
|
rs1429482924 CA362376655 |
245 | P>S | No |
ClinGen TOPMed gnomAD |
|
|
CA3586672 rs145692398 |
246 | S>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1366319631 CA362376690 |
248 | I>V | No |
ClinGen TOPMed |
|
|
CA362376741 rs1433166971 |
251 | G>A | No |
ClinGen gnomAD |
|
|
rs1377342756 CA362376733 |
251 | G>R | No |
ClinGen TOPMed gnomAD |
|
|
CA362376742 rs1433166971 |
251 | G>V | No |
ClinGen gnomAD |
|
|
CA362376759 rs1178512025 |
252 | Y>* | No |
ClinGen Ensembl |
|
|
CA3586676 rs762603211 |
252 | Y>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs762603211 CA362376753 |
252 | Y>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3586677 rs767799114 |
253 | K>E | No |
ClinGen ExAC gnomAD |
|
|
rs756527433 CA3586679 |
256 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3586680 rs764639019 |
256 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs729459 CA362376875 |
259 | H>Q | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA132896775 rs372020142 |
260 | D>G | No |
ClinGen ESP |
|
|
rs1231800939 CA362376882 |
260 | D>N | No |
ClinGen gnomAD |
|
|
CA362376906 rs1180658713 |
261 | P>Q | No |
ClinGen TOPMed |
|
| TCGA novel | 262 | A>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1162744165 CA362376912 |
262 | A>T | No |
ClinGen gnomAD |
|
|
rs375644526 CA3586688 |
264 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
RCV000522895 CA3586686 rs779147014 |
264 | R>W | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
CA362376953 rs779668675 |
265 | K>E | No |
ClinGen ExAC gnomAD |
|
|
CA3586689 rs779668675 |
265 | K>Q | No |
ClinGen ExAC gnomAD |
|
|
rs926544819 CA132896860 |
266 | R>K | No |
ClinGen TOPMed gnomAD |
|
|
CA362376965 rs1484463352 |
267 | D>Y | No |
ClinGen TOPMed |
|
|
CA362376983 rs1207602359 |
269 | K>E | No |
ClinGen TOPMed |
|
|
rs1311184017 CA362376992 |
269 | K>N | No |
ClinGen TOPMed |
|
|
CA3586690 rs369752734 |
270 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs369752734 CA132896881 |
270 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs143680535 CA132896883 |
271 | I>L | No |
ClinGen ESP TOPMed |
|
|
CA362377026 rs146632722 |
272 | A>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA362377041 rs1318350107 |
273 | A>D | No |
ClinGen gnomAD |
|
|
rs538600624 COSM1184348 CA3586693 |
273 | A>T | large_intestine [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC gnomAD |
|
rs1387618617 CA362377069 |
275 | K>E | No |
ClinGen gnomAD |
|
| TCGA novel | 275 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA362377085 rs1441626948 |
276 | Q>* | No |
ClinGen gnomAD |
|
|
rs1481659687 CA362377195 |
277 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
CA362377200 rs1180026816 |
277 | E>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1051398582 CA132897480 |
278 | Q>* | No |
ClinGen TOPMed |
|
|
rs1251388308 CA362377248 |
280 | K>Q | No |
ClinGen gnomAD |
|
|
CA362377271 rs1475633783 |
281 | V>G | No |
ClinGen gnomAD |
|
|
rs762364125 CA3586719 |
283 | R>K | No |
ClinGen ExAC gnomAD |
|
|
rs900615364 CA132897503 |
284 | E>G | No |
ClinGen Ensembl |
|
|
rs765821414 CA3586720 |
284 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1306832698 CA362377348 |
286 | G>D | No |
ClinGen gnomAD |
|
|
rs751011692 CA3586721 |
286 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1375726829 CA362377383 |
289 | T>A | No |
ClinGen gnomAD |
|
|
rs766423518 CA3586723 |
290 | V>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3586724 rs751742436 |
291 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1399598109 CA362377439 |
292 | Y>* | No |
ClinGen TOPMed |
|
|
rs1581997421 CA362377427 |
292 | Y>H | No |
ClinGen Ensembl |
|
|
rs371684746 CA3586727 |
293 | H>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs777656195 CA3586729 |
296 | S>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3586731 rs749289544 |
297 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs374994284 CA3586732 |
297 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs374994284 CA362377506 |
297 | R>P | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs749289544 CA3586730 |
297 | R>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3586733 rs745494614 |
298 | T>I | No |
ClinGen ExAC gnomAD |
|
|
rs771646034 CA3586734 |
299 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 303 | G>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs145082497 CA3586741 |
304 | G>W | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs774322603 CA3586742 |
305 | A>D | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 305 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1331795801 CA362377596 |
306 | P>A | No |
ClinGen gnomAD |
|
|
CA3586746 rs755898319 |
307 | C>Y | No |
ClinGen ExAC gnomAD |
|
|
CA362377618 rs1447784667 |
308 | T>A | No |
ClinGen gnomAD |
|
|
CA3586747 rs781124432 |
308 | T>S | No |
ClinGen ExAC gnomAD |
|
|
rs753742901 CA3586748 |
310 | L>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1220841590 CA362377650 |
312 | I>F | No |
ClinGen TOPMed |
|
|
rs778439107 CA3586750 |
313 | M>I | No |
ClinGen ExAC gnomAD |
|
|
rs757174910 CA362377660 |
313 | M>R | No |
ClinGen ExAC gnomAD |
|
|
rs757174910 CA3586749 |
313 | M>T | No |
ClinGen ExAC gnomAD |
|
|
rs1024596270 CA132897744 |
314 | L>W | No |
ClinGen Ensembl |
|
|
rs745351199 CA3586751 |
315 | D>A | No |
ClinGen ExAC gnomAD |
|
|
CA3586752 rs74448984 |
319 | T>A | No |
ClinGen ExAC gnomAD |
|
|
CA132897759 rs74448984 |
319 | T>P | No |
ClinGen ExAC gnomAD |
|
|
CA3586755 rs770222232 |
320 | A>G | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 320 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs773712777 CA3586756 |
321 | T>I | No |
ClinGen ExAC gnomAD |
|
|
CA3586757 rs749760731 |
322 | P>A | No |
ClinGen ExAC gnomAD |
|
|
CA3586760 rs759502234 |
323 | W>* | No |
ClinGen ExAC gnomAD |
|
|
CA3586759 rs774970799 |
323 | W>R | No |
ClinGen ExAC gnomAD |
|
|
rs767650033 CA3586761 |
324 | C>S | No |
ClinGen ExAC gnomAD |
|
|
rs1170239966 CA362377834 |
326 | F>V | No |
ClinGen gnomAD |
1 associated diseases with Q9UBV7
[MIM: 130070]: Ehlers-Danlos syndrome, spondylodysplastic type, 1 (EDSSPD1)
A form of Ehlers-Danlos syndrome, a group of connective tissue disorders characterized by skin hyperextensibility, articular hypermobility, and tissue fragility. EDSSPD1 is an autosomal recessive form characterized by short stature, developmental anomalies of the forearm bones and elbow, and bowing of extremities, in addition to the classic features of Ehlers-Danlos syndrome. {ECO:0000269|PubMed:10506123}. Note=The disease is caused by variants affecting the gene represented in this entry.
Without disease ID
- A form of Ehlers-Danlos syndrome, a group of connective tissue disorders characterized by skin hyperextensibility, articular hypermobility, and tissue fragility. EDSSPD1 is an autosomal recessive form characterized by short stature, developmental anomalies of the forearm bones and elbow, and bowing of extremities, in addition to the classic features of Ehlers-Danlos syndrome. {ECO:0000269|PubMed:10506123}. Note=The disease is caused by variants affecting the gene represented in this entry.
Functions
| Description | ||
|---|---|---|
| EC Number | 2.4.1.133 | Hexosyltransferases |
| Subcellular Localization |
|
|
| PANTHER Family | ||
| PANTHER Subfamily | ||
| PANTHER Protein Class | ||
| PANTHER Pathway Category | No pathway information available | |
4 GO annotations of cellular component
| Name | Definition |
|---|---|
| Golgi apparatus | A membrane-bound cytoplasmic organelle of the endomembrane system that further processes the core oligosaccharides (e.g. N-glycans) added to proteins in the endoplasmic reticulum and packages them into membrane-bound vesicles. The Golgi apparatus operates at the intersection of the secretory, lysosomal, and endocytic pathways. |
| Golgi cisterna membrane | The lipid bilayer surrounding any of the thin, flattened compartments that form the central portion of the Golgi complex. |
| Golgi membrane | The lipid bilayer surrounding any of the compartments of the Golgi apparatus. |
| integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
4 GO annotations of molecular function
| Name | Definition |
|---|---|
| beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity | Catalysis of the reaction: UDP-galactose + N-acetyl-beta-D-glucosaminylglycopeptide = UDP + beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminylglycopeptide. |
| galactosyltransferase activity | Catalysis of the transfer of a galactosyl group to an acceptor molecule, typically another carbohydrate or a lipid. |
| manganese ion binding | Binding to a manganese ion (Mn). |
| xylosylprotein 4-beta-galactosyltransferase activity | Catalysis of the reaction: UDP-galactose + O-beta-D-xylosylprotein = UDP + 4-beta-D-galactosyl-O-beta-D-xylosylprotein. |
10 GO annotations of biological process
| Name | Definition |
|---|---|
| carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. |
| glycosaminoglycan biosynthetic process | The chemical reactions and pathways resulting in the formation of glycosaminoglycans, any of a group of polysaccharides that contain amino sugars. |
| glycosaminoglycan metabolic process | The chemical reactions and pathways involving glycosaminoglycans, any of a group of polysaccharides that contain amino sugars. |
| glycosylation | The covalent attachment and further modification of carbohydrate residues to a substrate molecule. |
| negative regulation of fibroblast proliferation | Any process that stops, prevents, or reduces the frequency, rate or extent of multiplication or reproduction of fibroblast cells. |
| protein modification process | The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification). |
| protein N-linked glycosylation | A protein glycosylation process in which a carbohydrate or carbohydrate derivative unit is added to a protein via the N4 atom of peptidyl-asparagine, the omega-N of arginine, or the N1' atom peptidyl-tryptophan. |
| proteoglycan biosynthetic process | The chemical reactions and pathways resulting in the formation of proteoglycans, any glycoprotein in which the carbohydrate units are glycosaminoglycans. |
| proteoglycan metabolic process | The chemical reactions and pathways involving proteoglycans, any glycoprotein in which the carbohydrate units are glycosaminoglycans. |
| supramolecular fiber organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a supramolecular fiber, a polymer consisting of an indefinite number of protein or protein complex subunits that have polymerised to form a fiber-shaped structure. |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MFPSRRKAAQ | LPWEDGRSGL | LSGGLPRKCS | VFHLFVACLS | LGFFSLLWLQ | LSCSGDVARA |
| 70 | 80 | 90 | 100 | 110 | 120 |
| VRGQGQETSG | PPRACPPEPP | PEHWEEDASW | GPHRLAVLVP | FRERFEELLV | FVPHMRRFLS |
| 130 | 140 | 150 | 160 | 170 | 180 |
| RKKIRHHIYV | LNQVDHFRFN | RAALINVGFL | ESSNSTDYIA | MHDVDLLPLN | EELDYGFPEA |
| 190 | 200 | 210 | 220 | 230 | 240 |
| GPFHVASPEL | HPLYHYKTYV | GGILLLSKQH | YRLCNGMSNR | FWGWGREDDE | FYRRIKGAGL |
| 250 | 260 | 270 | 280 | 290 | 300 |
| QLFRPSGITT | GYKTFRHLHD | PAWRKRDQKR | IAAQKQEQFK | VDREGGLNTV | KYHVASRTAL |
| 310 | 320 | ||||
| SVGGAPCTVL | NIMLDCDKTA | TPWCTFS |