Q9SW63
Gene name |
RAP2-10 (ERF009, At4g36900, AP22.2, C7A10.460) |
Protein name |
Ethylene-responsive transcription factor RAP2-10 |
Names |
Protein RELATED TO APETALA2 10 |
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT4G36900 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q9SW63
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q9SW63-F1 | Predicted | AlphaFoldDB |
17 variants for Q9SW63
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| tmp_4_17389067_T_A | 18 | V>D | No | 1000Genomes | |
| ENSVATH14349128 | 21 | V>A | No | 1000Genomes | |
| ENSVATH14349129 | 22 | A>E | No | 1000Genomes | |
| tmp_4_17389078_G_C | 22 | A>P | No | 1000Genomes | |
| tmp_4_17389100_C_T | 29 | P>L | No | 1000Genomes | |
| ENSVATH14349133 | 79 | P>H | No | 1000Genomes | |
| tmp_4_17389285_G_A | 91 | G>R | No | 1000Genomes | |
| tmp_4_17389294_G_T | 94 | V>L | No | 1000Genomes | |
| ENSVATH12446221 | 106 | G>E | No | 1000Genomes | |
| ENSVATH02968134 | 133 | G>V | No | 1000Genomes | |
| tmp_4_17389427_A_T | 138 | H>L | No | 1000Genomes | |
| ENSVATH02968135 | 152 | D>N | No | 1000Genomes | |
| tmp_4_17389493_A_T | 160 | N>I | No | 1000Genomes | |
| tmp_4_17389511_G_T | 166 | C>F | No | 1000Genomes | |
| ENSVATH14349134 | 167 | S>N | No | 1000Genomes | |
| ENSVATH02968136 | 179 | L>F | No | 1000Genomes | |
| tmp_4_17389594_G_A | 194 | D>N | No | 1000Genomes |
No associated diseases with Q9SW63
1 regional properties for Q9SW63
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | AP2/ERF domain | 29 - 92 | IPR001471 |
1 GO annotations of cellular component
| Name | Definition |
|---|---|
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
2 GO annotations of molecular function
| Name | Definition |
|---|---|
| DNA-binding transcription factor activity | A transcription regulator activity that modulates transcription of gene sets via selective and non-covalent binding to a specific double-stranded genomic DNA sequence (sometimes referred to as a motif) within a cis-regulatory region. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. |
| transcription cis-regulatory region binding | Binding to a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon. |
3 GO annotations of biological process
| Name | Definition |
|---|---|
| ethylene-activated signaling pathway | The series of molecular signals generated by the reception of ethylene (ethene, C2H4) by a receptor and ending with modulation of a cellular process, e.g. transcription. |
| negative regulation of DNA-templated transcription | Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription. |
| positive regulation of leaf senescence | Any process that activates or increases the frequency, rate or extent of leaf senescence. |
3 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| O22174 | ERF008 | Ethylene-responsive transcription factor ERF008 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9FH94 | ERF010 | Ethylene-responsive transcription factor ERF010 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9SNE1 | ERF011 | Ethylene-responsive transcription factor ERF011 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| METATEVATV | VSTPAVTVAA | VATRKRDKPY | KGIRMRKWGK | WVAEIREPNK | RSRIWLGSYS |
| 70 | 80 | 90 | 100 | 110 | 120 |
| TPEAAARAYD | TAVFYLRGPS | ARLNFPELLA | GVTVTGGGGG | GVNGGGDMSA | AYIRRKAAEV |
| 130 | 140 | 150 | 160 | 170 | 180 |
| GAQVDALEAA | GAGGNRHHHH | HQHQRGNHDY | VDNHSDYRIN | DDLMECSSKE | GFKRCNGSLE |
| 190 | |||||
| RVDLNKLPDP | ETSDDD |