Q9SR06
Gene name |
CLPS3 (At3g04680, F7O18.15) |
Protein name |
Protein CLP1 homolog |
Names |
CLP-like protein 3, Protein CLP-SIMILAR PROTEIN 3 |
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT3G04680 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q9SR06
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q9SR06-F1 | Predicted | AlphaFoldDB |
13 variants for Q9SR06
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| ENSVATH02112429 | 14 | S>G | No | 1000Genomes | |
| tmp_3_1272345_T_A | 24 | K>M | No | 1000Genomes | |
| ENSVATH10492023 | 68 | P>L | No | 1000Genomes | |
| tmp_3_1271500_C_T | 119 | A>T | No | 1000Genomes | |
| tmp_3_1271488_T_C | 123 | N>D | No | 1000Genomes | |
| ENSVATH05771088 | 192 | E>D | No | 1000Genomes | |
| ENSVATH13869414 | 207 | A>T | No | 1000Genomes | |
| ENSVATH05771086 | 211 | M>V | No | 1000Genomes | |
| tmp_3_1270790_C_T | 263 | D>N | No | 1000Genomes | |
| tmp_3_1270426_T_C | 355 | K>R | No | 1000Genomes | |
| ENSVATH05771079 | 374 | V>I | No | 1000Genomes | |
| ENSVATH02112398 | 414 | Q>E | No | 1000Genomes | |
| ENSVATH02112397 | 414 | Q>L | No | 1000Genomes |
No associated diseases with Q9SR06
2 GO annotations of cellular component
| Name | Definition |
|---|---|
| mRNA cleavage factor complex | Any macromolecular complex involved in cleavage or polyadenylation of mRNA molecules. |
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
2 GO annotations of molecular function
| Name | Definition |
|---|---|
| ATP binding | Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
| polynucleotide 5'-hydroxyl-kinase activity | Catalysis of the reaction: NTP + 5'-dephosphopolynucleotide = NDP + 5'-phosphopolynucleotide. The polynucleotide may be DNA or RNA. |
7 GO annotations of biological process
| Name | Definition |
|---|---|
| flower development | The process whose specific outcome is the progression of the flower over time, from its formation to the mature structure. The flower is the reproductive structure in a plant, and its development begins with the transition of the vegetative or inflorescence meristem into a floral meristem. |
| mRNA polyadenylation | The enzymatic addition of a sequence of 40-200 adenylyl residues at the 3' end of a eukaryotic mRNA primary transcript. |
| mRNA processing | Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. |
| phyllome development | The process whose specific outcome is the progression of a phyllome over time, from its formation to the mature structure. A phyllome is a collective term for all the different types of leaves appearing on plants. |
| RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
| tRNA splicing, via endonucleolytic cleavage and ligation | Splicing of tRNA substrates via recognition of the folded RNA structure that brings the 5' and 3' splice sites into proximity and cleavage of the RNA at both the 3' and 5' splice sites by an endonucleolytic mechanism, followed by ligation of the exons. |
| vegetative to reproductive phase transition of meristem | The process involved in transforming a meristem that produces vegetative structures, such as leaves, into a meristem that produces reproductive structures, such as a flower or an inflorescence. |
1 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q08685 | CLP1 | mRNA cleavage and polyadenylation factor CLP1 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MAYGGPSMNP | PALSGAVPGS | ANLKQVKLER | ESELRIEVSE | EPLRLRVVNG | TAEIFGSELP |
| 70 | 80 | 90 | 100 | 110 | 120 |
| PEIWRTFPPR | MKFAVFTWYG | ATIEMDGVTE | TDYTADETPM | VSYINVHAIL | DARRRFAKAS |
| 130 | 140 | 150 | 160 | 170 | 180 |
| TSNDPESSQG | PRVIVVGPTD | SGKSTLTKML | LSWAAKQGWR | PTFVDLDVGQ | GSITIPGSIA |
| 190 | 200 | 210 | 220 | 230 | 240 |
| AAPIEMPLDP | VEGFPLDMAL | VYYYGHASPN | MNVELYKALV | KELAQVLEKQ | FVGNPESRAA |
| 250 | 260 | 270 | 280 | 290 | 300 |
| GMVINTMGWI | EGIGYELLLH | AIDTFNASVV | LVLGQEKLFS | RLKDVLRSKS | NVDVVKLHKS |
| 310 | 320 | 330 | 340 | 350 | 360 |
| GGVVARVKEV | RKRSRNFKIQ | EYFYGLSKEL | SPYANTSSFS | DLQVFRIGGG | PQAPKSALPA |
| 370 | 380 | 390 | 400 | 410 | 420 |
| GSTSVSNPLR | VTPVNIDDRD | LLHSVLAVSY | AEEPDQIISS | NVSGFVYVTE | VNVQKKKITY |
| 430 | 440 | ||||
| LAPSPGTLPS | KLLVAGSLAW | LESV |