Q9SIY5
Gene name |
RER5 |
Protein name |
Protein RETICULATA-RELATED 5, chloroplastic |
Names |
|
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT2G40400 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q9SIY5
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q9SIY5-F1 | Predicted | AlphaFoldDB |
38 variants for Q9SIY5
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| tmp_2_16869384_G_T | 8 | G>W | No | 1000Genomes | |
| ENSVATH01972991 | 46 | N>T | No | 1000Genomes | |
| ENSVATH05690761 | 48 | V>I | No | 1000Genomes | |
| ENSVATH05690763 | 55 | H>L | No | 1000Genomes | |
| ENSVATH05690764 | 64 | A>T | No | 1000Genomes | |
| ENSVATH13594810 | 80 | A>V | No | 1000Genomes | |
| ENSVATH05690767 | 87 | I>V | No | 1000Genomes | |
| ENSVATH13594811 | 90 | A>P | No | 1000Genomes | |
| tmp_2_16869633_G_A | 91 | A>T | No | 1000Genomes | |
| ENSVATH05690768 | 94 | E>A | No | 1000Genomes | |
| ENSVATH01972992 | 97 | A>E | No | 1000Genomes | |
| tmp_2_16869673_C_T | 104 | P>L | No | 1000Genomes | |
| ENSVATH05690769 | 106 | A>T | No | 1000Genomes | |
| ENSVATH05690770 | 111 | P>S | No | 1000Genomes | |
| ENSVATH01972993 | 142 | R>I | No | 1000Genomes | |
| ENSVATH05690771 | 143 | V>M | No | 1000Genomes | |
| ENSVATH13594812 | 165 | D>E | No | 1000Genomes | |
| tmp_2_16869959_G_C | 199 | L>F | No | 1000Genomes | |
| tmp_2_16870111_C_T | 224 | P>S | No | 1000Genomes | |
| ENSVATH05690773 | 225 | V>I | No | 1000Genomes | |
| ENSVATH00267439 | 236 | S>I | No | 1000Genomes | |
| tmp_2_16870404_T_G | 273 | L>V | No | 1000Genomes | |
| tmp_2_16870411_C_T | 275 | T>I | No | 1000Genomes | |
| ENSVATH05690777 | 276 | P>S | No | 1000Genomes | |
| tmp_2_16870581_G_A | 332 | V>I | No | 1000Genomes | |
| tmp_2_16870597_G_A | 337 | G>E | No | 1000Genomes | |
| ENSVATH14601729 | 378 | D>Y | No | 1000Genomes | |
| ENSVATH00267444 | 499 | E>K | No | 1000Genomes | |
| tmp_2_16871579_C_G | 510 | D>E | No | 1000Genomes | |
| tmp_2_16871670_G_A | 541 | D>N | No | 1000Genomes | |
| ENSVATH14601732 | 553 | R>K | No | 1000Genomes | |
| ENSVATH00267445 | 576 | S>N | No | 1000Genomes | |
| tmp_2_16872205_C_T | 657 | H>Y | No | 1000Genomes | |
| ENSVATH13594865 | 662 | E>G | No | 1000Genomes | |
| tmp_2_16872293_C_G | 686 | T>S | No | 1000Genomes | |
| tmp_2_16872445_C_G | 695 | S>C | No | 1000Genomes | |
| tmp_2_16872525_A_T | 722 | S>C | No | 1000Genomes | |
| tmp_2_16872528_A_G | 723 | T>A | No | 1000Genomes |
No associated diseases with Q9SIY5
1 regional properties for Q9SIY5
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | Haem-binding uptake, Tiki superfamily, ChaN | 143 - 376 | IPR007314 |
3 GO annotations of cellular component
| Name | Definition |
|---|---|
| chloroplast | A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. |
| chloroplast membrane | Either of the lipid bilayers that surround a chloroplast and form the chloroplast envelope. |
| integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
No GO annotations of molecular function
| Name | Definition |
|---|---|
| No GO annotations for molecular function |
2 GO annotations of biological process
| Name | Definition |
|---|---|
| chlorophyll biosynthetic process | The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors. |
| response to brassinosteroid | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a brassinosteroid stimulus. |
1 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q8RWG3 | RER6 | Protein RETICULATA-RELATED 6, chloroplastic | Arabidopsis thaliana (Mouse-ear cress) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MKPTTNGGLL | ASQSSSSFSF | PRFRGQLPII | FSANNNQKKK | NLPNPNVVTL | CLHSHSNVSS |
| 70 | 80 | 90 | 100 | 110 | 120 |
| SQIAVTRRAI | LVAPPLLAAA | ASLFLSISSA | ASAETSAESV | ALPPVATAPP | PPPVEKEEAI |
| 130 | 140 | 150 | 160 | 170 | 180 |
| TSRIYDASVL | GEPMAVGKDK | KRVWEKLLNA | RIVYLGEAEQ | VPTRDDKVLE | LEIVRNLRKR |
| 190 | 200 | 210 | 220 | 230 | 240 |
| CIESDRQLSL | ALEAFPLDLQ | EQLNQYMDKR | MDGEVLKSYV | SHWPVQRWQE | YEPLLSYCRD |
| 250 | 260 | 270 | 280 | 290 | 300 |
| NGVKLIACGT | PLKVLRTVQA | EGIRGLSESE | RKLYTPPAGS | GFISGFTSFS | RSSSLNMNPL |
| 310 | 320 | 330 | 340 | 350 | 360 |
| TQIVPFGPSS | YLSAQARVVE | DHTMSQVIVQ | AVADGGGTGM | LVVVTGANHV | EYGSRGTGLP |
| 370 | 380 | 390 | 400 | 410 | 420 |
| ARISRKIPKK | SQLVVLLDPE | RQFLRKEGES | PVADFLWYSA | ARPCSRNCFD | RAEIARVMNA |
| 430 | 440 | 450 | 460 | 470 | 480 |
| AGRRRDALPQ | DIQKGLDLGL | VSPEILQNFF | DLEQYPLISE | LTQRFQGFRE | RLLADPKFLN |
| 490 | 500 | 510 | 520 | 530 | 540 |
| RLAIEEAISI | TTTLVAQYEK | RKENFFEELD | YVITDSVRAS | VVDFFTVWLP | APTLSFISYA |
| 550 | 560 | 570 | 580 | 590 | 600 |
| DETIGPNSID | ALRGLLGSIP | DNAFQKSLGG | QEWTLSLRIA | SVIIGGLKLA | GVGVVSSFAA |
| 610 | 620 | 630 | 640 | 650 | 660 |
| VGSSNALYAI | RKFIKPELGV | GEQAKRSPML | KTALVYGGYL | GTSSNIRYQI | IAGLIEHRIS |
| 670 | 680 | 690 | 700 | 710 | 720 |
| DELSSQPLLV | NMISFVVRVA | NSYFGTQQWI | DLARSTGLQT | QKSVTTSNQI | PEVASQSTVE |
| 730 | |||||
| YSTTEEASMD | DLKNQ |