Q9SDQ3
Gene name |
SCL1 (At1g21450, F24J8.8) |
Protein name |
Scarecrow-like protein 1 |
Names |
AtSCL1, GRAS family protein 4, AtGRAS-4 |
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT1G21450 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q9SDQ3
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q9SDQ3-F1 | Predicted | AlphaFoldDB |
31 variants for Q9SDQ3
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| ENSVATH04615901 | 14 | R>S | No | 1000Genomes | |
| ENSVATH04615902 | 28 | R>G | No | 1000Genomes | |
| ENSVATH11709375 | 57 | N>T | No | 1000Genomes | |
| ENSVATH04615905 | 93 | V>F | No | 1000Genomes | |
| ENSVATH00035719 | 120 | L>F | No | 1000Genomes | |
| ENSVATH04615907 | 136 | A>V | No | 1000Genomes | |
| ENSVATH04615908 | 180 | M>K | No | 1000Genomes | |
| ENSVATH13938134 | 191 | E>G | No | 1000Genomes | |
| ENSVATH04615910 | 193 | E>* | No | 1000Genomes | |
| tmp_1_7510298_A_C | 193 | E>A | No | 1000Genomes | |
| tmp_1_7510333_G_A | 205 | A>T | No | 1000Genomes | |
| ENSVATH01082118 | 238 | L>S | No | 1000Genomes | |
| tmp_1_7510477_T_G | 253 | S>A | No | 1000Genomes | |
| ENSVATH11709536 | 328 | E>V | No | 1000Genomes | |
| tmp_1_7510795_C_T | 359 | R>C | No | 1000Genomes | |
| ENSVATH04615913 | 369 | E>D | No | 1000Genomes | |
| ENSVATH00035725 | 371 | V>F | No | 1000Genomes | |
| ENSVATH00035725 | 371 | V>I | No | 1000Genomes | |
| tmp_1_7510856_G_A | 379 | R>K | No | 1000Genomes | |
| ENSVATH04615915 | 413 | L>V | No | 1000Genomes | |
| ENSVATH04615916 | 473 | F>Y | No | 1000Genomes | |
| ENSVATH01082124 | 478 | E>A | No | 1000Genomes | |
| tmp_1_7511167_T_C | 483 | Y>H | No | 1000Genomes | |
| ENSVATH04615917 | 484 | S>A | No | 1000Genomes | |
| tmp_1_7511312_C_T | 531 | A>V | No | 1000Genomes | |
| ENSVATH00035735 | 545 | P>S | No | 1000Genomes | |
| ENSVATH00035736 | 551 | K>R | No | 1000Genomes | |
| tmp_1_7511378_C_A | 553 | T>N | No | 1000Genomes | |
| tmp_1_7511398_A_G | 560 | I>V | No | 1000Genomes | |
| ENSVATH13938205 | 568 | Y>N | No | 1000Genomes | |
| tmp_1_7511425_A_G | 569 | K>E | No | 1000Genomes |
No associated diseases with Q9SDQ3
No regional properties for Q9SDQ3
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| No domain, repeats, and functional sites for Q9SDQ3 | |||
1 GO annotations of cellular component
| Name | Definition |
|---|---|
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
3 GO annotations of molecular function
| Name | Definition |
|---|---|
| DNA-binding transcription factor activity | A transcription regulator activity that modulates transcription of gene sets via selective and non-covalent binding to a specific double-stranded genomic DNA sequence (sometimes referred to as a motif) within a cis-regulatory region. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. |
| sequence-specific DNA binding | Binding to DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
| transcription cis-regulatory region binding | Binding to a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon. |
1 GO annotations of biological process
| Name | Definition |
|---|---|
| regulation of DNA-templated transcription | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MVEQTVVREH | IKARVMSLVR | SAEPSSYRNP | KLYTLNENGN | NNGVSSAQIF | DPDRSKNPCL |
| 70 | 80 | 90 | 100 | 110 | 120 |
| TDDSYPSQSY | EKYFLDSPTD | EFVQHPIGSG | ASVSSFGSLD | SFPYQSRPVL | GCSMEFQLPL |
| 130 | 140 | 150 | 160 | 170 | 180 |
| DSTSTSSTRL | LGDYQAVSYS | PSMDVVEEFD | DEQMRSKIQE | LERALLGDED | DKMVGIDNLM |
| 190 | 200 | 210 | 220 | 230 | 240 |
| EIDSEWSYQN | ESEQHQDSPK | ESSSADSNSH | VSSKEVVSQA | TPKQILISCA | RALSEGKLEE |
| 250 | 260 | 270 | 280 | 290 | 300 |
| ALSMVNELRQ | IVSIQGDPSQ | RIAAYMVEGL | AARMAASGKF | IYRALKCKEP | PSDERLAAMQ |
| 310 | 320 | 330 | 340 | 350 | 360 |
| VLFEVCPCFK | FGFLAANGAI | LEAIKGEEEV | HIIDFDINQG | NQYMTLIRSI | AELPGKRPRL |
| 370 | 380 | 390 | 400 | 410 | 420 |
| RLTGIDDPES | VQRSIGGLRI | IGLRLEQLAE | DNGVSFKFKA | MPSKTSIVSP | STLGCKPGET |
| 430 | 440 | 450 | 460 | 470 | 480 |
| LIVNFAFQLH | HMPDESVTTV | NQRDELLHMV | KSLNPKLVTV | VEQDVNTNTS | PFFPRFIEAY |
| 490 | 500 | 510 | 520 | 530 | 540 |
| EYYSAVFESL | DMTLPRESQE | RMNVERQCLA | RDIVNIVACE | GEERIERYEA | AGKWRARMMM |
| 550 | 560 | 570 | 580 | 590 | |
| AGFNPKPMSA | KVTNNIQNLI | KQQYCNKYKL | KEEMGELHFC | WEEKSLIVAS | AWR |