Q9FLN4
Gene name |
RPL27 (At5g40950, MEE6.2) |
Protein name |
50S ribosomal protein L27, chloroplastic |
Names |
CL27 |
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT5G40950 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q9FLN4
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q9FLN4-F1 | Predicted | AlphaFoldDB |
23 variants for Q9FLN4
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| ENSVATH00692402 | 4 | A>E | No | 1000Genomes | |
| ENSVATH07285906 | 5 | T>I | No | 1000Genomes | |
| ENSVATH12306350 | 8 | S>T | No | 1000Genomes | |
| ENSVATH12306351 | 12 | I>L | No | 1000Genomes | |
| tmp_5_16410910_C_A | 15 | F>L | No | 1000Genomes | |
| tmp_5_16410914_G_T | 17 | G>C | No | 1000Genomes | |
| ENSVATH00692404 | 30 | D>E | No | 1000Genomes | |
| ENSVATH07285907 | 32 | S>N | No | 1000Genomes | |
| tmp_5_16410965_T_C | 34 | S>P | No | 1000Genomes | |
| ENSVATH03307023 | 38 | S>T | No | 1000Genomes | |
| tmp_5_16410990_C_G | 42 | T>S | No | 1000Genomes | |
| ENSVATH00692405 | 45 | L>V | No | 1000Genomes | |
| tmp_5_16411005_A_T | 47 | N>I | No | 1000Genomes | |
| ENSVATH07285908 | 48 | L>F | No | 1000Genomes | |
| ENSVATH00692406 | 52 | I>V | No | 1000Genomes | |
| ENSVATH07285909 | 55 | T>K | No | 1000Genomes | |
| ENSVATH08542001 | 168 | A>V | No | 1000Genomes | |
| ENSVATH03307073 | 174 | S>T | No | 1000Genomes | |
| ENSVATH00692412 | 183 | V>I | No | 1000Genomes | |
| ENSVATH03307077 | 189 | V>I | No | 1000Genomes | |
| ENSVATH07285925 | 192 | A>G | No | 1000Genomes | |
| ENSVATH09934710 | 196 | P>S | No | 1000Genomes | |
| ENSVATH07285926 | 197 | E>D | No | 1000Genomes |
No associated diseases with Q9FLN4
1 regional properties for Q9FLN4
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| conserved_site | Ribosomal protein L27, conserved site | 91 - 105 | IPR018261 |
7 GO annotations of cellular component
| Name | Definition |
|---|---|
| chloroplast | A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. |
| chloroplast envelope | The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space. |
| chloroplast stroma | The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. |
| plastid | Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. |
| ribonucleoprotein complex | A macromolecular complex that contains both RNA and protein molecules. |
| ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. |
| thylakoid | A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. |
2 GO annotations of molecular function
| Name | Definition |
|---|---|
| mRNA binding | Binding to messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. |
| structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. |
1 GO annotations of biological process
| Name | Definition |
|---|---|
| translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
2 homologous proteins in AiPD
| 10 | 20 | 30 | 40 | 50 | 60 |
| MAMATSMSLN | LIGAFKGLSL | SSTSSFLRGD | LSFSPKTSFT | VTLPLENLQA | PIPLTIESAH |
| 70 | 80 | 90 | 100 | 110 | 120 |
| KKGAGSTKNG | RDSPGQRLGV | KIYGDQVAKP | GAIIVRQRGT | KFHAGKNVGI | GKDHTIFSLI |
| 130 | 140 | 150 | 160 | 170 | 180 |
| DGLVKFEKFG | PDRKKISVYP | REIVPENPNS | YRARKRENFR | LQREKKKARR | ENYSYTLPTP |
| 190 | |||||
| ELVLASASVD | DAEANPEC |