Q969S8
Gene name |
HDAC10 |
Protein name |
Polyamine deacetylase HDAC10 |
Names |
Histone deacetylase 10, HD10 |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:83933 |
EC number |
3.5.1.48: In linear amides |
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q969S8
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q969S8-F1 | Predicted | AlphaFoldDB |
679 variants for Q969S8
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
CA10310132 rs373306603 |
2 | G>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA10310133 rs373306603 |
2 | G>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA412129097 rs1417718854 |
6 | V>L | No |
ClinGen TOPMed gnomAD |
|
|
rs1343025342 CA412129081 |
7 | Y>C | No |
ClinGen TOPMed gnomAD |
|
|
CA412129047 rs988481660 |
9 | E>D | No |
ClinGen TOPMed gnomAD |
|
|
rs1445401937 CA412129057 |
9 | E>Q | No |
ClinGen gnomAD |
|
|
rs1224387642 CA412129044 |
10 | D>N | No |
ClinGen TOPMed |
|
|
CA10310128 rs760597316 |
11 | M>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs531299630 CA10310131 |
11 | M>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA10310129 rs763825090 |
11 | M>T | No |
ClinGen ExAC gnomAD |
|
|
rs531299630 CA10310130 |
11 | M>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs147929426 CA10310126 |
12 | T>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA10310127 rs147929426 |
12 | T>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1429968971 CA412128988 |
14 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
rs542194192 CA10310124 |
15 | R>W | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs769772265 CA10310123 |
17 | L>F | No |
ClinGen ExAC gnomAD |
|
|
CA412128945 rs1419352946 |
18 | W>C | No |
ClinGen gnomAD |
|
|
CA325496548 rs929146386 |
20 | D>G | No |
ClinGen Ensembl |
|
|
CA412128864 rs1262339510 |
21 | P>A | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA412128858 rs1601633363 |
21 | P>L | No |
ClinGen Ensembl |
|
|
CA412128832 rs1330779951 |
23 | C>Y | No |
ClinGen gnomAD |
|
|
rs759311800 CA10310106 |
25 | I>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs146669691 CA10310104 |
28 | P>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA412128771 rs1390337916 |
28 | P>T | No |
ClinGen gnomAD |
|
|
rs770892230 CA10310103 |
29 | E>A | No |
ClinGen ExAC gnomAD |
|
|
CA10310102 rs748221994 |
29 | E>D | No |
ClinGen ExAC gnomAD |
|
|
rs1357873082 CA412128757 |
30 | R>L | No |
ClinGen gnomAD |
|
| TCGA novel | 32 | T>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA412128741 rs1458055959 |
33 | A>S | No |
ClinGen gnomAD |
|
|
CA412128743 rs1458055959 |
33 | A>T | No |
ClinGen gnomAD |
|
|
CA412128737 rs1601633302 |
34 | A>S | No |
ClinGen Ensembl |
|
|
CA10310098 rs145717240 CA10310099 |
36 | D>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA325496464 rs778584488 |
36 | D>G | No |
ClinGen Ensembl |
|
|
CA325496466 rs370995976 |
36 | D>H | No |
ClinGen ESP |
|
|
CA10310097 rs758693077 |
37 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA412128718 rs758693077 |
37 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA10310096 rs746238527 |
39 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA412128711 rs1183661007 |
39 | R>W | No |
ClinGen gnomAD |
|
|
rs757751469 CA10310094 |
41 | R>C | No |
ClinGen ExAC gnomAD |
|
|
rs1466051194 CA412128695 |
42 | G>S | No |
ClinGen gnomAD |
|
|
CA412128686 rs1321934336 |
43 | L>P | No |
ClinGen gnomAD |
|
|
CA10310091 rs200670896 |
43 | L>V | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs752405222 CA10310090 |
44 | E>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA412128679 rs377731358 |
44 | E>D | No |
ClinGen ESP TOPMed gnomAD |
|
|
CA412128685 rs752405222 |
44 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs752405222 CA412128684 |
44 | E>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1369304799 CA412128672 |
45 | Q>H | No |
ClinGen TOPMed |
|
|
CA412128678 rs1381261088 |
45 | Q>K | No |
ClinGen gnomAD |
|
|
CA412128669 rs1436428726 |
46 | R>K | No |
ClinGen gnomAD |
|
|
CA10310088 rs767278167 |
46 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1287484977 CA412128661 |
47 | C>Y | No |
ClinGen gnomAD |
|
|
CA412128653 rs751343126 |
48 | L>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs751343126 CA10310086 |
48 | L>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA10310085 rs376109598 |
49 | R>W | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA412128636 rs1384559136 |
51 | S>L | No |
ClinGen gnomAD |
|
|
CA10310083 rs773086569 |
53 | R>C | No |
ClinGen ExAC gnomAD |
|
|
CA412128627 rs1272372644 |
53 | R>H | No |
ClinGen TOPMed |
|
|
CA412128628 rs773086569 |
53 | R>S | No |
ClinGen ExAC gnomAD |
|
|
CA10310079 rs772325030 |
54 | E>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA10310078 rs746257931 |
54 | E>D | No |
ClinGen ExAC gnomAD |
|
|
CA10310080 rs772325030 |
54 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA10310076 rs771151012 |
56 | S>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1488604639 CA412128611 |
56 | S>A | No |
ClinGen gnomAD |
|
|
rs771151012 CA10310077 |
56 | S>L | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 58 | E>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs778355683 CA10310074 |
59 | E>G | No |
ClinGen ExAC gnomAD |
|
|
rs1358163648 CA412128593 |
59 | E>K | No |
ClinGen gnomAD |
|
|
rs947893289 CA325496393 |
61 | G>R | No |
ClinGen TOPMed gnomAD |
|
|
rs947893289 CA412128581 |
61 | G>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1293899918 CA412128566 |
63 | V>G | No |
ClinGen TOPMed gnomAD |
|
|
rs781035682 CA10310071 |
64 | H>R | No |
ClinGen ExAC gnomAD |
|
|
CA10310072 rs752237682 |
64 | H>Y | No |
ClinGen ExAC gnomAD |
|
|
CA412128556 rs1170052062 |
65 | S>N | No |
ClinGen TOPMed |
|
|
CA412128555 rs1170052062 |
65 | S>T | No |
ClinGen TOPMed |
|
|
rs1359765715 CA412128540 |
66 | P>T | No |
ClinGen gnomAD |
|
|
rs142006720 CA10310041 |
67 | E>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs12169695 CA325496189 |
71 | L>V | No |
ClinGen ExAC gnomAD |
|
|
CA412128498 rs1187625060 |
73 | R>G | No |
ClinGen gnomAD |
|
|
rs376758414 CA412128491 |
74 | E>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA10310039 rs376758414 |
74 | E>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1461182265 CA412128471 |
76 | Q>H | No |
ClinGen gnomAD |
|
|
rs1202192070 CA412128474 |
76 | Q>R | No |
ClinGen gnomAD |
|
|
rs1269127383 CA412128470 |
77 | V>I | No |
ClinGen TOPMed gnomAD |
|
|
rs1269127383 CA412128469 |
77 | V>L | No |
ClinGen TOPMed gnomAD |
|
|
rs763456852 CA10310038 |
79 | G>D | No |
ClinGen ExAC gnomAD |
|
|
rs1393668570 CA412128459 |
79 | G>S | No |
ClinGen gnomAD |
|
|
rs148308549 CA10310036 |
80 | K>E | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs748690794 CA412128446 |
81 | E>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA10310035 rs748690794 |
81 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs186782930 CA412128415 |
85 | A>G | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs186782930 CA10310034 |
85 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
rs779815335 CA10310031 |
86 | L>P | No |
ClinGen ExAC gnomAD |
|
|
CA325496165 CA325496162 rs1006054475 |
88 | G>R | No |
ClinGen TOPMed gnomAD |
|
|
CA412128400 rs1348685120 |
89 | Q>K | No |
ClinGen TOPMed |
|
|
rs756987194 CA412128379 |
91 | D>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA325496157 rs865787379 |
91 | D>Y | No |
ClinGen Ensembl |
|
|
rs753817301 CA10310025 COSM1209371 |
92 | A>T | large_intestine [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
CA10310024 rs763931664 |
93 | I>F | No |
ClinGen ExAC gnomAD |
|
|
rs368162152 CA412128370 |
93 | I>S | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs368162152 CA10310023 |
93 | I>T | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA412128371 rs763931664 |
93 | I>V | No |
ClinGen ExAC gnomAD |
|
|
rs544052772 CA10310022 |
96 | H>Y | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
| rs763302996 | 97 | P>= | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA412128344 rs1210536214 |
97 | P>A | No |
ClinGen gnomAD |
|
|
rs377256255 CA10310021 |
97 | P>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA412128342 rs1210536214 |
97 | P>S | No |
ClinGen gnomAD |
|
|
rs1306831147 CA412127953 |
98 | S>G | No |
ClinGen gnomAD |
|
|
rs770545624 CA10309991 |
98 | S>T | No |
ClinGen ExAC gnomAD |
|
|
CA412127934 rs1601630936 |
99 | T>P | No |
ClinGen Ensembl |
|
|
rs548926197 CA325494804 |
101 | H>R | No |
ClinGen TOPMed gnomAD |
|
|
rs1601630923 CA412127892 |
101 | H>Y | No |
ClinGen Ensembl |
|
|
CA412127880 rs538020281 |
102 | C>* | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA412127886 rs1228601775 |
102 | C>S | No |
ClinGen gnomAD |
|
|
CA412127878 rs200223518 |
103 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA10309988 rs200223518 |
103 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA10309987 rs143228101 |
103 | A>V | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA412127872 rs758620639 |
104 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs750519831 CA10309984 |
104 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs758620639 CA10309985 |
104 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs779328803 CA10309983 |
105 | L>V | No |
ClinGen ExAC gnomAD |
|
|
CA325494787 rs773955276 |
106 | A>P | No |
ClinGen Ensembl |
|
|
rs981565329 CA325494780 |
106 | A>V | No |
ClinGen Ensembl |
|
|
CA10309981 rs149121852 |
107 | A>P | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA10309980 rs149121852 |
107 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1237941857 CA412127845 |
108 | G>R | No |
ClinGen gnomAD |
|
|
CA10309979 rs761034142 |
109 | A>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA412127836 rs761034142 |
109 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1555912411 CA412127825 |
110 | G>E | No |
ClinGen Ensembl |
|
|
rs1459853283 CA412127826 |
110 | G>R | No |
ClinGen gnomAD |
|
|
rs1173273384 CA412127810 |
112 | Q>E | No |
ClinGen TOPMed |
|
|
rs773816736 CA10309975 |
113 | L>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs759092234 CA10309976 |
113 | L>V | No |
ClinGen ExAC gnomAD |
|
|
CA412127771 rs1569137019 |
115 | D>H | No |
ClinGen Ensembl |
|
|
rs1389114026 CA412127758 |
116 | A>P | No |
ClinGen TOPMed |
|
|
rs1389114026 CA412127757 |
116 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
CA10309972 rs199906150 |
117 | V>M | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs562621796 CA10309971 |
118 | L>F | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs747973574 CA10309970 |
120 | G>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1457974680 CA412127682 |
121 | A>V | No |
ClinGen gnomAD |
|
| TCGA novel | 124 | N>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA10309968 rs768694539 |
125 | G>E | No |
ClinGen ExAC gnomAD |
|
|
CA412127629 rs768694539 |
125 | G>V | No |
ClinGen ExAC gnomAD |
|
|
rs924135314 CA325494742 |
126 | L>F | No |
ClinGen TOPMed |
|
|
CA412127517 rs1233254098 |
131 | P>L | No |
ClinGen TOPMed |
|
|
rs777904530 CA10309945 |
131 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs777904530 CA10309946 |
131 | P>T | No |
ClinGen ExAC gnomAD |
|
|
rs756324746 CA10309944 |
132 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs1228769869 CA412127513 |
132 | P>S | No |
ClinGen gnomAD |
|
|
CA10309942 rs145098215 |
133 | G>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA412127489 rs1601630253 |
134 | H>P | No |
ClinGen Ensembl |
|
|
CA412127466 rs1305037977 |
136 | G>D | No |
ClinGen gnomAD |
|
|
CA325494574 rs778778691 |
138 | R>S | No |
ClinGen Ensembl |
|
|
rs115099639 CA10309940 |
139 | A>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA325494569 rs896970280 |
140 | A>P | No |
ClinGen TOPMed |
|
|
rs752069436 CA10309939 |
142 | N>S | No |
ClinGen ExAC gnomAD |
|
|
CA10309937 rs757906225 |
143 | G>R | No |
ClinGen ExAC gnomAD |
|
|
rs1473706458 CA412127373 |
145 | C>R | No |
ClinGen TOPMed |
|
|
CA412127362 rs1555048 |
145 | C>W | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs764839278 CA10309935 |
146 | V>M | No |
ClinGen ExAC gnomAD |
|
|
CA412127338 rs1569136802 |
148 | N>H | No |
ClinGen Ensembl |
|
|
rs201709469 CA10309931 |
150 | V>L | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs201709469 CA10309932 |
150 | V>M | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA325494491 rs572231833 |
151 | A>V | No |
ClinGen gnomAD |
|
|
CA325494482 rs1045919963 |
155 | A>T | No |
ClinGen gnomAD |
|
|
CA10309928 rs560598713 |
156 | H>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs368728482 CA10309929 |
156 | H>Y | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs769811862 CA10309926 |
157 | A>D | No |
ClinGen ExAC gnomAD |
|
|
CA412127246 rs1345036682 |
157 | A>T | No |
ClinGen gnomAD |
|
|
rs769811862 CA412127242 |
157 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs748379053 CA10309925 |
158 | K>R | No |
ClinGen ExAC gnomAD |
|
|
CA412127232 rs1297421261 |
159 | Q>* | No |
ClinGen gnomAD |
|
|
rs781328750 CA10309924 |
160 | K>R | No |
ClinGen ExAC gnomAD |
|
|
CA412127213 rs769079660 |
161 | H>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs377561552 CA10309922 |
162 | G>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA412127203 rs1407629547 |
163 | L>P | No |
ClinGen TOPMed |
|
|
rs750856870 CA10309919 |
164 | H>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA10309899 rs756884230 |
165 | R>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1045973968 CA325494172 |
166 | I>F | No |
ClinGen TOPMed gnomAD |
|
|
rs1201914857 CA412127168 |
167 | L>P | No |
ClinGen TOPMed |
|
|
CA10309897 rs777606755 |
168 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs372385714 CA325494147 |
169 | V>M | No |
ClinGen ESP TOPMed gnomAD |
|
|
CA10309895 rs752240088 |
172 | D>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA412127119 rs1262590879 |
174 | H>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA325494126 rs1019549869 |
174 | H>R | No |
ClinGen TOPMed |
|
|
CA412127123 rs1445485176 |
174 | H>Y | No |
ClinGen TOPMed gnomAD |
|
|
rs1223236424 CA412127116 |
175 | H>Y | No |
ClinGen gnomAD |
|
|
rs767356391 CA10309894 |
176 | G>S | No |
ClinGen ExAC gnomAD |
|
|
rs1404352996 CA412127105 |
177 | Q>* | No |
ClinGen TOPMed |
|
|
CA412127101 rs1289444326 |
177 | Q>R | No |
ClinGen gnomAD |
|
|
CA10309892 rs751584968 |
178 | G>R | No |
ClinGen ExAC gnomAD |
|
|
CA10309890 rs761933488 |
180 | Q>H | No |
ClinGen ExAC gnomAD |
|
|
rs764120638 CA10309888 |
181 | Y>* | No |
ClinGen ExAC gnomAD |
|
|
rs776664930 CA10309889 |
181 | Y>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA412127070 rs1406194492 |
182 | L>F | No |
ClinGen gnomAD |
|
| TCGA novel | 183 | F>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA10309887 rs539026867 |
184 | E>A | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA412127048 rs1236306422 |
185 | D>G | No |
ClinGen gnomAD |
|
|
CA10309886 rs34437225 |
185 | D>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1201334468 COSM1190492 CA412127037 CA412127038 |
186 | D>E | lung [Cosmic] | No |
ClinGen cosmic curated TOPMed |
|
CA10309885 rs772491912 |
188 | S>T | No |
ClinGen ExAC gnomAD |
|
|
CA10309854 rs201310751 |
189 | V>I | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA412126997 rs1376716054 |
191 | Y>F | No |
ClinGen gnomAD |
|
|
rs1001543055 CA325493873 |
191 | Y>H | No |
ClinGen Ensembl |
|
|
rs1471079879 CA412126993 |
192 | F>L | No |
ClinGen gnomAD |
|
|
CA10309849 rs139503758 |
196 | R>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA325493850 rs957112735 |
196 | R>H | No |
ClinGen TOPMed gnomAD |
|
|
rs778712655 CA10309848 |
197 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
rs1175478459 CA412126957 |
197 | Y>H | No |
ClinGen gnomAD |
|
|
CA10309846 rs752685925 |
198 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 200 | G>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs367967613 CA10309845 |
201 | R>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA412126929 rs1216038340 |
201 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs555667885 CA325493802 |
203 | W>* | No |
ClinGen 1000Genomes gnomAD |
|
|
CA412126910 rs751770124 |
204 | P>A | No |
ClinGen ExAC gnomAD |
|
|
rs766850932 CA412126908 |
204 | P>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs766850932 CA10309842 |
204 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs751770124 CA10309843 |
204 | P>S | No |
ClinGen ExAC gnomAD |
|
|
CA412126909 rs751770124 |
204 | P>T | No |
ClinGen ExAC gnomAD |
|
|
rs763403823 CA10309841 |
205 | F>S | No |
ClinGen ExAC gnomAD |
|
|
rs1302523556 CA412126899 |
206 | L>V | No |
ClinGen gnomAD |
|
|
CA325493780 rs1037240982 |
207 | R>* | No |
ClinGen TOPMed gnomAD |
|
|
CA412126893 rs1162083285 |
207 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs770182355 CA10309839 |
208 | E>Q | No |
ClinGen ExAC gnomAD |
|
|
CA412126864 rs1347097280 |
211 | A>V | No |
ClinGen gnomAD |
|
|
CA412126854 rs374381598 |
213 | A>S | No |
ClinGen ESP ExAC gnomAD |
|
|
rs374381598 CA10309837 |
213 | A>T | No |
ClinGen ESP ExAC gnomAD |
|
|
rs117636118 CA10309833 |
216 | R>Q | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA10309834 rs779615440 |
216 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs745650779 CA10309832 |
217 | G>E | No |
ClinGen ExAC gnomAD |
|
|
CA412126817 rs1239877742 |
218 | Q>H | No |
ClinGen gnomAD |
|
|
CA412126805 rs1353645375 |
219 | G>V | No |
ClinGen gnomAD |
|
|
rs753759493 CA10309829 |
221 | G>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA10309830 rs757170869 |
221 | G>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA412126760 rs1364265859 |
224 | V>I | No |
ClinGen TOPMed gnomAD |
|
|
rs781144355 CA10309828 |
225 | N>S | No |
ClinGen ExAC gnomAD |
|
|
CA412126726 rs1399430055 |
227 | P>S | No |
ClinGen gnomAD |
|
|
CA412126712 rs1456329106 |
228 | W>* | No |
ClinGen gnomAD |
|
|
CA412126717 rs1304922730 |
228 | W>G | No |
ClinGen gnomAD |
|
|
rs751893888 CA10309826 |
229 | N>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs766692615 CA10309825 |
229 | N>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs763463142 CA10309824 |
230 | Q>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs953660706 CA325493674 |
230 | Q>H | No |
ClinGen Ensembl |
|
|
rs528925327 CA325493461 |
232 | G>V | No |
ClinGen TOPMed |
|
|
rs765537698 CA10309801 |
233 | M>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA412126165 rs1374453723 |
234 | G>R | No |
ClinGen gnomAD |
|
| TCGA novel | 235 | N>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs754370850 CA10309799 |
236 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA412126105 rs1407793227 |
238 | Y>F | No |
ClinGen gnomAD |
|
|
rs201305595 CA10309797 |
239 | V>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs201305595 CA10309796 |
239 | V>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA10309795 rs144393433 |
240 | A>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA412126066 rs1442074197 |
242 | F>L | No |
ClinGen gnomAD |
|
|
CA412126035 rs1178344518 |
244 | H>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA10309793 rs201929840 |
244 | H>Y | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
| TCGA novel | 247 | L>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs773985921 CA10309792 |
248 | P>A | No |
ClinGen ExAC gnomAD |
|
|
CA10309791 rs528268077 |
248 | P>L | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs773985921 CA412126005 |
248 | P>S | No |
ClinGen ExAC gnomAD |
|
|
CA10309789 rs773068953 |
250 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs143033632 CA10309788 |
250 | A>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA10309787 rs780307636 |
252 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1173179819 CA412125885 |
254 | D>N | No |
ClinGen gnomAD |
|
|
rs1423025145 CA412125862 |
255 | P>L | No |
ClinGen gnomAD |
|
|
CA10309757 rs11553698 |
256 | E>* | No |
ClinGen ExAC gnomAD |
|
|
CA10309756 rs765763378 |
256 | E>G | No |
ClinGen ExAC gnomAD |
|
|
CA10309755 rs762691781 |
258 | V>A | No |
ClinGen ExAC gnomAD |
|
|
CA412125818 rs1347515482 |
259 | L>P | No |
ClinGen TOPMed |
|
|
rs1407440534 CA412125820 |
259 | L>V | No |
ClinGen gnomAD |
|
|
rs199648733 COSM1194158 CA10309753 |
261 | S>L | lung [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ESP ExAC TOPMed gnomAD |
|
CA412125789 rs1196379510 |
262 | A>T | No |
ClinGen gnomAD |
|
|
rs776768158 CA10309751 |
263 | G>V | No |
ClinGen ExAC gnomAD |
|
|
rs759577793 CA10309749 |
265 | D>E | No |
ClinGen ExAC gnomAD |
|
|
rs775668209 CA325493106 |
266 | S>L | No |
ClinGen TOPMed |
|
|
CA412125729 rs774510785 |
267 | A>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA10309748 rs774510785 |
267 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA412125723 rs1424812783 |
268 | I>V | No |
ClinGen TOPMed gnomAD |
|
|
rs760485108 CA325493099 |
269 | G>A | No |
ClinGen TOPMed |
|
|
rs777967266 CA10309745 |
269 | G>R | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs1336786297 CA412125703 |
270 | D>N | No |
ClinGen gnomAD |
|
|
rs781691174 CA10309743 |
271 | P>A | No |
ClinGen ExAC gnomAD |
|
|
rs781691174 CA10309742 |
271 | P>T | No |
ClinGen ExAC gnomAD |
|
|
CA10309740 rs751964114 |
272 | E>D | No |
ClinGen ExAC gnomAD |
|
|
COSM1035380 CA412125634 rs1450464439 |
273 | G>E | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
rs568084821 CA10309727 |
274 | Q>K | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1156744929 CA412125610 |
275 | M>I | No |
ClinGen gnomAD |
|
|
rs748326060 CA10309726 |
275 | M>T | No |
ClinGen ExAC gnomAD |
|
|
COSM1682365 CA325492991 rs553257236 |
278 | T>M | large_intestine [Cosmic] | No |
ClinGen cosmic curated 1000Genomes gnomAD |
|
CA325492972 rs567046837 |
280 | E>G | No |
ClinGen Ensembl |
|
|
CA325492969 rs373249592 |
281 | C>F | No |
ClinGen Ensembl |
|
|
CA412125526 rs377073755 |
282 | F>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA412125525 rs1236390633 |
283 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA412125513 rs1215834500 |
284 | H>L | No |
ClinGen gnomAD |
|
|
CA10309722 rs780424827 |
285 | L>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs917052122 CA325492945 |
287 | Q>* | No |
ClinGen TOPMed gnomAD |
|
|
CA412125485 rs1234974531 |
287 | Q>R | No |
ClinGen TOPMed |
|
|
CA412125477 rs1353527019 |
288 | L>V | No |
ClinGen gnomAD |
|
|
CA412125471 rs1479895671 |
289 | L>M | No |
ClinGen TOPMed |
|
|
CA325492941 rs770487337 |
290 | Q>* | No |
ClinGen gnomAD |
|
|
CA325492939 rs867840687 |
290 | Q>R | No |
ClinGen Ensembl |
|
|
CA10309720 rs373887940 |
292 | L>P | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA325492928 rs866124770 |
293 | A>V | No |
ClinGen Ensembl |
|
|
rs202169873 COSM3424266 CA10309718 |
294 | G>S | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
rs1296336252 CA412125409 |
295 | G>D | No |
ClinGen gnomAD |
|
|
CA325492919 rs932642694 |
295 | G>S | No |
ClinGen TOPMed gnomAD |
|
|
rs752737416 CA325492909 |
296 | R>L | No |
ClinGen ExAC gnomAD |
|
|
rs752737416 CA10309714 |
296 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
rs755856003 CA10309715 |
296 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA412125385 rs113918787 |
297 | V>A | No |
ClinGen gnomAD |
|
|
CA325492908 rs113918787 |
297 | V>D | No |
ClinGen gnomAD |
|
|
CA412125383 rs113918787 |
297 | V>G | No |
ClinGen gnomAD |
|
|
CA325492905 rs866894987 |
299 | A>V | No |
ClinGen Ensembl |
|
|
CA10309711 rs375798796 |
300 | V>A | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs375798796 CA412125343 |
300 | V>G | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA10309712 rs200544896 |
300 | V>M | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA412125338 rs1215162137 |
301 | L>P | No |
ClinGen gnomAD |
|
|
rs1266432392 CA412125313 |
302 | E>D | No |
ClinGen gnomAD |
|
|
CA10309710 rs765249993 |
302 | E>Q | No |
ClinGen ExAC gnomAD |
|
|
rs748720875 CA10309680 |
303 | G>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA10309681 rs770620569 |
303 | G>R | No |
ClinGen ExAC gnomAD |
|
|
CA412125168 rs770620569 |
303 | G>S | No |
ClinGen ExAC gnomAD |
|
|
CA10309678 rs138792486 |
304 | G>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA325492695 rs921239547 |
306 | H>Q | No |
ClinGen Ensembl |
|
|
rs780977534 CA10309676 |
309 | S>L | No |
ClinGen ExAC gnomAD |
|
|
rs373225487 CA10309674 |
311 | A>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1601625617 CA412124968 |
313 | S>A | No |
ClinGen Ensembl |
|
|
rs757377111 CA10309672 |
315 | C>G | No |
ClinGen ExAC gnomAD |
|
|
CA412124882 rs1284882304 |
316 | M>I | No |
ClinGen TOPMed |
|
|
rs1242111707 CA412124915 |
316 | M>L | No |
ClinGen TOPMed gnomAD |
|
|
CA412124911 rs1242111707 |
316 | M>V | No |
ClinGen TOPMed gnomAD |
|
|
CA10309671 rs753834561 |
318 | V>I | No |
ClinGen ExAC gnomAD |
|
|
rs369223287 CA10309670 |
320 | T>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA412124743 rs1300497917 |
323 | G>D | No |
ClinGen TOPMed gnomAD |
|
|
CA10309668 rs779620715 |
324 | D>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA325492652 rs988324216 |
325 | P>A | No |
ClinGen Ensembl |
|
|
CA10309667 rs768057797 |
325 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs903068411 CA325492614 |
328 | P>S | No |
ClinGen TOPMed gnomAD |
|
|
CA412124643 rs903068411 |
328 | P>T | No |
ClinGen TOPMed gnomAD |
|
|
CA10309663 rs369323956 |
329 | L>P | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs369323956 CA10309664 |
329 | L>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1031427692 CA325492578 |
331 | G>E | No |
ClinGen TOPMed |
|
|
CA10309661 rs772619629 |
332 | P>R | No |
ClinGen ExAC gnomAD |
|
|
CA325492573 rs878902135 |
333 | M>T | No |
ClinGen Ensembl |
|
|
CA10309660 rs141840429 |
333 | M>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA412124551 rs1156239816 |
334 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
CA10309659 rs184151274 |
334 | A>V | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA10309654 rs148078988 |
336 | C>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA10309655 rs148078988 |
336 | C>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA10309653 rs758302637 |
338 | S>N | No |
ClinGen ExAC gnomAD |
|
|
CA10309625 rs750951494 |
339 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA10309624 rs765754391 |
340 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA10309622 rs776150306 |
343 | I>M | No |
ClinGen ExAC gnomAD |
|
|
rs763550305 CA10309621 |
344 | Q>R | No |
ClinGen ExAC gnomAD |
|
|
rs760336831 CA10309620 |
346 | A>T | No |
ClinGen ExAC gnomAD |
|
|
CA10309619 rs775058529 |
347 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs771817625 CA10309618 |
347 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs771817625 CA412124170 |
347 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA412124192 rs775058529 |
347 | R>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA10309617 rs745649891 |
348 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1333203256 CA412124125 |
349 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA412124070 rs866541358 |
351 | A>D | No |
ClinGen gnomAD |
|
|
CA10309615 rs774191628 |
351 | A>T | No |
ClinGen ExAC gnomAD |
|
|
CA325492322 rs866541358 |
351 | A>V | No |
ClinGen gnomAD |
|
|
COSM3379395 CA10309613 rs749187968 |
352 | P>L | pancreas [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA10309611 rs755040714 |
353 | H>Q | No |
ClinGen ExAC gnomAD |
|
|
CA325492320 rs1039988761 |
353 | H>R | No |
ClinGen Ensembl |
|
|
CA10309610 rs780311015 |
354 | W>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs780311015 CA10309609 |
354 | W>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA412123378 rs1478937189 |
354 | W>R | No |
ClinGen gnomAD |
|
|
rs758739986 CA412123322 |
356 | S>N | No |
ClinGen ExAC gnomAD |
|
|
CA412123314 rs1170668818 |
356 | S>R | No |
ClinGen TOPMed |
|
|
CA10309608 rs758739986 |
356 | S>T | No |
ClinGen ExAC gnomAD |
|
|
rs750770304 CA10309607 |
358 | Q>E | No |
ClinGen ExAC gnomAD |
|
|
rs1374484636 CA412123248 |
360 | Q>P | No |
ClinGen TOPMed |
|
| TCGA novel | 360 | Q>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA412123157 rs1362235768 |
361 | D>E | No |
ClinGen gnomAD |
|
|
CA412123154 rs773332826 |
362 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA10309577 rs773332826 |
362 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs769826411 CA10309576 |
363 | T>A | No |
ClinGen ExAC gnomAD |
|
|
rs761615631 CA10309575 |
363 | T>I | No |
ClinGen ExAC gnomAD |
|
|
CA412123120 rs541010302 |
364 | A>P | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA10309573 rs541010302 |
364 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA gnomAD |
| TCGA novel | 364 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA10309572 rs374905738 |
366 | P>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs749618183 CA10309569 |
367 | M>I | No |
ClinGen ExAC gnomAD |
|
|
rs771345093 CA412123073 |
367 | M>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs771345093 CA10309570 |
367 | M>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs778069867 CA10309568 |
368 | S>N | No |
ClinGen ExAC |
|
|
CA10309566 rs1345880867 |
370 | S>G | No |
ClinGen TOPMed |
|
|
rs1345880867 CA10309565 |
370 | S>R | No |
ClinGen TOPMed |
|
|
CA10309564 rs756632012 |
370 | S>T | No |
ClinGen ExAC gnomAD |
|
|
rs1290937002 CA412122990 |
372 | H>Y | No |
ClinGen gnomAD |
|
|
rs202077316 CA10309562 |
374 | P>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1281244726 CA412122917 |
375 | E>D | No |
ClinGen TOPMed |
|
|
rs780756630 CA10309561 |
376 | G>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1292689981 CA412122870 |
378 | P>L | No |
ClinGen gnomAD |
|
|
rs1400563463 CA412122868 |
379 | P>S | No |
ClinGen gnomAD |
|
|
CA325492115 rs751281854 |
380 | P>H | No |
ClinGen ExAC gnomAD |
|
|
CA10309559 rs751281854 |
380 | P>L | No |
ClinGen ExAC gnomAD |
|
|
CA10309560 rs147013823 |
380 | P>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs758310136 CA10309557 |
383 | P>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs765075902 CA10309555 |
384 | G>V | No |
ClinGen ExAC gnomAD |
|
|
CA412122785 rs1416538841 |
385 | G>D | No |
ClinGen gnomAD |
|
|
CA412122781 rs1193692437 |
386 | P>T | No |
ClinGen gnomAD |
|
|
CA412122770 rs1478450590 |
387 | V>M | No |
ClinGen TOPMed gnomAD |
|
|
CA325492060 rs925361721 |
389 | K>M | No |
ClinGen Ensembl |
|
|
CA10309552 rs376516708 |
389 | K>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA412122722 rs1601624388 |
390 | A>T | No |
ClinGen Ensembl |
|
|
rs560148776 CA325492037 |
392 | A>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs560148776 CA10309551 |
392 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs749458801 CA10309548 |
393 | S>T | No |
ClinGen ExAC gnomAD |
|
|
rs915740664 CA325492006 |
394 | A>V | No |
ClinGen TOPMed |
|
|
CA412122667 rs147831258 |
395 | P>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA10309545 rs147831258 |
395 | P>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs138377809 CA10309546 |
395 | P>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs779673425 CA10309541 |
400 | D>A | No |
ClinGen ExAC gnomAD |
|
|
rs758146735 CA10309540 |
401 | Q>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA10309538 rs145947789 |
402 | P>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA412122611 rs145947789 |
402 | P>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA10309539 rs145947789 |
402 | P>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA10309537 rs757002914 |
403 | C>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1168963513 CA412122557 |
407 | A>E | No |
ClinGen TOPMed gnomAD |
|
|
rs760617656 CA10309534 |
407 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs1168963513 CA412122558 |
407 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
rs774435168 CA10309533 |
408 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs774435168 CA325491943 |
408 | P>T | No |
ClinGen ExAC gnomAD |
|
|
CA10309532 rs766384118 |
409 | S>C | No |
ClinGen ExAC gnomAD |
|
|
rs149070120 CA10309531 |
411 | R>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA412122524 rs144952453 |
411 | R>H | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA10309530 rs144952453 |
411 | R>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA325491924 rs144952453 |
411 | R>P | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs748436922 CA10309528 |
413 | A>T | No |
ClinGen ExAC gnomAD |
|
|
CA10309527 rs777233310 |
415 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs112311672 CA10309525 |
418 | T>M | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA325491891 rs200930805 |
419 | P>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA10309522 rs200930805 |
419 | P>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs534989039 CA10309523 |
419 | P>T | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs891354162 CA325491875 |
420 | D>G | No |
ClinGen gnomAD |
|
| TCGA novel | 420 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA412122434 rs891354162 |
420 | D>V | No |
ClinGen gnomAD |
|
|
CA10309518 rs777573263 |
421 | I>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA10309519 rs35491456 |
421 | I>S | No |
ClinGen ExAC gnomAD |
|
|
CA10309520 rs373234995 |
421 | I>V | No |
ClinGen ESP ExAC gnomAD |
|
|
rs756014040 CA10309517 |
422 | T>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs759760054 CA10309515 |
423 | L>W | No |
ClinGen ExAC gnomAD |
|
|
rs1176054988 CA412122395 |
424 | V>F | No |
ClinGen gnomAD |
|
| TCGA novel | 425 | L>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA412122373 rs1374618018 |
426 | P>S | No |
ClinGen TOPMed |
|
|
rs750690429 CA325491844 |
427 | P>A | No |
ClinGen ExAC gnomAD |
|
|
rs765344720 CA10309512 |
427 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs750690429 CA10309513 |
427 | P>S | No |
ClinGen ExAC gnomAD |
|
|
VAR_049356 rs34402301 CA10309508 |
429 | V>I | No |
ClinGen UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA10309506 rs761270255 |
430 | I>M | No |
ClinGen ExAC gnomAD |
|
|
rs548780105 CA10309507 |
430 | I>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA412122323 rs1205689485 |
431 | Q>* | No |
ClinGen TOPMed |
|
|
rs1483599784 CA412122307 |
432 | Q>L | No |
ClinGen TOPMed gnomAD |
|
|
rs1483599784 CA412122303 |
432 | Q>R | No |
ClinGen TOPMed gnomAD |
|
|
rs761795614 CA325491806 |
434 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
CA10309505 rs139748706 COSM1308285 |
434 | A>V | Variant assessed as Somatic; 0.0 impact. urinary_tract [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA412122260 rs1241904586 |
436 | A>T | No |
ClinGen gnomAD |
|
|
rs778671841 CA10309502 |
438 | R>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA412122225 rs1315442800 |
439 | E>G | No |
ClinGen TOPMed gnomAD |
|
|
CA10309501 rs770509192 |
439 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA412122217 rs1433331267 |
440 | E>Q | No |
ClinGen gnomAD |
|
| TCGA novel | 441 | T>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA325491791 rs922820105 |
442 | E>K | No |
ClinGen TOPMed |
|
|
rs777432792 CA10309499 |
443 | A>T | No |
ClinGen ExAC gnomAD |
|
|
CA325491660 rs1001485241 |
446 | R>S | No |
ClinGen TOPMed |
|
|
rs1444588184 CA412122067 |
449 | E>K | No |
ClinGen gnomAD |
|
|
rs1444588184 CA412122066 |
449 | E>Q | No |
ClinGen gnomAD |
|
|
CA412122024 rs368996529 |
453 | R>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA412122019 rs762501392 |
453 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA10309462 rs762501392 |
453 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA10309463 rs368996529 COSM3939687 |
453 | R>W | oesophagus [Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD |
|
CA412122005 rs1274412312 |
455 | E>K | No |
ClinGen gnomAD |
|
|
CA10309461 rs772777381 |
456 | A>S | No |
ClinGen ExAC gnomAD |
|
|
rs1270097775 CA412121951 |
460 | L>F | No |
ClinGen TOPMed gnomAD |
|
|
rs747748937 CA10309459 |
460 | L>P | No |
ClinGen ExAC gnomAD |
|
|
CA412121947 rs747748937 |
460 | L>R | No |
ClinGen ExAC gnomAD |
|
|
CA412121941 rs1373632136 |
461 | G>A | No |
ClinGen TOPMed gnomAD |
|
|
CA412121934 rs1301609552 |
462 | K>E | No |
ClinGen gnomAD |
|
|
CA10309458 rs776424326 |
462 | K>N | No |
ClinGen ExAC gnomAD |
|
|
rs768373796 CA10309457 |
467 | L>* | No |
ClinGen ExAC gnomAD |
|
|
CA325491648 rs1043692742 |
468 | D>N | No |
ClinGen Ensembl |
|
|
CA412121878 rs1395733341 |
470 | M>T | No |
ClinGen gnomAD |
|
|
rs1408169931 CA412121881 |
470 | M>V | No |
ClinGen gnomAD |
|
|
CA412121862 rs1341555974 |
472 | D>E | No |
ClinGen gnomAD |
|
|
CA412121863 rs1173067008 |
472 | D>V | No |
ClinGen TOPMed gnomAD |
|
|
CA412121866 rs1477007115 |
472 | D>Y | No |
ClinGen TOPMed |
|
|
CA10309454 rs757333205 |
474 | Q>K | No |
ClinGen ExAC gnomAD |
|
|
rs1476731453 CA412121620 |
475 | V>M | No |
ClinGen TOPMed |
|
|
CA10309425 rs755336865 |
476 | N>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA10309424 rs751983554 |
477 | S>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs751983554 CA412121607 |
477 | S>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA10309423 rs780232551 |
479 | I>T | No |
ClinGen ExAC gnomAD |
|
|
COSM3363706 CA325490963 rs868031365 |
480 | A>V | kidney [Cosmic] | No |
ClinGen cosmic curated Ensembl |
|
CA412121573 rs1156530306 |
482 | T>I | No |
ClinGen TOPMed |
|
|
CA10309420 rs750863899 |
482 | T>P | No |
ClinGen ExAC gnomAD |
|
|
CA10309417 rs146379292 |
483 | P>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA10309418 rs146379292 |
483 | P>R | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs760207705 CA10309415 |
485 | S>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA412121556 rs1244126346 |
486 | A>T | No |
ClinGen gnomAD |
|
|
rs775382221 CA10309414 |
486 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs771709435 CA10309413 |
487 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs1210758647 CA412121548 COSM479111 |
487 | A>V | kidney Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated Ensembl NCI-TCGA |
|
rs201304779 CA10309411 |
488 | A>T | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1215021213 CA412121539 |
489 | A>D | No |
ClinGen TOPMed gnomAD |
|
|
rs1292671663 CA412121541 |
489 | A>P | No |
ClinGen gnomAD |
|
|
rs1377834005 CA412121531 |
490 | T>I | No |
ClinGen TOPMed |
|
|
rs1242548160 CA412121526 |
491 | L>R | No |
ClinGen TOPMed |
|
|
rs748206237 CA10309408 |
492 | D>A | No |
ClinGen ExAC gnomAD |
|
|
rs748206237 CA412121521 |
492 | D>V | No |
ClinGen ExAC gnomAD |
|
|
CA412121503 rs1394813328 |
495 | V>A | No |
ClinGen gnomAD |
|
|
CA325490875 rs768944994 |
496 | R>P | No |
ClinGen ExAC gnomAD |
|
|
rs768944994 CA10309406 |
496 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
rs61748567 CA10309407 |
496 | R>W | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1416518589 CA412121498 |
497 | R>G | No |
ClinGen gnomAD |
|
|
CA412121492 rs1164836688 |
497 | R>S | No |
ClinGen gnomAD |
|
| TCGA novel | 498 | G>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA412121482 rs1429564787 |
499 | L>P | No |
ClinGen gnomAD |
|
|
CA10309405 rs747140958 |
500 | S>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs747140958 CA412121477 |
500 | S>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA325490869 rs372054124 |
501 | H>Q | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA325490841 rs568653229 |
502 | G>E | No |
ClinGen Ensembl |
|
|
CA10309402 rs549871177 |
502 | G>R | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA gnomAD |
|
rs545428966 CA412121463 |
503 | A>P | No |
ClinGen ExAC gnomAD |
|
|
rs545428966 CA412121464 |
503 | A>S | No |
ClinGen ExAC gnomAD |
|
|
CA10309401 rs545428966 |
503 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs200644746 CA10309400 |
503 | A>V | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1205163162 CA412121454 |
504 | Q>H | No |
ClinGen gnomAD |
|
|
CA10309397 rs760392704 |
505 | R>M | No |
ClinGen ExAC gnomAD |
|
|
CA10309398 rs760392704 |
505 | R>T | No |
ClinGen ExAC gnomAD |
|
|
rs772315508 CA10309367 |
507 | L>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs772315508 CA10309368 |
507 | L>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA412121348 rs1208510828 |
509 | V>A | No |
ClinGen gnomAD |
|
|
CA10309365 rs201412860 |
509 | V>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA10309364 rs201412860 COSM1035378 |
509 | V>M | endometrium Variant assessed as Somatic; 9.246e-05 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA10309363 rs749848153 |
510 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1314631349 CA412121310 |
512 | G>E | No |
ClinGen gnomAD |
|
|
rs755687663 CA10309361 |
512 | G>R | No |
ClinGen ExAC gnomAD |
|
|
rs747641338 CA10309360 |
514 | L>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA10309356 rs761119286 |
516 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA10309357 rs544861577 |
516 | R>W | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA412121244 rs1174485895 |
517 | P>L | No |
ClinGen TOPMed |
|
|
CA412121225 rs1569133617 |
519 | D>G | No |
ClinGen Ensembl |
|
|
CA325490562 rs1003559464 |
519 | D>H | No |
ClinGen TOPMed gnomAD |
|
|
CA10309354 rs565204645 |
521 | A>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA325490557 rs755232800 |
521 | A>V | No |
ClinGen Ensembl |
|
|
CA10309353 rs765056280 |
522 | H>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA10309351 rs753997159 COSM3964428 |
524 | G>R | lung [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
rs753997159 CA325490533 |
524 | G>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA10309320 rs779671800 |
525 | R>K | No |
ClinGen ExAC gnomAD |
|
|
CA412121002 rs1198069569 |
527 | L>P | No |
ClinGen gnomAD |
|
|
rs771647737 CA10309319 |
528 | W>C | No |
ClinGen ExAC gnomAD |
|
|
CA325490239 rs957980473 |
530 | N>S | No |
ClinGen Ensembl |
|
|
CA412120927 rs1274311216 |
532 | R>K | No |
ClinGen gnomAD |
|
|
CA325490238 rs144296501 |
532 | R>S | No |
ClinGen ESP TOPMed gnomAD |
|
|
CA10309317 rs778579777 |
533 | G>A | No |
ClinGen ExAC gnomAD |
|
|
rs745469522 CA10309318 |
533 | G>C | No |
ClinGen ExAC gnomAD |
|
| rs1435922527 | 534 | K>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs753782136 CA325490221 |
535 | E>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA10309313 rs149579149 |
535 | E>D | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs753782136 CA10309315 |
535 | E>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs757074256 CA10309316 |
535 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA10309312 rs138168321 |
536 | A>T | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs766386076 CA10309311 |
536 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA412120867 rs1601618681 |
537 | A>P | No |
ClinGen Ensembl |
|
|
rs758552349 CA10309310 |
537 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA412120846 rs1171622610 |
539 | L>P | No |
ClinGen gnomAD |
|
| TCGA novel | 540 | S>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1470256650 CA412120842 |
540 | S>T | No |
ClinGen TOPMed gnomAD |
|
|
COSM726740 CA412120806 rs1184633073 |
542 | F>L | lung [Cosmic] | No |
ClinGen cosmic curated TOPMed gnomAD |
|
CA10309308 rs76578729 |
544 | V>I | No |
ClinGen 1000Genomes ESP ExAC TOPMed |
|
|
CA325490131 rs76578729 |
544 | V>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed |
|
|
rs777318498 COSM1308284 CA412120769 |
545 | S>C | Variant assessed as Somatic; 0.0 impact. urinary_tract [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA10309306 rs777318498 |
545 | S>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA412120748 rs1350489112 |
546 | T>M | No |
ClinGen gnomAD |
|
|
CA412120743 rs1218802057 |
547 | P>L | No |
ClinGen gnomAD |
|
|
rs1279303214 CA412120725 |
549 | P>L | No |
ClinGen TOPMed |
|
|
rs1281304115 CA412120712 |
550 | V>A | No |
ClinGen gnomAD |
|
|
CA412120718 rs61748566 |
550 | V>L | No |
ClinGen Ensembl |
|
|
CA325490081 rs61748566 |
550 | V>M | No |
ClinGen Ensembl |
|
|
CA10309283 rs766999237 |
551 | M>I | No |
ClinGen ExAC gnomAD |
|
|
rs759051560 CA10309282 |
552 | T>I | No |
ClinGen ExAC gnomAD |
|
|
rs138919111 CA10309281 COSM1327173 |
553 | G>S | ovary [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ESP ExAC TOPMed gnomAD |
|
CA412119586 rs1273824748 |
558 | C>S | No |
ClinGen gnomAD |
|
|
CA412119588 rs1273824748 |
558 | C>Y | No |
ClinGen gnomAD |
|
|
CA10309278 rs748875734 |
561 | G>A | No |
ClinGen ExAC gnomAD |
|
|
CA412119512 rs769565193 |
562 | L>F | No |
ClinGen ExAC gnomAD |
|
|
rs1601617733 CA412119520 |
562 | L>W | No |
ClinGen Ensembl |
|
|
CA10309275 rs748152015 |
563 | V>M | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 565 | P>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs889346725 CA325487886 |
565 | P>L | No |
ClinGen TOPMed |
|
|
rs373891992 CA325487858 |
566 | L>P | No |
ClinGen ESP TOPMed |
|
|
CA412119466 rs1238345855 |
567 | A>T | No |
ClinGen TOPMed |
|
|
rs1164675491 CA412119322 |
576 | L>V | No |
ClinGen gnomAD |
|
|
CA10309269 rs754052787 |
578 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA10309268 rs778337295 |
580 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA325487839 rs972615726 |
581 | P>S | No |
ClinGen TOPMed |
|
|
CA412119266 rs972615726 |
581 | P>T | No |
ClinGen TOPMed |
|
|
rs866151461 CA325487830 |
582 | G>D | No |
ClinGen Ensembl |
|
|
CA10309266 rs753292399 |
583 | H>R | No |
ClinGen ExAC gnomAD |
|
|
rs756538758 CA10309267 |
583 | H>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA10309265 rs768096692 |
584 | G>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs11553697 CA412119190 |
586 | Q>P | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs11553697 CA10309264 |
586 | Q>R | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA10309263 rs751087965 |
587 | G>R | No |
ClinGen ExAC gnomAD |
|
|
CA10309261 rs762654201 |
588 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA325487773 rs953378675 |
589 | H>Y | No |
ClinGen TOPMed |
|
|
rs769618185 CA10309259 |
590 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA412119110 rs1371327403 |
592 | L>F | No |
ClinGen gnomAD |
|
|
CA325487753 rs527647798 |
593 | L>V | No |
ClinGen 1000Genomes gnomAD |
|
|
rs1384625674 CA412119085 |
594 | A>D | No |
ClinGen TOPMed gnomAD |
|
|
CA10309258 rs201027749 |
595 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA325487741 CA10309257 rs776239767 |
596 | M>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs533436968 CA325487743 |
596 | M>V | No |
ClinGen Ensembl |
|
|
CA412119045 rs1443488389 |
597 | L>I | No |
ClinGen gnomAD |
|
|
CA325487730 rs981097705 |
598 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA10309256 rs768669155 |
598 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1569132783 CA412119006 |
599 | G>V | No |
ClinGen Ensembl |
|
|
rs201720171 CA10309255 |
600 | L>M | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs779062288 CA10309254 |
601 | A>S | No |
ClinGen ExAC gnomAD |
|
|
rs779062288 CA325487723 |
601 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs917562532 CA325487705 |
601 | A>V | No |
ClinGen Ensembl |
|
|
rs771119405 CA10309253 |
602 | G>E | No |
ClinGen ExAC gnomAD |
|
|
CA10309252 rs749585143 |
604 | R>* | No |
ClinGen ExAC gnomAD |
|
|
rs1266692661 CA412118950 |
604 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs1601617466 CA412118906 |
608 | L>H | No |
ClinGen Ensembl |
|
|
CA412118897 rs1481550776 |
609 | L>P | No |
ClinGen gnomAD |
|
|
CA325487683 rs868531698 |
610 | E>D | No |
ClinGen Ensembl |
|
|
CA325487675 rs13054930 |
611 | E>Q | No |
ClinGen Ensembl |
|
|
CA10309222 rs75596977 |
612 | N>D | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs764014436 CA10309221 |
613 | S>C | No |
ClinGen ExAC gnomAD |
|
|
rs760352851 CA10309220 |
614 | T>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA412118710 rs929644724 |
615 | P>H | No |
ClinGen TOPMed gnomAD |
|
|
CA412118707 rs929644724 |
615 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
CA325487565 rs929644724 |
615 | P>R | No |
ClinGen TOPMed gnomAD |
|
|
rs867353705 CA325487557 |
618 | A>S | No |
ClinGen Ensembl |
|
|
CA412118639 rs1336167096 |
619 | G>V | No |
ClinGen gnomAD |
|
|
rs1243142511 CA412118595 |
622 | A>V | No |
ClinGen gnomAD |
|
|
rs972369098 CA325487529 |
623 | R>P | No |
ClinGen TOPMed gnomAD |
|
|
rs368982991 CA10309218 |
623 | R>W | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1279152723 CA412118585 |
624 | V>M | No |
ClinGen gnomAD |
|
|
CA412118546 rs1236007980 |
627 | G>E | No |
ClinGen TOPMed |
|
|
rs1363143654 CA412118544 |
628 | E>K | No |
ClinGen gnomAD |
|
|
CA10309216 rs759484850 |
630 | P>R | No |
ClinGen ExAC gnomAD |
|
|
rs773443019 CA10309215 |
632 | S>G | No |
ClinGen ExAC gnomAD |
|
|
CA10309214 rs533648626 |
634 | G>D | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA412118490 rs1392869256 |
634 | G>S | No |
ClinGen gnomAD |
|
|
CA412118475 rs748472433 |
635 | P>L | No |
ClinGen ExAC gnomAD |
|
|
CA10309213 rs748472433 |
635 | P>R | No |
ClinGen ExAC gnomAD |
|
|
CA10309212 rs776688053 |
638 | V>G | No |
ClinGen ExAC gnomAD |
|
|
CA412118445 rs1214533429 |
639 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
rs769114941 CA10309211 |
639 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA10309209 rs780356548 |
640 | S>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA10309208 rs758910065 |
641 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA10309207 rs746314631 |
643 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 644 | V>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs778452120 CA10309206 |
644 | V>I | No |
ClinGen ExAC gnomAD |
|
|
CA10309205 rs756714862 |
645 | Q>E | No |
ClinGen ExAC gnomAD |
|
|
rs753565928 CA10309204 |
646 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA412118320 rs1230926911 |
648 | M>R | No |
ClinGen TOPMed gnomAD |
|
|
CA412118306 rs1297127489 |
649 | Y>F | No |
ClinGen gnomAD |
|
|
rs1340353034 CA412118311 |
649 | Y>H | No |
ClinGen gnomAD |
|
|
CA412118303 rs755284115 |
650 | L>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs752548379 CA10309201 |
651 | R>G | No |
ClinGen ExAC gnomAD |
|
|
rs759607673 CA10309199 |
652 | G>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA325487423 rs765400334 |
654 | L>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs765400334 CA10309197 |
654 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA10309196 rs761778884 |
655 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs761778884 CA325487401 |
655 | E>Q | No |
ClinGen ExAC gnomAD |
|
|
CA10309195 rs776723855 |
657 | Q>R | No |
ClinGen ExAC gnomAD |
|
|
rs1244411874 CA412118160 |
659 | K>R | No |
ClinGen gnomAD |
|
|
rs1253125837 CA412118100 |
662 | Q>P | No |
ClinGen gnomAD |
|
|
CA10309170 rs527783582 |
663 | C>R | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1476145410 CA412118008 |
663 | C>S | No |
ClinGen TOPMed |
|
|
CA412117998 rs1357115847 |
664 | H>Y | No |
ClinGen gnomAD |
|
|
CA412117938 rs1162031377 |
668 | V>M | No |
ClinGen gnomAD |
|
|
rs749748676 CA10309168 |
669 | A>G | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 669 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
1 associated diseases with Q969S8
Without disease ID
1 regional properties for Q969S8
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | Histone deacetylase domain | 25 - 321 | IPR023801 |
Functions
| Description | ||
|---|---|---|
| EC Number | 3.5.1.48 | In linear amides |
| Subcellular Localization |
|
|
| PANTHER Family | ||
| PANTHER Subfamily | ||
| PANTHER Protein Class | ||
| PANTHER Pathway Category | No pathway information available | |
4 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
| histone deacetylase complex | A protein complex that possesses histone deacetylase activity. |
| nucleoplasm | That part of the nuclear content other than the chromosomes or the nucleolus. |
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
8 GO annotations of molecular function
| Name | Definition |
|---|---|
| acetylputrescine deacetylase activity | Catalysis of the reaction: N-acetylputrescine + H(2)O = acetate + putrescine. |
| acetylspermidine deacetylase activity | Catalysis of the reaction: N(8)-acetylspermidine + H(2)O = acetate + spermidine. |
| deacetylase activity | Catalysis of the hydrolysis of an acetyl group or groups from a substrate molecule. |
| enzyme binding | Binding to an enzyme, a protein with catalytic activity. |
| histone deacetylase activity | Catalysis of the reaction: histone N6-acetyl-L-lysine + H2O = histone L-lysine + acetate. This reaction represents the removal of an acetyl group from a histone, a class of proteins complexed to DNA in chromatin and chromosomes. |
| histone deacetylase binding | Binding to histone deacetylase. |
| protein lysine deacetylase activity | Catalysis of the reaction: H2O + N6-acetyl-L-lysyl- |
| zinc ion binding | Binding to a zinc ion (Zn). |
13 GO annotations of biological process
| Name | Definition |
|---|---|
| chromatin organization | The assembly or remodeling of chromatin composed of DNA complexed with histones, other associated proteins, and sometimes RNA. |
| DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. |
| histone deacetylation | The modification of histones by removal of acetyl groups. |
| homologous recombination | A DNA recombination process that results in the exchange of an equal amount of genetic material between highly homologous DNA molecules. |
| macroautophagy | The major inducible pathway for the general turnover of cytoplasmic constituents in eukaryotic cells, it is also responsible for the degradation of active cytoplasmic enzymes and organelles during nutrient starvation. Macroautophagy involves the formation of double-membrane-bounded autophagosomes which enclose the cytoplasmic constituent targeted for degradation in a membrane-bounded structure. Autophagosomes then fuse with a lysosome (or vacuole) releasing single-membrane-bounded autophagic bodies that are then degraded within the lysosome (or vacuole). Some types of macroautophagy, e.g. pexophagy, mitophagy, involve selective targeting of the targets to be degraded. |
| negative regulation of DNA-templated transcription | Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription. |
| negative regulation of transcription by RNA polymerase II | Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II. |
| peptidyl-lysine deacetylation | The removal of an acetyl group from an acetylated lysine residue in a peptide or protein. |
| polyamine deacetylation | The modification of acetylpolyamine by the removal of acetyl groups. |
| positive regulation of mismatch repair | Any process that activates or increases the frequency, rate or extent of mismatch repair. |
| protein deacetylation | The removal of an acetyl group from a protein amino acid. An acetyl group is CH3CO-, derived from acetic |
| regulation of DNA-templated transcription | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
| spermidine deacetylation | The modification of acetylspermadine by the removal of acetyl groups. |
1 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q8LRK8 | HDA18 | Histone deacetylase 18 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MGTALVYHED | MTATRLLWDD | PECEIERPER | LTAALDRLRQ | RGLEQRCLRL | SAREASEEEL |
| 70 | 80 | 90 | 100 | 110 | 120 |
| GLVHSPEYVS | LVRETQVLGK | EELQALSGQF | DAIYFHPSTF | HCARLAAGAG | LQLVDAVLTG |
| 130 | 140 | 150 | 160 | 170 | 180 |
| AVQNGLALVR | PPGHHGQRAA | ANGFCVFNNV | AIAAAHAKQK | HGLHRILVVD | WDVHHGQGIQ |
| 190 | 200 | 210 | 220 | 230 | 240 |
| YLFEDDPSVL | YFSWHRYEHG | RFWPFLRESD | ADAVGRGQGL | GFTVNLPWNQ | VGMGNADYVA |
| 250 | 260 | 270 | 280 | 290 | 300 |
| AFLHLLLPLA | FEFDPELVLV | SAGFDSAIGD | PEGQMQATPE | CFAHLTQLLQ | VLAGGRVCAV |
| 310 | 320 | 330 | 340 | 350 | 360 |
| LEGGYHLESL | AESVCMTVQT | LLGDPAPPLS | GPMAPCQSAL | ESIQSARAAQ | APHWKSLQQQ |
| 370 | 380 | 390 | 400 | 410 | 420 |
| DVTAVPMSPS | SHSPEGRPPP | LLPGGPVCKA | AASAPSSLLD | QPCLCPAPSV | RTAVALTTPD |
| 430 | 440 | 450 | 460 | 470 | 480 |
| ITLVLPPDVI | QQEASALREE | TEAWARPHES | LAREEALTAL | GKLLYLLDGM | LDGQVNSGIA |
| 490 | 500 | 510 | 520 | 530 | 540 |
| ATPASAAAAT | LDVAVRRGLS | HGAQRLLCVA | LGQLDRPPDL | AHDGRSLWLN | IRGKEAAALS |
| 550 | 560 | 570 | 580 | 590 | 600 |
| MFHVSTPLPV | MTGGFLSCIL | GLVLPLAYGF | QPDLVLVALG | PGHGLQGPHA | ALLAAMLRGL |
| 610 | 620 | 630 | 640 | 650 | 660 |
| AGGRVLALLE | ENSTPQLAGI | LARVLNGEAP | PSLGPSSVAS | PEDVQALMYL | RGQLEPQWKM |
| LQCHPHLVA |