Q84TV4

PR
Gene name
Os03g0818300 (LOC_Os03g60390, OJ1754_E06.2, OsJ_13123, OSJNBa0094J08.5)
Protein name
PHD finger protein ALFIN-LIKE 3
Names
Species
Oryza sativa subsp japonica (Rice)
KEGG Pathway
osa:4334579
EC number
Protein Class

Descriptions

The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.

Autoinhibitory domains (AIDs)

114-204 (Predicted disordered autoinhibitory region) PR

Target domain

Relief mechanism

Assay

cis-regPred

Accessory elements

No accessory elements

References

Autoinhibited structure

Activated structure

1 structures for Q84TV4

Entry ID Method Resolution Chain Position Source
AF-Q84TV4-F1 Predicted AlphaFoldDB

No variants for Q84TV4

Variant ID(s) Position Change Description Diseaes Association Provenance
No variants for Q84TV4

No associated diseases with Q84TV4

1 regional properties for Q84TV4

Type Name Position InterPro Accession
domain Olfactomedin-like domain 385 - 642 IPR003112

Functions

Description
EC Number
Subcellular Localization
  • Nucleus
PANTHER Family
PANTHER Subfamily
PANTHER Protein Class
PANTHER Pathway Category No pathway information available

1 GO annotations of cellular component

Name Definition
nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

4 GO annotations of molecular function

Name Definition
histone binding Binding to a histone, any of a group of water-soluble proteins found in association with the DNA of eukaryotic or archaeal chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in gene regulation and DNA replication. They may be chemically modified (methylated, acetlyated and others) to regulate gene transcription.
metal ion binding Binding to a metal ion.
transcription cis-regulatory region binding Binding to a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon.
transcription coregulator activity A transcription regulator activity that modulates the transcription of specific gene sets via binding to a DNA-bound DNA-binding transcription factor, either on its own or as part of a complex. Coregulators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second class remodels the conformation of chromatin in an ATP-dependent fashion. A third class modulates interactions of DNA-bound DNA-binding transcription factors with other transcription coregulators.

2 GO annotations of biological process

Name Definition
chromatin organization The assembly or remodeling of chromatin composed of DNA complexed with histones, other associated proteins, and sometimes RNA.
regulation of DNA-templated transcription Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.

1 homologous proteins in AiPD

UniProt AC Gene Name Protein Name Species Evidence Code
O81488 AL4 PHD finger protein ALFIN-LIKE 4 Arabidopsis thaliana (Mouse-ear cress) PR
10 20 30 40 50 60
MEMAPAAQVA SNPRTVEDIF KDYSARRGAL VRALTSDVDE FFGLCDPDKE NLCLYGLANG
70 80 90 100 110 120
SWEVALPAEE VPPELPEPAL GINFARDGMN RRDWLSLVAV HSDSWLVSVA FFFAARLNGN
130 140 150 160 170 180
ERKRLFNMIN DLPTVYEALV DRKHVRDRSG VDSSGKSKHS TKRTGEGQVK RSRVVAEEYE
190 200 210 220 230 240
DDDEEHNETF CGTCGGLYNA NEFWIGCDIC ERWFHGKCVR ITPAKAEHIK HYKCPDCSSS
SSKKTRL