Q84J39
PR
Gene name |
REM1 (At4g31610, F28M20.200) |
Protein name |
B3 domain-containing protein REM1 |
Names |
Protein REPRODUCTIVE MERISTEM 1, AtREM1 |
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT4G31610 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q84J39
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q84J39-F1 | Predicted | AlphaFoldDB |
50 variants for Q84J39
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| tmp_4_15317713_C_T | 5 | P>L | No | 1000Genomes | |
| tmp_4_15317715_C_T | 6 | H>Y | No | 1000Genomes | |
| ENSVATH06808347 | 9 | L>P | No | 1000Genomes | |
| ENSVATH06808348 | 13 | K>N | No | 1000Genomes | |
| ENSVATH06808350 | 38 | K>* | No | 1000Genomes | |
| ENSVATH06808351 | 42 | S>* | No | 1000Genomes | |
| tmp_4_15317920_T_C | 45 | V>A | No | 1000Genomes | |
| ENSVATH06808353 | 52 | G>D | No | 1000Genomes | |
| ENSVATH12337009 | 64 | C>G | No | 1000Genomes | |
| ENSVATH12337010 | 68 | F>C | No | 1000Genomes | |
| tmp_4_15318007_T_G | 74 | L>W | No | 1000Genomes | |
| ENSVATH12337011 | 75 | V>I | No | 1000Genomes | |
| ENSVATH00547061 | 88 | V>A | No | 1000Genomes | |
| tmp_4_15318078_C_T | 98 | R>C | No | 1000Genomes | |
| ENSVATH06808354 | 103 | S>G | No | 1000Genomes | |
| tmp_4_15318118_A_G | 111 | Y>C | No | 1000Genomes | |
| ENSVATH12337012 | 111 | Y>D | No | 1000Genomes | |
| ENSVATH14321229 | 116 | D>N | No | 1000Genomes | |
| tmp_4_15318151_A_G | 122 | Y>C | No | 1000Genomes | |
| tmp_4_15318175_A_T | 130 | D>V | No | 1000Genomes | |
| tmp_4_15318201_A_T | 139 | N>Y | No | 1000Genomes | |
| tmp_4_15318298_T_A | 143 | I>K | No | 1000Genomes | |
| ENSVATH06808358 | 157 | S>L | No | 1000Genomes | |
| ENSVATH06808359 | 160 | S>P | No | 1000Genomes | |
| tmp_4_15318357_A_G | 163 | I>V | No | 1000Genomes | |
| ENSVATH06808360 | 169 | R>C | No | 1000Genomes | |
| ENSVATH12337021 | 173 | L>H | No | 1000Genomes | |
| tmp_4_15318496_C_G | 179 | L>V | No | 1000Genomes | |
| ENSVATH14321230 | 239 | L>I | No | 1000Genomes | |
| ENSVATH06808368 | 260 | S>F | No | 1000Genomes | |
| tmp_4_15318743_G_A | 261 | G>D | No | 1000Genomes | |
| ENSVATH00547062 | 264 | R>G | No | 1000Genomes | |
| ENSVATH12337022 | 284 | P>Q | No | 1000Genomes | |
| tmp_4_15319059_C_T | 337 | L>F | No | 1000Genomes | |
| tmp_4_15319164_G_T | 372 | V>L | No | 1000Genomes | |
| ENSVATH02948206 | 387 | E>K | No | 1000Genomes | |
| ENSVATH00547064 | 406 | E>K | No | 1000Genomes | |
| tmp_4_15319375_G_C | 414 | V>L | No | 1000Genomes | |
| ENSVATH00547067 | 416 | K>R | No | 1000Genomes | |
| tmp_4_15319390_A_G | 419 | R>G | No | 1000Genomes | |
| tmp_4_15319397_G_A | 421 | G>E | No | 1000Genomes | |
| ENSVATH14321232 | 432 | E>D | No | 1000Genomes | |
| ENSVATH12337023 | 450 | Q>H | No | 1000Genomes | |
| tmp_4_15319486_C_G | 451 | R>G | No | 1000Genomes | |
| ENSVATH06808376 | 454 | P>S | No | 1000Genomes | |
| tmp_4_15319528_A_G | 465 | N>D | No | 1000Genomes | |
| ENSVATH00547068 | 471 | V>I | No | 1000Genomes | |
| tmp_4_15319552_A_T | 473 | S>C | No | 1000Genomes | |
| ENSVATH12337075 | 493 | A>T | No | 1000Genomes | |
| tmp_4_15319634_C_A | 500 | A>D | No | 1000Genomes |
No associated diseases with Q84J39
3 regional properties for Q84J39
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | B3 DNA binding domain | 5 - 92 | IPR003340-1 |
| domain | B3 DNA binding domain | 162 - 259 | IPR003340-2 |
| domain | B3 DNA binding domain | 284 - 386 | IPR003340-3 |
1 GO annotations of cellular component
| Name | Definition |
|---|---|
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
1 GO annotations of molecular function
| Name | Definition |
|---|---|
| DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
3 GO annotations of biological process
| Name | Definition |
|---|---|
| flower development | The process whose specific outcome is the progression of the flower over time, from its formation to the mature structure. The flower is the reproductive structure in a plant, and its development begins with the transition of the vegetative or inflorescence meristem into a floral meristem. |
| megagametogenesis | The process whose specific outcome is the progression of the embryo sac over time, from its formation as the megaspore to the mature structure. The process begins when three of the four haploid megaspores disintegrate, and the fourth undergoes mitosis giving rise to a binucleate syncytial embryo sac. The two haploid nuclei migrate to the opposite poles of the embryo sac and then undergo two rounds of mitosis generating four haploid nuclei at each pole. One nucleus from each set of four migrates to the center of the cell. Cellularization occurs, resulting in an eight-nucleate seven-celled structure. This structure contains two synergid cells and an egg cell at the micropylar end, and three antipodal cells at the other end. A binucleate endosperm mother cell is formed at the center. |
| pollen development | The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates. |
5 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q5N6V0 | Os01g0905400 | B3 domain-containing protein Os01g0905400 | Oryza sativa subsp japonica (Rice) | PR |
| Q7XS75 | Os04g0346900 | Putative B3 domain-containing protein Os04g0346900 | Oryza sativa subsp japonica (Rice) | PR |
| Q7XS74 | Os04g0347400 | Putative B3 domain-containing protein Os04g0347400 | Oryza sativa subsp japonica (Rice) | PR |
| Q9XIB4 | At1g49475 | B3 domain-containing protein At1g49475 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q8H2D1 | REM8 | B3 domain-containing protein REM8 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MADPPHFSLF | QQKFRTGDKP | FLTLDADFLM | NHTKVLLKSD | ASDKVWKVKL | DGGRLSEGWE |
| 70 | 80 | 90 | 100 | 110 | 120 |
| EFACDQKFRD | GDVLVFKHHG | DEVFHVAVVS | PSVSGDIRNA | SSSQVITEDT | YIDVDDVDDD |
| 130 | 140 | 150 | 160 | 170 | 180 |
| DYGQDDEDDD | DDDDEGEDNI | ENISEKTDKR | QEADSSSDHS | GFITARVTRY | SLLHDRLDLS |
| 190 | 200 | 210 | 220 | 230 | 240 |
| RNFTLLFGGH | QKTCEIDVVD | EQGRRWTMKL | AKNISSGVFY | IRLGWGNFCC | ANGLTQGDLC |
| 250 | 260 | 270 | 280 | 290 | 300 |
| KFKLFQNEER | PVLWLCPQES | GNGRKEKRTF | DEVSKGKEKK | TPSPFLIVKY | TPSRETTGQL |
| 310 | 320 | 330 | 340 | 350 | 360 |
| SLPVSFTRNN | SINKTGEVIL | LNQDGRKWSS | YLQITGLGRG | AGSEWFYLRR | GWREMCEANG |
| 370 | 380 | 390 | 400 | 410 | 420 |
| VGVNDSFKLE | LVWEGANPMF | KFCSKIENHE | YKGKGNQRTR | KKRACETAPQ | PRNVKKTPRL |
| 430 | 440 | 450 | 460 | 470 | 480 |
| GVEGPVYQVD | EERGHTQVSN | RTNTISGNLQ | RLLPPSCSVS | DQVANVKQGI | VDSLNTVRQC |
| 490 | 500 | 510 | |||
| RTELETSEQN | LQASLLAIDA | LGERIWGISK | ILSSNLV |