Q53HC0
Gene name |
CCDC92 |
Protein name |
Coiled-coil domain-containing protein 92 |
Names |
Limkain beta-2 |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:80212 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q53HC0
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q53HC0-F1 | Predicted | AlphaFoldDB |
299 variants for Q53HC0
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
CA6866718 rs764523315 |
3 | S>L | No |
ClinGen ExAC gnomAD |
|
|
CA6866717 rs763053604 |
5 | H>Y | No |
ClinGen ExAC gnomAD |
|
|
rs143890190 CA6866716 |
7 | S>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1408835440 CA387201006 |
8 | S>I | No |
ClinGen gnomAD |
|
|
CA387200995 rs1304371472 |
10 | D>N | No |
ClinGen TOPMed gnomAD |
|
|
rs1349187927 CA387200983 |
11 | E>G | No |
ClinGen gnomAD |
|
|
CA6866689 rs767605169 |
12 | G>D | No |
ExAC gnomAD ClinGen |
|
|
rs1335135950 CA387200953 |
14 | L>P | No |
TOPMed ClinGen |
|
|
rs1487102690 CA387200948 |
15 | D>G | No |
ClinGen gnomAD |
|
|
CA387200946 rs1487102690 |
15 | D>V | No |
ClinGen gnomAD |
|
|
CA387200943 rs1594458344 |
16 | V>I | No |
ClinGen Ensembl |
|
|
rs1208454220 CA387200925 |
18 | M>T | No |
gnomAD ClinGen |
|
|
CA387200928 rs1249192316 |
18 | M>V | No |
ClinGen gnomAD |
|
|
rs773969464 CA6866687 |
19 | A>P | No |
ExAC gnomAD ClinGen |
|
|
CA387200904 rs1265437054 |
21 | T>I | No |
ClinGen gnomAD |
|
|
rs1448273354 CA387200902 |
22 | N>D | No |
TOPMed ClinGen |
|
|
rs1311315743 CA387200883 |
24 | E>D | No |
ClinGen TOPMed gnomAD |
|
|
CA387200886 rs1223708727 |
24 | E>G | No |
gnomAD ClinGen |
|
|
rs768064944 CA6866686 |
25 | N>S | No |
ClinGen ExAC gnomAD |
|
|
CA387200869 rs1347874629 |
26 | Q>H | No |
ClinGen TOPMed |
|
|
rs963926058 CA245212556 |
27 | L>P | No |
ClinGen TOPMed gnomAD |
|
|
rs34599389 CA6866684 |
28 | H>Q | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen |
|
|
rs748768885 CA6866685 |
28 | H>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6866683 rs769441748 |
29 | S>N | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA387200851 rs541227181 |
29 | S>R | No |
1000Genomes ExAC gnomAD ClinGen |
|
|
CA6866681 rs150024637 |
30 | A>T | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA6866680 rs758959333 |
30 | A>V | No |
ExAC gnomAD ClinGen |
|
|
CA6866679 rs748663267 |
32 | K>N | No |
ExAC gnomAD ClinGen |
|
|
CA6866678 rs779406895 |
33 | N>D | No |
ExAC gnomAD ClinGen |
|
|
CA6866677 rs755044224 |
33 | N>K | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs967129822 CA245212553 |
34 | L>F | No |
ClinGen TOPMed |
|
|
CA387200813 rs1391272174 |
36 | F>V | No |
gnomAD ClinGen |
|
|
CA6866676 rs376515224 |
39 | R>Q | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1448241548 CA387200759 |
44 | T>A | No |
ClinGen gnomAD |
|
|
CA6866675 rs139365870 |
44 | T>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA6866671 rs200185333 |
46 | K>N | No |
1000Genomes ExAC TOPMed gnomAD ClinGen |
|
|
rs1253914589 CA387200748 |
46 | K>Q | No |
ClinGen gnomAD |
|
|
CA6866670 rs774161061 |
47 | G>W | No |
ExAC gnomAD ClinGen |
|
|
CA6866668 rs753848940 |
51 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA6866667 rs775046340 |
52 | I>M | No |
ClinGen ExAC gnomAD |
|
|
CA6866665 rs575564869 |
54 | R>Q | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs769500480 CA6866666 |
54 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA387200660 rs1463766084 |
59 | C>Y | No |
ClinGen gnomAD |
|
|
rs776204383 CA6866664 |
60 | T>K | No |
ClinGen ExAC gnomAD |
|
|
rs777622722 CA6866633 |
63 | T>I | No |
ExAC gnomAD ClinGen |
|
|
CA6866631 rs752682134 |
64 | Y>* | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 66 | L>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA387200285 rs1221676061 |
66 | L>V | No |
TOPMed ClinGen |
|
|
rs1262253994 CA387200267 |
68 | V>I | No |
ClinGen gnomAD |
|
|
rs1594456063 CA387200253 |
69 | K>R | No |
Ensembl ClinGen |
|
|
VAR_030301 rs11057401 CA6866629 |
70 | S>C | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen UniProt dbSNP |
|
|
rs1202205954 CA387200232 |
70 | S>N | No |
TOPMed gnomAD ClinGen |
|
|
rs11057401 CA387200236 |
70 | S>R | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen |
|
|
CA6866628 COSM936686 rs143142884 |
71 | S>L | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated 1000Genomes ESP ExAC NCI-TCGA gnomAD |
|
rs143142884 CA245212453 |
71 | S>W | No |
ClinGen 1000Genomes ESP ExAC gnomAD |
|
|
rs1408289439 CA387200204 |
72 | E>Q | No |
ClinGen gnomAD |
|
|
CA387200182 rs1417519108 |
73 | Q>E | No |
Ensembl ClinGen |
|
| TCGA novel | 74 | T>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA387200161 rs1324365422 |
75 | G>R | No |
gnomAD ClinGen |
|
|
CA387199334 rs1448864822 |
77 | G>E | No |
ClinGen gnomAD |
|
|
rs775978105 CA6866605 |
77 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6866604 rs765888240 |
78 | T>I | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 80 | K>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA387199296 rs1205347023 |
81 | S>T | No |
gnomAD ClinGen |
|
|
CA387199285 rs1391829354 |
82 | S>I | No |
ClinGen TOPMed |
|
|
CA387199279 rs1444275597 |
83 | E>K | No |
gnomAD ClinGen |
|
|
rs201517947 CA6866602 |
85 | K>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA6866600 rs771043483 |
87 | R>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs573154431 CA6866598 |
90 | E>D | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1594443453 CA387199183 |
92 | E>K | No |
ClinGen Ensembl |
|
|
rs200385849 CA6866597 |
93 | A>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs747976096 CA6866596 |
93 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs200883084 CA387199159 |
94 | Q>H | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs778675070 CA6866595 |
94 | Q>R | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs184378821 COSM170597 CA6866590 |
101 | E>K | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
1000Genomes ExAC gnomAD ClinGen cosmic curated NCI-TCGA |
|
rs184378821 CA245211331 |
101 | E>Q | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1473017807 CA387199067 |
103 | A>V | No |
ClinGen gnomAD |
|
| TCGA novel | 106 | L>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1440973682 CA387199038 |
106 | L>S | No |
gnomAD ClinGen |
|
|
CA6866588 rs756831339 |
109 | L>R | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA6866587 rs753183790 |
110 | E>Q | No |
ExAC gnomAD ClinGen |
|
|
CA245211326 rs370285111 |
111 | Q>* | No |
ClinGen ESP TOPMed |
|
|
CA6866585 rs202226542 |
114 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA6866584 rs777304210 |
114 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA6866581 rs773134124 |
115 | M>K | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs773134124 CA245211319 |
115 | M>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6866582 rs760855449 |
115 | M>V | No |
ExAC gnomAD ClinGen |
|
|
rs762009006 CA6866579 |
117 | T>A | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA245211315 rs865975725 |
117 | T>I | No |
ClinGen Ensembl |
|
|
CA387198913 rs1368579388 |
118 | V>A | No |
ClinGen TOPMed gnomAD |
|
|
rs1346393740 CA387198908 |
119 | L>P | No |
TOPMed ClinGen |
|
|
CA387198882 rs143608456 |
121 | N>K | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs768445428 CA6866577 |
121 | N>S | No |
ExAC gnomAD ClinGen |
|
|
CA387198872 rs1161304988 |
122 | T>I | No |
ClinGen gnomAD |
|
|
rs777805548 CA245211306 |
123 | I>T | No |
Ensembl ClinGen |
|
|
rs1189402811 CA387198860 |
124 | K>E | No |
ClinGen Ensembl |
|
|
CA387198850 rs1254245039 |
125 | E>K | No |
gnomAD ClinGen |
|
|
rs1182935825 CA387198835 |
126 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs780064664 CA6866575 |
127 | E>D | No |
ExAC TOPMed gnomAD ClinGen |
|
| TCGA novel | 129 | K>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs769598142 CA6866574 |
130 | Y>F | No |
ExAC gnomAD ClinGen |
|
| TCGA novel | 134 | L>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA387198734 rs1453659695 |
137 | K>R | No |
ClinGen Ensembl |
|
|
CA245211301 rs149289004 |
140 | K>R | No |
ESP TOPMed gnomAD ClinGen |
|
|
CA387198699 rs1487763202 |
142 | T>N | No |
TOPMed ClinGen |
|
|
rs1225223106 CA387198694 |
143 | L>Q | No |
TOPMed ClinGen |
|
|
CA6866571 rs757033113 |
144 | L>Q | No |
ExAC gnomAD ClinGen |
|
|
rs1269962386 CA387198687 |
145 | S>P | No |
TOPMed ClinGen |
|
|
rs777524677 CA6866569 |
147 | E>K | No |
ExAC gnomAD ClinGen |
|
|
rs528091347 CA6866568 |
149 | E>K | No |
1000Genomes ExAC gnomAD ClinGen |
|
|
CA387198649 rs1227456683 |
150 | Q>L | No |
ClinGen gnomAD |
|
|
rs766947844 CA6866567 |
151 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6866566 rs766947844 |
151 | R>Q | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs1191133385 CA387198645 COSM936684 |
151 | R>W | Variant assessed as Somatic; impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed |
|
CA387198643 rs1163408567 |
152 | A>T | No |
TOPMed ClinGen |
|
| TCGA novel | 153 | S>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA387198624 rs1348088854 |
154 | T>I | No |
ClinGen TOPMed |
|
|
CA387198620 rs1426398142 |
155 | I>N | No |
ClinGen TOPMed |
|
|
rs200893122 CA6866563 |
156 | A>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs761814821 CA6866562 |
157 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
rs1397908454 CA387198610 |
157 | Y>H | No |
TOPMed ClinGen |
|
| TCGA novel | 157 | Y>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA387198604 rs1458646471 |
158 | L>V | No |
ClinGen TOPMed gnomAD |
|
|
CA387198594 rs1414399813 |
159 | T>I | No |
TOPMed gnomAD ClinGen |
|
|
CA6866560 rs768819776 |
164 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA6866558 rs140945803 |
165 | A>S | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
CA6866557 rs140945803 |
165 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1566142150 CA387198556 |
166 | K>E | No |
ClinGen Ensembl |
|
|
rs781130374 CA6866555 |
168 | K>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1566142104 CA387198534 |
169 | L>F | No |
Ensembl ClinGen |
|
|
CA387198522 rs1488205334 |
170 | M>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
CA387198527 rs1212161770 |
170 | M>V | No |
ClinGen gnomAD |
|
|
rs770592291 CA6866553 |
171 | S>R | No |
ExAC gnomAD ClinGen |
|
|
rs758420754 CA245211282 |
172 | S>P | No |
Ensembl ClinGen |
|
|
CA387198501 rs746464773 |
173 | S>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA387198497 rs1180782439 |
174 | G>A | No |
ClinGen TOPMed |
|
|
CA6866551 rs777614867 |
174 | G>R | No |
ClinGen ExAC gnomAD |
|
|
rs1302684720 CA387198478 |
177 | D>G | No |
gnomAD ClinGen |
|
|
rs898908164 CA387198472 |
178 | A>D | No |
ClinGen Ensembl |
|
|
rs898908164 CA245211276 |
178 | A>G | No |
ClinGen Ensembl |
|
|
rs758089612 CA6866550 |
178 | A>T | No |
ExAC gnomAD ClinGen |
|
|
CA387198457 rs1437247239 |
180 | P>L | No |
TOPMed gnomAD ClinGen |
|
|
CA387198462 rs1273028017 |
180 | P>T | No |
gnomAD ClinGen |
|
|
rs1164210220 CA387198435 COSM692440 |
184 | P>T | lung [Cosmic] | No |
TOPMed ClinGen cosmic curated |
|
CA387198429 rs375777447 |
185 | V>L | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
CA6866548 rs375777447 |
185 | V>M | Variant assessed as Somatic; 0.0004834 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA387198402 rs1160958150 |
189 | Y>C | No |
ClinGen TOPMed |
|
|
rs756443057 CA6866547 |
190 | K>R | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs373710834 CA6866546 |
192 | A>V | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen |
|
|
CA245211269 rs369556523 |
193 | P>L | No |
ClinGen ESP gnomAD |
|
|
rs137881473 CA6866544 |
193 | P>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs137881473 CA6866543 |
193 | P>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs764341645 CA387198374 |
194 | P>H | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA6866542 rs764341645 |
194 | P>R | No |
ExAC TOPMed gnomAD ClinGen |
|
| rs771590551 | 195 | K>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA387198358 CA245211263 rs908706507 |
196 | D>E | No |
TOPMed gnomAD ClinGen |
|
|
rs1404252578 CA387198339 |
199 | P>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
gnomAD ClinGen NCI-TCGA |
|
CA387198335 rs1311080176 |
200 | E>G | No |
gnomAD ClinGen |
|
|
rs775416812 CA6866538 |
200 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA |
|
rs150284078 CA6866537 |
201 | T>M | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA387198320 rs1470526730 |
203 | R>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs200976444 CA6866535 |
203 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA6866534 rs770966187 |
204 | R>C | No |
ClinGen ExAC gnomAD |
|
|
rs746554659 CA6866533 |
204 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6866532 rs772842988 |
205 | R>C | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA6866530 rs747767968 |
205 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6866531 rs747767968 |
205 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs778561559 CA6866529 |
206 | M>V | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA6866528 rs756466263 |
207 | K>R | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA387198292 rs1432102598 |
208 | K>E | No |
gnomAD ClinGen |
|
|
CA387198275 rs1188282936 |
210 | L>F | No |
gnomAD ClinGen |
|
|
rs781701790 CA6866526 |
210 | L>P | No |
ExAC gnomAD ClinGen |
|
|
rs559698435 CA245211245 |
215 | H>Q | No |
ClinGen 1000Genomes |
|
|
rs765763703 CA245211243 |
216 | P>L | No |
TOPMed gnomAD ClinGen |
|
|
CA387198238 rs1277499691 |
216 | P>S | No |
ClinGen gnomAD |
|
|
rs752871572 CA6866521 |
217 | E>K | No |
ExAC gnomAD ClinGen |
|
| TCGA novel | 220 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs765446883 CA6866520 |
221 | V>F | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs201150051 CA6866519 |
223 | R>G | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen |
|
|
rs766488444 CA6866518 |
224 | F>L | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA245211238 rs267603366 |
224 | F>S | No |
ClinGen Ensembl |
|
|
CA6866516 rs760674981 CA387198178 |
225 | G>R | No |
ClinGen ExAC gnomAD |
|
|
CA387198175 rs1374594704 |
225 | G>V | No |
TOPMed ClinGen |
|
|
rs1260919791 CA387198174 |
226 | A>T | No |
TOPMed ClinGen |
|
|
rs1311068677 CA387198169 |
226 | A>V | No |
ClinGen gnomAD |
|
|
CA6866515 rs773223947 |
228 | S>G | No |
ExAC gnomAD ClinGen |
|
|
rs1371659487 CA387198135 |
231 | L>P | No |
ClinGen gnomAD |
|
| TCGA novel | 233 | L>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA6866513 rs200277506 |
234 | R>Q | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
COSM936683 CA387198119 rs1460952697 |
234 | R>W | Variant assessed as Somatic; 4.657e-05 impact. endometrium [NCI-TCGA, Cosmic] | No |
gnomAD ClinGen cosmic curated NCI-TCGA |
|
rs768333786 CA245211226 |
239 | A>S | No |
ExAC gnomAD ClinGen |
|
|
rs768333786 CA6866511 |
239 | A>T | No |
ExAC gnomAD ClinGen |
|
|
CA387198076 rs1190262527 CA387198077 |
240 | M>I | No |
ClinGen TOPMed |
|
|
rs781534968 CA6866509 |
242 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA387198059 rs1194005692 |
243 | P>S | No |
ClinGen gnomAD |
|
|
rs747530799 CA6866507 |
244 | T>P | No |
ExAC gnomAD ClinGen |
|
| TCGA novel | 247 | L>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1399723112 CA387198027 |
248 | L>R | No |
ClinGen TOPMed |
|
|
rs1227836627 CA387198026 |
249 | A>T | No |
gnomAD ClinGen |
|
|
CA387198002 rs1408274085 |
252 | S>Y | No |
TOPMed ClinGen |
|
|
rs35935939 CA6866501 VAR_050765 |
253 | A>T | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen UniProt dbSNP |
|
|
rs760478976 CA6866499 |
254 | E>K | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs1566140446 CA387197978 |
256 | H>P | No |
ClinGen Ensembl |
|
|
rs1457739118 CA387197971 |
257 | L>F | No |
gnomAD ClinGen |
|
|
rs750417728 CA6866498 |
258 | I>N | No |
ExAC gnomAD ClinGen |
|
|
CA387197966 rs1416214124 |
258 | I>V | No |
gnomAD ClinGen |
|
|
rs767440353 CA6866497 |
260 | E>* | No |
ClinGen ExAC gnomAD |
|
|
rs767440353 CA245211210 |
260 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs1281728141 CA387197945 |
261 | R>K | No |
ClinGen TOPMed |
|
|
CA6866496 rs776907090 |
262 | P>L | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA387197938 rs1400014090 |
262 | P>S | No |
gnomAD ClinGen |
|
|
CA6866493 rs762582864 |
264 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs375441686 CA387197920 |
265 | I>M | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
rs775068543 CA6866492 |
265 | I>N | No |
ExAC gnomAD ClinGen |
|
|
rs775068543 CA245211201 |
265 | I>S | No |
ExAC gnomAD ClinGen |
|
|
rs1210815985 CA387197918 |
266 | P>A | No |
ClinGen gnomAD |
|
|
rs1330145699 CA387197916 |
266 | P>H | No |
gnomAD ClinGen |
|
|
rs1210815985 CA387197917 |
266 | P>S | No |
ClinGen gnomAD |
|
|
rs1047655593 CA245211197 |
267 | P>A | No |
TOPMed gnomAD ClinGen |
|
|
rs371367334 CA6866488 |
267 | P>H | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
rs371367334 CA387197911 |
267 | P>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs371367334 CA6866489 |
267 | P>R | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
CA387197913 rs1047655593 |
267 | P>T | No |
ClinGen TOPMed gnomAD |
|
| rs773752200 | 268 | I>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs754952662 CA6866485 |
268 | I>L | No |
ClinGen ExAC TOPMed |
|
|
CA387197904 rs1440878962 |
268 | I>N | No |
gnomAD ClinGen |
|
| rs773752200 | 268 | I>S | Variant assessed as Somatic; 0.0001031 impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA6866482 rs367836688 |
269 | A>T | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
rs575729715 CA6866480 |
271 | D>N | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA387197869 rs575729715 |
271 | D>Y | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA6866479 rs557015529 |
272 | R>Q | No |
1000Genomes ExAC TOPMed gnomAD ClinGen |
|
|
rs1377746932 CA387197849 |
273 | S>G | No |
gnomAD ClinGen |
|
|
CA245211186 rs1011724540 |
273 | S>R | No |
ClinGen TOPMed |
|
|
rs375219968 CA387197835 |
274 | G>C | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
CA387197830 rs1452576522 |
274 | G>D | No |
gnomAD ClinGen |
|
|
rs375219968 CA6866478 COSM1605732 |
274 | G>S | liver [Cosmic] | No |
ESP ExAC TOPMed gnomAD ClinGen cosmic curated |
|
rs762385624 CA6866475 |
275 | E>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6866476 rs763676420 |
275 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs1283853137 CA387197809 |
276 | Q>E | No |
ClinGen gnomAD |
|
|
rs775158461 CA6866474 |
276 | Q>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA245211179 rs1001610609 |
277 | H>Q | No |
TOPMed gnomAD ClinGen |
|
|
CA6866472 rs140865573 |
279 | P>L | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
rs769392304 CA387197766 |
279 | P>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ExAC gnomAD ClinGen NCI-TCGA |
|
rs769392304 CA6866473 |
279 | P>T | No |
ExAC gnomAD ClinGen |
|
|
CA387197754 rs1436314672 |
280 | A>V | No |
ClinGen gnomAD |
|
|
CA6866470 rs550237057 |
281 | R>C | No |
ExAC gnomAD ClinGen |
|
|
CA387197747 rs550237057 |
281 | R>G | No |
ExAC gnomAD ClinGen |
|
|
CA6866469 rs17886730 VAR_030302 |
281 | R>H | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen UniProt dbSNP |
|
|
rs1172537246 CA387197735 |
282 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
rs200979183 CA6866467 |
284 | P>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1432720974 CA387197692 |
284 | P>S | No |
ClinGen gnomAD |
|
|
CA387197675 rs1293472813 |
285 | H>Q | No |
ClinGen gnomAD |
|
|
CA387197677 rs1448621465 |
285 | H>R | No |
gnomAD ClinGen |
|
|
CA6866464 rs750311604 |
288 | H>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6866462 rs34103982 |
289 | V>I | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA245211165 rs962982196 |
290 | G>A | No |
ClinGen TOPMed gnomAD |
|
|
rs1210262937 CA387197613 |
290 | G>R | No |
gnomAD ClinGen |
|
|
rs1594439598 CA387197587 |
291 | V>G | No |
ClinGen Ensembl |
|
|
rs763901244 CA6866459 |
292 | A>S | No |
ExAC gnomAD ClinGen |
|
|
CA6866458 rs138659670 |
293 | H>R | No |
ESP ExAC gnomAD ClinGen |
|
|
CA387197561 rs1016337164 |
294 | R>G | No |
TOPMed gnomAD ClinGen |
|
|
CA6866457 rs371993242 |
294 | R>Q | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
CA245211162 COSM202858 rs1016337164 |
294 | R>W | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
|
CA6866456 rs764932395 |
295 | I>L | No |
ExAC gnomAD ClinGen |
|
|
CA387197542 rs1371921840 |
296 | H>P | No |
ClinGen gnomAD |
|
|
CA387197543 rs1412411466 |
296 | H>Y | No |
gnomAD ClinGen |
|
|
CA6866454 rs776087763 |
298 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs762042535 CA6866453 |
299 | T>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1164797678 CA387197510 |
299 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
rs762042535 CA6866452 |
299 | T>P | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA6866451 rs774954540 |
300 | P>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ExAC TOPMed gnomAD ClinGen NCI-TCGA |
|
rs1348825981 CA387197503 |
300 | P>S | No |
TOPMed ClinGen |
|
|
CA6866448 rs775697940 |
301 | P>L | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs1254118422 CA387197490 |
302 | Q>* | No |
ClinGen TOPMed gnomAD |
|
|
rs746104723 CA6866446 |
303 | A>T | No |
ClinGen ExAC |
|
| TCGA novel | 304 | Q>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs781210447 CA6866444 |
304 | Q>E | No |
ExAC TOPMed gnomAD ClinGen |
|
|
COSM1359875 CA6866443 rs757094564 |
304 | Q>H | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA387197455 rs1566139266 |
304 | Q>P | No |
ClinGen Ensembl |
|
|
rs967468364 CA245211144 |
305 | P>S | No |
ClinGen TOPMed gnomAD |
|
|
rs777802261 CA6866441 |
306 | E>K | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA6866440 rs199932702 |
308 | K>N | No |
1000Genomes ExAC gnomAD ClinGen |
|
|
CA6866439 rs371331413 |
309 | T>N | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
CA387197386 rs368325953 |
311 | A>E | No |
ClinGen ESP ExAC gnomAD |
|
|
rs368325953 CA6866436 |
311 | A>V | No |
ClinGen ESP ExAC gnomAD |
|
|
CA245211133 rs774556689 |
313 | D>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6866433 rs774556689 |
313 | D>N | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA387197350 rs1566139033 |
314 | Q>H | No |
ClinGen Ensembl |
|
|
rs370479179 CA6866431 |
317 | G>R | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
rs1177866107 CA387197313 |
318 | G>D | No |
gnomAD ClinGen |
|
|
rs1594438850 CA387197285 |
321 | V>E | No |
ClinGen Ensembl |
|
|
CA387197283 rs1470013253 |
322 | R>G | No |
ClinGen gnomAD |
|
|
rs776071974 CA6866430 |
322 | R>K | No |
ClinGen ExAC gnomAD |
|
|
CA6866428 rs745884206 |
324 | H>Y | No |
ClinGen ExAC gnomAD |
|
|
rs372584509 CA6866426 |
326 | G>R | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
CA6866425 rs199877368 |
327 | T>M | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen |
|
|
rs771790655 CA6866423 |
330 | T>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ExAC TOPMed gnomAD ClinGen NCI-TCGA |
| TCGA novel | 330 | T>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1421301423 CA387197188 |
332 | V>R | No |
ClinGen TOPMed |
No associated diseases with Q53HC0
1 regional properties for Q53HC0
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | 1,3-beta-glucan synthase component FKS1-like, domain-1 | 318 - 430 | IPR026899 |
5 GO annotations of cellular component
| Name | Definition |
|---|---|
| centriole | A cellular organelle, found close to the nucleus in many eukaryotic cells, consisting of a small cylinder with microtubular walls, 300-500 nm long and 150-250 nm in diameter. It contains nine short, parallel, peripheral microtubular fibrils, each fibril consisting of one complete microtubule fused to two incomplete microtubules. Cells usually have two centrioles, lying at right angles to each other. At division, each pair of centrioles generates another pair and the twin pairs form the pole of the mitotic spindle. |
| centrosome | A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle. |
| cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
| intracellular membrane-bounded organelle | Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. |
| nucleoplasm | That part of the nuclear content other than the chromosomes or the nucleolus. |
1 GO annotations of molecular function
| Name | Definition |
|---|---|
| identical protein binding | Binding to an identical protein or proteins. |
2 GO annotations of biological process
| Name | Definition |
|---|---|
| innate immune response | Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens. |
| regulation of defense response to virus | Any process that modulates the frequency, rate or extent of the antiviral response of a cell or organism. |
1 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q8VDN4 | Ccdc92 | Coiled-coil domain-containing protein 92 | Mus musculus (Mouse) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MTSPHFSSYD | EGPLDVSMAA | TNLENQLHSA | QKNLLFLQRE | HASTLKGLHS | EIRRLQQHCT |
| 70 | 80 | 90 | 100 | 110 | 120 |
| DLTYELTVKS | SEQTGDGTSK | SSELKKRCEE | LEAQLKVKEN | ENAELLKELE | QKNAMITVLE |
| 130 | 140 | 150 | 160 | 170 | 180 |
| NTIKEREKKY | LEELKAKSHK | LTLLSSELEQ | RASTIAYLTS | QLHAAKKKLM | SSSGTSDASP |
| 190 | 200 | 210 | 220 | 230 | 240 |
| SGSPVLASYK | PAPPKDKLPE | TPRRRMKKSL | SAPLHPEFEE | VYRFGAESRK | LLLREPVDAM |
| 250 | 260 | 270 | 280 | 290 | 300 |
| PDPTPFLLAR | ESAEVHLIKE | RPLVIPPIAS | DRSGEQHSPA | REKPHKAHVG | VAHRIHHATP |
| 310 | 320 | 330 | |||
| PQAQPEVKTL | AVDQVNGGKV | VRKHSGTDRT | V |