Q13200
Gene name |
PSMD2 (TRAP2) |
Protein name |
26S proteasome non-ATPase regulatory subunit 2 |
Names |
26S proteasome regulatory subunit RPN1, 26S proteasome regulatory subunit S2, 26S proteasome subunit p97, Protein 55.11, Tumor necrosis factor type 1 receptor-associated protein 2 |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:5708 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
59 structures for Q13200
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| 5GJQ | EM | 450 A | Z | 1-908 | PDB |
| 5GJR | EM | 350 A | AC/Z | 1-908 | PDB |
| 5L4K | EM | 450 A | Z | 1-908 | PDB |
| 5LN3 | EM | 680 A | Z | 1-908 | PDB |
| 5T0C | EM | 380 A | Af/Bf | 1-908 | PDB |
| 5T0G | EM | 440 A | f | 164-908 | PDB |
| 5T0H | EM | 680 A | f | 164-908 | PDB |
| 5T0I | EM | 800 A | f | 164-908 | PDB |
| 5T0J | EM | 800 A | f | 164-908 | PDB |
| 5VFP | EM | 420 A | f | 1-908 | PDB |
| 5VFQ | EM | 420 A | f | 1-908 | PDB |
| 5VFR | EM | 490 A | f | 1-908 | PDB |
| 5VFS | EM | 360 A | f | 6-853 | PDB |
| 5VFT | EM | 700 A | f | 1-908 | PDB |
| 5VFU | EM | 580 A | f | 1-908 | PDB |
| 5VHF | EM | 570 A | f | 6-853 | PDB |
| 5VHH | EM | 610 A | f | 6-853 | PDB |
| 5VHI | EM | 680 A | f | 6-853 | PDB |
| 5VHJ | EM | 850 A | f | 70-853 | PDB |
| 5VHM | EM | 830 A | f | 6-853 | PDB |
| 5VHN | EM | 730 A | f | 6-853 | PDB |
| 5VHO | EM | 830 A | f | 6-853 | PDB |
| 5VHP | EM | 790 A | f | 70-853 | PDB |
| 5VHQ | EM | 890 A | f | 6-853 | PDB |
| 5VHR | EM | 770 A | f | 6-853 | PDB |
| 5VHS | EM | 880 A | f | 70-853 | PDB |
| 6MSB | EM | 300 A | f | 1-908 | PDB |
| 6MSD | EM | 320 A | f | 1-908 | PDB |
| 6MSG | EM | 350 A | f | 1-892 | PDB |
| 6MSH | EM | 360 A | f | 1-892 | PDB |
| 6MSJ | EM | 330 A | f | 1-892 | PDB |
| 6MSK | EM | 320 A | f | 1-892 | PDB |
| 6WJD | EM | 480 A | f | 1-908 | PDB |
| 6WJN | EM | 570 A | f | 1-908 | PDB |
| 7QXN | EM | 370 A | f | 1-908 | PDB |
| 7QXP | EM | 360 A | f | 1-908 | PDB |
| 7QXU | EM | 430 A | f | 1-908 | PDB |
| 7QXW | EM | 410 A | f | 1-908 | PDB |
| 7QXX | EM | 440 A | f | 1-908 | PDB |
| 7QY7 | EM | 470 A | f | 1-908 | PDB |
| 7QYA | EM | 480 A | f | 1-908 | PDB |
| 7QYB | EM | 410 A | f | 1-908 | PDB |
| 7UIH | EM | 310 A | A | 260-903 | PDB |
| 7UJD | EM | 250 A | A | 260-903 | PDB |
| 7W37 | EM | 300 A | f | 1-908 | PDB |
| 7W38 | EM | 310 A | f | 1-908 | PDB |
| 7W39 | EM | 320 A | f | 1-908 | PDB |
| 7W3A | EM | 350 A | f | 1-908 | PDB |
| 7W3B | EM | 360 A | f | 1-908 | PDB |
| 7W3C | EM | 340 A | f | 1-908 | PDB |
| 7W3F | EM | 330 A | f | 1-908 | PDB |
| 7W3G | EM | 320 A | f | 1-908 | PDB |
| 7W3H | EM | 320 A | f | 1-908 | PDB |
| 7W3I | EM | 350 A | f | 1-908 | PDB |
| 7W3J | EM | 350 A | f | 1-908 | PDB |
| 7W3K | EM | 360 A | f | 1-908 | PDB |
| 7W3M | EM | 350 A | f | 1-908 | PDB |
| 8CVT | EM | 300 A | f | 1-908 | PDB |
| AF-Q13200-F1 | Predicted | AlphaFoldDB |
534 variants for Q13200
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
rs1321912876 CA355431007 |
2 | E>G | No |
ClinGen TOPMed gnomAD |
|
|
rs1439760850 CA355431044 |
4 | G>A | No |
ClinGen gnomAD |
|
|
CA355431040 rs1368125332 |
4 | G>R | No |
ClinGen gnomAD |
|
|
CA88880498 rs995135642 |
5 | G>S | No |
ClinGen TOPMed gnomAD |
|
|
rs987160008 CA88880502 |
6 | R>Q | No |
ClinGen Ensembl |
|
|
CA88880499 rs967300698 |
6 | R>W | No |
ClinGen TOPMed gnomAD |
|
|
rs182086670 CA2730971 |
7 | D>E | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1027646726 CA88880509 |
7 | D>Y | No |
ClinGen TOPMed |
|
|
CA355431101 rs1330373298 |
8 | K>E | No |
ClinGen TOPMed gnomAD |
|
|
rs1288082425 CA355431107 |
8 | K>R | No |
ClinGen TOPMed |
|
|
rs1161714285 CA355431129 |
9 | A>G | No |
ClinGen TOPMed |
|
|
CA88880525 rs975275652 |
9 | A>P | No |
ClinGen TOPMed gnomAD |
|
|
rs1161714285 CA355431131 |
9 | A>V | No |
ClinGen TOPMed |
|
|
CA355431144 rs1271399136 |
10 | P>L | No |
ClinGen gnomAD |
|
|
rs1577154180 CA355431140 |
10 | P>S | No |
ClinGen Ensembl |
|
|
CA88880530 rs749122931 |
13 | P>A | No |
ClinGen gnomAD |
|
|
CA355431202 rs1190989842 |
13 | P>L | No |
ClinGen TOPMed |
|
|
CA355431194 rs749122931 |
13 | P>S | No |
ClinGen gnomAD |
|
|
rs775866930 CA2730973 |
16 | S>F | No |
ClinGen ExAC TOPMed |
|
|
CA355431265 rs1248659202 |
18 | A>V | No |
ClinGen gnomAD |
|
|
rs764580797 CA2730975 |
20 | A>G | No |
ClinGen ExAC gnomAD |
|
|
rs1488587348 CA355431315 |
21 | P>R | No |
ClinGen TOPMed |
|
|
CA88880560 rs974940898 |
25 | D>Y | No |
ClinGen TOPMed |
|
|
CA355431397 rs1203475854 |
26 | E>G | No |
ClinGen TOPMed gnomAD |
|
|
CA88880575 rs1046699477 |
27 | K>E | No |
ClinGen TOPMed gnomAD |
|
|
CA355431453 rs1305715113 |
29 | S>G | No |
ClinGen TOPMed |
|
|
rs1161247727 CA355431466 |
29 | S>R | No |
ClinGen TOPMed gnomAD |
|
|
CA355431502 rs1391738056 |
31 | K>R | No |
ClinGen gnomAD |
|
|
rs17524338 CA355431535 |
33 | R>G | No |
ClinGen TOPMed gnomAD |
|
|
rs949655355 CA355431546 |
33 | R>L | No |
ClinGen TOPMed |
|
|
CA88880590 rs949655355 |
33 | R>Q | No |
ClinGen TOPMed |
|
|
rs17524338 CA88880585 |
33 | R>W | No |
ClinGen TOPMed gnomAD |
|
|
CA88880591 rs548375988 |
35 | D>E | No |
ClinGen Ensembl |
|
|
CA2730976 rs200274075 |
39 | K>E | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA88880622 rs905447773 |
40 | D>N | No |
ClinGen TOPMed gnomAD |
|
|
rs535724648 CA2730977 |
42 | E>K | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA355431691 rs1442312877 |
43 | Q>E | No |
ClinGen gnomAD |
|
|
CA88880628 rs1130488 |
43 | Q>L | No |
ClinGen Ensembl |
|
|
CA355431729 rs1351460981 |
44 | E>D | No |
ClinGen gnomAD |
|
|
CA355431906 rs1356190700 |
48 | E>Q | No |
ClinGen TOPMed |
|
|
rs1206952258 CA355431946 |
49 | D>E | No |
ClinGen gnomAD |
|
|
CA355431968 rs1326847050 |
50 | K>R | No |
ClinGen TOPMed |
|
|
rs1237970940 CA355431989 |
51 | Q>E | No |
ClinGen Ensembl |
|
|
rs775642103 CA2730991 |
52 | L>F | No |
ClinGen ExAC gnomAD |
|
|
CA355432075 rs1441720208 |
55 | E>K | No |
ClinGen gnomAD |
|
|
rs1429660453 CA355432118 |
58 | M>L | No |
ClinGen TOPMed |
|
|
rs747364667 CA2730992 |
59 | L>V | No |
ClinGen ExAC gnomAD |
|
|
rs777094564 CA2730994 |
60 | V>L | No |
ClinGen ExAC gnomAD |
|
|
rs762271069 CA355432189 |
63 | L>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs376597661 CA2730996 |
64 | G>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA355432771 rs1172961641 |
68 | T>S | No |
ClinGen TOPMed |
|
|
rs956561285 CA355432790 |
69 | S>F | No |
ClinGen TOPMed |
|
|
rs956561285 CA88881323 |
69 | S>Y | No |
ClinGen TOPMed |
|
|
rs760456709 CA2731024 |
70 | L>Q | No |
ClinGen ExAC gnomAD |
|
|
rs1577154880 CA355432809 |
71 | Y>C | No |
ClinGen Ensembl |
|
|
rs1577154885 CA355432816 COSM3695947 |
72 | R>* | large_intestine [Cosmic] | No |
ClinGen cosmic curated Ensembl |
|
CA2731026 rs753772505 COSM3331073 |
72 | R>Q | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
CA355432825 rs1472581664 |
73 | P>T | No |
ClinGen gnomAD |
|
|
CA2731028 rs370141233 |
74 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA2731029 rs751664178 |
74 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs1387166632 CA355432856 |
75 | L>R | No |
ClinGen gnomAD |
|
|
rs1325224898 CA355432862 |
76 | E>A | No |
ClinGen gnomAD |
|
|
rs1553842003 CA355432882 |
77 | E>G | No |
ClinGen Ensembl |
|
|
CA2731034 rs778312103 |
81 | Q>H | No |
ClinGen ExAC gnomAD |
|
|
rs556821583 CA88881346 |
81 | Q>K | No |
ClinGen 1000Genomes |
|
|
rs749719125 CA2731035 |
83 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs771489110 CA2731036 |
84 | S>F | No |
ClinGen ExAC gnomAD |
|
|
CA355432995 rs1560193304 |
87 | T>A | No |
ClinGen Ensembl |
|
|
CA355432994 rs1560193304 |
87 | T>P | No |
ClinGen Ensembl |
|
|
rs1248906892 CA355433093 |
95 | P>R | No |
ClinGen gnomAD |
|
|
rs775342154 CA355433141 |
99 | L>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA355433151 rs1474268582 |
100 | R>C | No |
ClinGen gnomAD |
|
|
COSM1042007 rs952433532 CA88881374 |
100 | R>H | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
|
rs1459685030 CA355433167 |
101 | P>R | No |
ClinGen gnomAD |
|
|
rs760497021 CA2731041 |
101 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA355433172 rs763837991 |
102 | H>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2731043 rs776524874 |
102 | H>R | No |
ClinGen ExAC gnomAD |
|
|
CA2731042 rs763837991 |
102 | H>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1408932877 CA355433192 |
103 | Y>C | No |
ClinGen TOPMed gnomAD |
|
|
CA355433190 rs1408932877 |
103 | Y>S | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 104 | G>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2731045 rs765176446 |
104 | G>S | No |
ClinGen ExAC |
|
|
rs1352216468 CA355433232 |
105 | K>I | No |
ClinGen gnomAD |
|
|
rs1352216468 CA355433236 |
105 | K>R | No |
ClinGen gnomAD |
|
| TCGA novel | 106 | L>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1560193344 CA355433244 |
106 | L>V | No |
ClinGen Ensembl |
|
|
CA355433282 rs1412413435 |
108 | E>K | No |
ClinGen gnomAD |
|
|
rs751631530 CA2731046 |
109 | I>M | No |
ClinGen ExAC gnomAD |
|
|
CA2731047 rs760792378 |
110 | Y>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA88881415 rs940815890 |
111 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
CA355433470 rs1341912350 |
113 | M>I | No |
ClinGen gnomAD |
|
|
rs767700823 CA2731048 |
113 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs140383569 CA2731049 |
114 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA2731050 rs756389794 |
115 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs577890097 CA2731051 |
118 | N>T | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA2731066 rs142662907 |
120 | R>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs148261898 CA2731067 |
120 | R>H | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA2731068 rs148261898 |
120 | R>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1190723597 CA355433956 |
124 | D>N | No |
ClinGen gnomAD |
|
|
rs895019658 CA355433990 |
125 | I>L | No |
ClinGen TOPMed |
|
|
CA88882257 rs895019658 |
125 | I>V | No |
ClinGen TOPMed |
|
|
CA2731071 rs530139598 |
126 | I>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs186752843 CA2731073 |
128 | V>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs201660584 CA2731074 |
129 | L>F | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA355434182 CA2731076 rs746545064 |
131 | M>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs200473712 CA2731075 |
131 | M>V | No |
ClinGen ExAC gnomAD |
|
|
rs1048249628 CA88882282 |
132 | T>S | No |
ClinGen TOPMed |
|
|
CA2731077 rs768130150 |
133 | M>K | No |
ClinGen ExAC gnomAD |
|
|
CA355434251 rs1365944005 |
135 | G>R | No |
ClinGen TOPMed gnomAD |
|
|
CA355434302 rs1577155784 |
136 | E>D | No |
ClinGen Ensembl |
|
|
rs1218936707 CA355434281 |
136 | E>Q | No |
ClinGen gnomAD |
|
|
CA355434322 rs1445231883 |
137 | R>C | No |
ClinGen TOPMed |
|
|
rs747871836 CA2731079 |
137 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA355434379 rs1314402781 |
139 | C>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1214242104 CA355434432 |
141 | K>R | No |
ClinGen gnomAD |
|
|
CA2731082 rs762827916 |
143 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs773018817 CA2731081 |
143 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs367713758 CA88882296 |
144 | L>V | No |
ClinGen Ensembl |
|
|
CA2731084 rs775364239 |
145 | V>E | No |
ClinGen ExAC gnomAD |
|
|
rs775364239 CA355434539 |
145 | V>G | No |
ClinGen ExAC gnomAD |
|
|
CA2731083 rs770868520 |
145 | V>M | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 149 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1434888437 CA355434618 |
149 | E>K | No |
ClinGen gnomAD |
|
| TCGA novel | 150 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1410672172 CA355434788 |
155 | G>C | No |
ClinGen gnomAD |
|
|
rs1457255828 CA355434790 |
155 | G>D | No |
ClinGen gnomAD |
|
|
CA355435135 rs1488240799 |
161 | H>Y | No |
ClinGen TOPMed |
|
|
CA355435161 rs1352737955 |
162 | L>M | No |
ClinGen gnomAD |
|
|
CA355435323 rs1251018643 |
169 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
rs1577156021 CA355435350 |
170 | W>G | No |
ClinGen Ensembl |
|
|
rs777468358 CA2731116 |
171 | Q>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2731117 rs201398028 |
172 | E>G | No |
ClinGen ExAC gnomAD |
|
|
rs778685647 CA2731119 |
173 | L>R | No |
ClinGen ExAC gnomAD |
|
|
CA2731118 rs770810099 |
173 | L>V | No |
ClinGen ExAC gnomAD |
|
|
CA2731123 rs776796891 |
174 | D>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs771927657 CA2731121 |
174 | D>N | No |
ClinGen ExAC gnomAD |
|
|
rs776796891 CA2731122 |
174 | D>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs11545172 CA88882581 |
176 | A>P | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
VAR_051554 rs11545172 CA2731125 |
176 | A>T | No |
ClinGen UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA355435634 rs1577156079 |
179 | V>G | No |
ClinGen Ensembl |
|
|
CA2731128 COSM479786 rs201776756 |
181 | R>Q | kidney [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC TOPMed gnomAD |
|
COSM1042009 rs11545181 CA2731127 |
181 | R>W | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
CA355435724 rs1448763536 |
182 | E>D | No |
ClinGen gnomAD |
|
|
rs1452145782 CA355435737 |
183 | P>A | No |
ClinGen gnomAD |
|
|
rs752198356 CA2731131 |
187 | L>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1363228124 CA355435832 |
187 | L>V | No |
ClinGen gnomAD |
|
|
CA2731132 rs755678933 |
188 | V>L | No |
ClinGen ExAC gnomAD |
|
|
CA355435918 rs1342596478 |
189 | K>R | No |
ClinGen gnomAD |
|
|
rs373804604 CA2731134 |
192 | V>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA88882613 rs867093823 |
193 | P>S | No |
ClinGen Ensembl |
|
|
rs1210165536 CA355436037 |
194 | Y>C | No |
ClinGen TOPMed gnomAD |
|
|
rs141270952 CA2731136 |
196 | M>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs939804772 CA88882620 |
197 | A>D | No |
ClinGen TOPMed |
|
|
CA2731137 rs745667344 |
199 | N>S | No |
ClinGen ExAC gnomAD |
|
|
rs1036872044 CA88882635 |
200 | A>G | No |
ClinGen TOPMed |
|
|
CA355437903 rs1391242344 |
202 | H>N | No |
ClinGen gnomAD |
|
|
rs928649036 CA88882658 |
206 | D>N | No |
ClinGen gnomAD |
|
|
CA355438044 rs1415130683 |
209 | M>K | No |
ClinGen gnomAD |
|
|
rs1318150733 CA355438037 |
209 | M>V | No |
ClinGen TOPMed |
|
|
rs146926317 CA355438104 |
211 | I>M | No |
ClinGen ESP ExAC gnomAD |
|
|
rs748228887 CA2731140 |
211 | I>T | No |
ClinGen ExAC gnomAD |
|
|
CA2731142 rs773453167 |
212 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA355438111 rs773453167 |
212 | E>Q | No |
ClinGen ExAC gnomAD |
|
|
CA2731143 rs749475591 |
214 | V>L | No |
ClinGen ExAC gnomAD |
|
|
rs1560194080 CA355438177 |
215 | D>G | No |
ClinGen Ensembl |
|
|
rs1273042885 CA355438233 |
218 | E>Q | No |
ClinGen gnomAD |
|
|
rs1200944457 CA355438276 |
220 | D>N | No |
ClinGen TOPMed gnomAD |
|
|
CA2731145 rs377538425 |
221 | I>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA2731146 rs759882711 |
221 | I>T | No |
ClinGen ExAC gnomAD |
|
|
CA88882764 rs990768776 |
226 | Y>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs145636508 CA2731151 |
227 | A>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA88882810 rs1049856062 |
230 | C>S | No |
ClinGen TOPMed gnomAD |
|
|
CA355438426 rs764804657 |
231 | L>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs764804657 CA2731153 |
231 | L>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA88882842 rs916508453 |
233 | L>F | No |
ClinGen Ensembl |
|
|
rs750230458 CA2731154 |
234 | T>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs137934742 CA2731155 |
234 | T>I | No |
ClinGen ESP ExAC gnomAD |
|
|
CA2731156 rs137934742 |
234 | T>S | No |
ClinGen ESP ExAC gnomAD |
|
|
CA2731177 rs781344064 |
236 | C>Y | No |
ClinGen ExAC gnomAD |
|
|
CA355438546 rs374114964 |
239 | Y>* | No |
ClinGen ESP TOPMed gnomAD |
|
|
rs753938322 CA2731179 |
240 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2731178 rs753938322 |
240 | V>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA2731180 rs779163764 |
248 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2731181 rs746038923 |
249 | L>V | No |
ClinGen ExAC gnomAD |
|
|
rs1560194333 CA355438610 |
250 | R>C | No |
ClinGen Ensembl |
|
|
CA2731183 rs11545182 |
250 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs11545182 CA88883246 |
250 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2731182 rs11545182 |
250 | R>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs747380842 CA2731184 |
252 | A>P | No |
ClinGen ExAC gnomAD |
|
|
CA355438621 rs1560194344 |
252 | A>V | No |
ClinGen Ensembl |
|
|
CA355438651 rs1478479897 |
257 | R>Q | No |
ClinGen TOPMed |
|
|
TCGA novel rs1368437053 CA355438669 |
259 | F>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen gnomAD NCI-TCGA |
|
CA2731186 rs777066270 |
261 | R>C | No |
ClinGen ExAC gnomAD |
|
|
rs1298665894 CA355438680 |
261 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA2731188 rs769231820 |
263 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs762633421 CA2731190 |
269 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs751393532 CA2731192 |
271 | M>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA355438751 rs1266963143 |
272 | L>F | No |
ClinGen TOPMed |
|
|
CA2731193 rs759460610 |
272 | L>H | No |
ClinGen ExAC gnomAD |
|
|
CA2731194 rs767466862 |
273 | N>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs1199903844 CA355438757 COSM287679 |
273 | N>S | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
|
CA355438765 rs1334435278 |
274 | D>G | No |
ClinGen TOPMed |
|
|
rs1256925768 CA355438761 |
274 | D>N | No |
ClinGen gnomAD |
|
|
rs201882149 CA2731196 |
275 | M>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
rs752616354 CA2731195 |
275 | M>V | No |
ClinGen ExAC gnomAD |
|
|
CA2731197 rs778810514 |
276 | E>Q | No |
ClinGen ExAC gnomAD |
|
|
CA355438788 rs1577156723 |
277 | L>F | No |
ClinGen Ensembl |
|
|
CA355438809 rs1006449808 CA355438810 |
280 | D>E | No |
ClinGen gnomAD |
|
|
CA88883351 rs116732617 |
280 | D>N | No |
ClinGen 1000Genomes gnomAD |
|
|
rs1316093327 CA355438813 |
281 | I>V | No |
ClinGen TOPMed |
|
|
CA355438831 rs1464121460 |
283 | T>I | No |
ClinGen gnomAD |
|
|
rs751823560 CA2731218 |
295 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs1284421460 CA355438940 |
297 | M>L | No |
ClinGen gnomAD |
|
|
CA355438959 rs1218177632 |
300 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs967955186 CA88883582 |
300 | R>W | No |
ClinGen TOPMed gnomAD |
|
|
CA355438962 rs1333833523 |
301 | H>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
CA355438976 rs1243703003 |
303 | V>M | No |
ClinGen gnomAD |
|
|
CA355438983 rs1487377657 |
304 | F>L | No |
ClinGen TOPMed gnomAD |
|
|
CA2731220 rs781349669 |
304 | F>S | No |
ClinGen ExAC gnomAD |
|
|
CA355438992 rs1577156902 |
305 | L>P | No |
ClinGen Ensembl |
|
|
CA88883592 rs923890379 |
312 | E>K | No |
ClinGen Ensembl |
|
|
VAR_051555 rs11545169 CA2731223 |
313 | E>D | No |
ClinGen UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA88883594 rs975961889 |
316 | D>H | No |
ClinGen Ensembl |
|
|
rs745468990 CA2731227 CA355439162 |
321 | M>I | No |
ClinGen ExAC gnomAD |
|
|
rs1312807492 CA355439155 |
321 | M>T | No |
ClinGen gnomAD |
|
|
rs1171625615 CA355439148 |
321 | M>V | No |
ClinGen TOPMed |
|
|
CA2731228 rs771770952 |
322 | S>C | No |
ClinGen ExAC gnomAD |
|
|
rs763927587 CA2731231 |
324 | V>A | No |
ClinGen ExAC gnomAD |
|
|
rs1229093319 CA355439239 |
329 | N>S | No |
ClinGen gnomAD |
|
|
rs1287851299 CA355439254 |
331 | L>S | No |
ClinGen gnomAD |
|
| TCGA novel | 334 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1201255374 CA355439311 |
335 | R>Q | No |
ClinGen TOPMed |
|
|
rs1437935558 CA355439483 |
340 | M>I | No |
ClinGen gnomAD |
|
| TCGA novel | 341 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 342 | P>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs759716680 CA2731254 |
343 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1235216952 CA355439559 |
344 | V>L | No |
ClinGen gnomAD |
|
|
rs140070375 CA355439598 |
346 | D>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs760837984 CA2731257 |
352 | H>Y | No |
ClinGen ExAC gnomAD |
|
|
CA2731258 rs764503670 |
353 | L>V | No |
ClinGen ExAC gnomAD |
|
|
rs369135415 CA355439817 |
354 | E>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA355439843 rs1163672991 |
355 | N>K | No |
ClinGen TOPMed |
|
|
rs372775967 CA88883876 |
356 | N>T | No |
ClinGen ESP TOPMed |
|
|
rs762333368 CA2731279 |
357 | R>K | No |
ClinGen ExAC gnomAD |
|
|
rs765806900 CA2731280 |
359 | G>A | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 360 | G>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2731281 rs750986370 |
362 | G>S | No |
ClinGen ExAC gnomAD |
|
|
CA355440128 rs1449085433 |
363 | S>Y | No |
ClinGen gnomAD |
|
|
CA355440257 rs1268747462 |
368 | A>V | No |
ClinGen gnomAD |
|
|
rs765869035 CA2731283 |
369 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs751031194 CA2731284 |
369 | R>H | No |
ClinGen ExAC gnomAD |
|
|
CA2731285 rs754615777 |
370 | M>V | No |
ClinGen ExAC gnomAD |
|
|
rs1456973685 CA355440374 |
374 | S>A | No |
ClinGen TOPMed gnomAD |
|
|
rs1011325406 CA88884273 |
375 | S>A | No |
ClinGen TOPMed gnomAD |
|
|
CA355440399 rs1011325406 |
375 | S>T | No |
ClinGen TOPMed gnomAD |
|
|
rs1020113114 CA88884276 |
378 | N>T | No |
ClinGen TOPMed |
|
|
rs11545180 CA88884282 |
380 | F>L | No |
ClinGen Ensembl |
|
|
CA88884302 rs11545170 |
385 | F>L | No |
ClinGen Ensembl |
|
|
rs550480404 CA88884308 |
386 | G>D | No |
ClinGen gnomAD |
|
|
rs550480404 CA88884320 |
386 | G>V | No |
ClinGen gnomAD |
|
|
rs374222348 CA2731291 |
391 | L>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs747143331 CA2731293 |
393 | D>N | No |
ClinGen ExAC gnomAD |
|
|
CA2731294 rs768995063 |
401 | K>R | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 403 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2731296 rs762243513 |
404 | D>E | No |
ClinGen ExAC gnomAD |
|
|
rs1252734258 CA355441198 |
410 | A>T | No |
ClinGen gnomAD |
|
|
rs201414592 CA2731307 |
412 | A>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1183219730 CA355441258 |
414 | L>F | No |
ClinGen TOPMed gnomAD |
|
|
rs1453927691 CA355441295 |
417 | I>V | No |
ClinGen TOPMed gnomAD |
|
|
CA355441389 rs1577157775 |
423 | D>G | No |
ClinGen Ensembl |
|
|
rs749050091 CA2731309 |
428 | Q>L | No |
ClinGen ExAC gnomAD |
|
|
rs749050091 CA355441471 |
428 | Q>P | No |
ClinGen ExAC gnomAD |
|
|
rs749050091 CA355441474 |
428 | Q>R | No |
ClinGen ExAC gnomAD |
|
|
rs373839346 CA2731312 |
438 | D>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA355441705 rs1397999309 |
440 | I>L | No |
ClinGen gnomAD |
|
|
CA355441879 rs1249885997 |
444 | A>T | No |
ClinGen TOPMed |
|
|
CA88884872 rs766228439 |
450 | I>M | No |
ClinGen Ensembl |
|
|
rs1263805755 CA355441950 |
450 | I>T | No |
ClinGen gnomAD |
|
|
CA2731342 rs576261146 |
450 | I>V | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA88884873 rs199548768 |
452 | N>D | No |
ClinGen 1000Genomes |
|
|
CA2731343 rs148574173 |
453 | S>A | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA355442015 rs1486940382 |
455 | V>D | No |
ClinGen TOPMed |
|
|
CA2731344 rs369498515 |
456 | R>Q | No |
ClinGen ESP ExAC gnomAD |
|
|
CA88884894 rs377110401 |
456 | R>W | No |
ClinGen ESP TOPMed |
|
|
CA355442202 rs1263710597 |
468 | D>E | No |
ClinGen gnomAD |
|
| TCGA novel | 469 | Y>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs978904012 CA88886233 |
472 | H>Y | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 475 | N>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1344991750 CA355442277 |
477 | M>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA2731348 rs758349245 |
477 | M>V | No |
ClinGen ExAC gnomAD |
|
|
CA355442442 rs1356989238 |
486 | G>S | No |
ClinGen gnomAD |
|
|
rs1245174072 CA355442496 |
488 | A>G | No |
ClinGen gnomAD |
|
|
CA2731371 rs757408797 |
489 | Y>F | No |
ClinGen ExAC gnomAD |
|
|
rs142160511 CA2731372 |
493 | N>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA355442647 rs1325480117 |
496 | D>G | No |
ClinGen TOPMed |
|
|
COSM3723239 CA2731373 rs746199926 |
497 | V>I | upper_aerodigestive_tract [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA88886450 rs758811833 |
498 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs747432967 CA2731376 |
505 | M>V | No |
ClinGen ExAC gnomAD |
|
|
CA355442850 rs1387576766 |
507 | D>E | No |
ClinGen gnomAD |
|
|
rs1164808412 CA355442837 |
507 | D>H | No |
ClinGen gnomAD |
|
|
CA355442923 rs1166624890 |
511 | S>N | No |
ClinGen TOPMed |
|
|
CA355442962 rs1328322583 |
512 | M>I | No |
ClinGen gnomAD |
|
|
rs775942974 CA2731378 |
512 | M>T | No |
ClinGen ExAC TOPMed |
|
|
rs1355182332 CA355442974 |
513 | E>A | No |
ClinGen gnomAD |
|
| TCGA novel | 513 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs758650323 CA2731395 |
514 | V>A | No |
ClinGen ExAC gnomAD |
|
|
rs780327615 CA2731396 |
517 | V>I | No |
ClinGen ExAC gnomAD |
|
|
CA355443383 rs1203901646 |
524 | M>I | No |
ClinGen gnomAD |
|
|
rs1291772833 CA355443380 |
524 | M>T | No |
ClinGen TOPMed gnomAD |
|
|
CA2731400 rs747592693 |
524 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs769383826 CA2731401 |
525 | I>V | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 526 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs770722867 CA2731404 |
529 | S>F | No |
ClinGen ExAC gnomAD |
|
|
CA355443466 rs1349292505 |
531 | N>S | No |
ClinGen TOPMed |
|
|
rs774005666 CA2731405 |
533 | D>Y | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs1197426344 CA355443511 |
534 | V>I | No |
ClinGen gnomAD |
|
|
CA355443531 rs1428675664 |
535 | T>I | No |
ClinGen gnomAD |
|
|
rs942380887 CA88887989 |
536 | S>A | No |
ClinGen Ensembl |
|
|
rs759448769 CA355443569 |
538 | I>L | No |
ClinGen TOPMed gnomAD |
|
|
rs771882603 CA2731407 |
538 | I>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs759448769 CA88887995 |
538 | I>V | No |
ClinGen TOPMed gnomAD |
|
|
CA2731409 rs760627306 |
540 | Q>H | No |
ClinGen ExAC gnomAD |
|
|
CA88888007 rs1019229799 |
545 | K>R | No |
ClinGen TOPMed |
|
|
CA355443745 rs1345764084 |
546 | S>L | No |
ClinGen gnomAD |
|
|
rs965922836 CA88888010 |
550 | L>F | No |
ClinGen TOPMed gnomAD |
|
|
CA355443825 rs1280889124 |
551 | K>T | No |
ClinGen gnomAD |
|
|
rs1223763910 CA355443861 |
553 | T>A | No |
ClinGen gnomAD |
|
|
CA355443872 rs1276185943 |
553 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
CA355443864 rs1223763910 |
553 | T>S | No |
ClinGen gnomAD |
|
| TCGA novel | 555 | A>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs750504778 CA2731411 COSM1042013 |
556 | R>C | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
rs763100752 CA2731412 |
556 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA355443923 rs763100752 |
556 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1220884978 CA355443990 |
560 | L>F | No |
ClinGen gnomAD |
|
| TCGA novel | 560 | L>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1480763910 CA355444059 |
564 | L>F | No |
ClinGen gnomAD |
|
| TCGA novel | 564 | L>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1480763910 CA355444056 |
564 | L>V | No |
ClinGen gnomAD |
|
|
CA2731414 rs751861824 |
565 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs887173440 CA88888047 |
566 | H>P | No |
ClinGen Ensembl |
|
|
rs1390473102 CA355445472 |
569 | K>R | No |
ClinGen gnomAD |
|
|
rs1311133173 CA355445485 |
570 | G>D | No |
ClinGen TOPMed |
|
| TCGA novel | 574 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA88888141 rs1034652062 |
583 | V>M | No |
ClinGen Ensembl |
|
|
CA88888145 rs11545179 |
585 | E>Q | No |
ClinGen Ensembl |
|
|
CA2731437 rs778492670 |
588 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA355445697 rs778492670 |
588 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2731438 rs370492527 |
588 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA355445703 rs370492527 |
588 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs757989798 CA2731442 |
596 | D>G | No |
ClinGen ExAC gnomAD |
|
|
rs745494116 CA2731441 |
596 | D>Y | No |
ClinGen ExAC gnomAD |
|
|
CA88888203 rs115221820 |
597 | V>M | No |
ClinGen 1000Genomes |
|
|
CA355445785 rs1240221028 |
598 | C>F | No |
ClinGen gnomAD |
|
|
CA88888209 rs752013591 |
601 | A>G | No |
ClinGen ExAC gnomAD |
|
|
CA2731444 rs752013591 |
601 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs1364571912 CA355445833 |
604 | G>E | No |
ClinGen TOPMed |
|
|
rs754812167 CA2731468 |
605 | N>H | No |
ClinGen ExAC gnomAD |
|
|
CA355445839 rs1287654012 |
605 | N>S | No |
ClinGen gnomAD |
|
|
rs748055546 CA2731470 COSM3702376 |
611 | Q>E | liver [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA355445881 rs1343707904 |
611 | Q>H | No |
ClinGen gnomAD |
|
|
rs1389286013 CA355445892 |
613 | L>P | No |
ClinGen TOPMed |
|
|
CA355445910 rs1284111239 |
616 | C>R | No |
ClinGen gnomAD |
|
|
CA355445918 rs1312576356 |
617 | S>G | No |
ClinGen gnomAD |
|
|
CA355445921 rs1212029412 |
617 | S>T | No |
ClinGen TOPMed gnomAD |
|
|
rs746002545 CA2731473 |
618 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs772308619 CA355445947 |
620 | F>L | No |
ClinGen ExAC gnomAD |
|
|
rs138025479 CA2731475 |
623 | K>R | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA355445978 rs1447226120 |
625 | K>E | No |
ClinGen TOPMed |
|
|
CA88888556 rs886464716 |
627 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
rs777857217 CA88888558 |
629 | K>R | No |
ClinGen Ensembl |
|
|
CA355446016 rs1419207385 |
630 | D>H | No |
ClinGen Ensembl |
|
|
rs1452821669 CA355446040 |
633 | E>Q | No |
ClinGen TOPMed |
|
| TCGA novel | 636 | D>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 637 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1157430609 CA355446092 |
639 | K>R | No |
ClinGen gnomAD |
|
|
rs546883185 CA2731478 |
642 | A>P | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs546883185 CA2731477 |
642 | A>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA355446115 rs1300527907 |
643 | P>S | No |
ClinGen gnomAD |
|
| TCGA novel | 644 | A>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs568218191 CA2731479 |
644 | A>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA2731481 rs749941884 |
646 | M>R | No |
ClinGen ExAC gnomAD |
|
|
rs376292169 CA2731480 |
646 | M>V | No |
ClinGen ESP ExAC gnomAD |
|
|
rs757881754 CA2731482 |
648 | A>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2731483 rs757881754 |
648 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs995928349 CA88888604 |
649 | H>Y | No |
ClinGen TOPMed |
|
|
rs1011524886 CA88888627 |
650 | Q>E | No |
ClinGen TOPMed gnomAD |
|
|
CA2731505 rs752506498 |
651 | G>E | No |
ClinGen ExAC gnomAD |
|
|
CA88889059 rs940656565 |
652 | V>M | No |
ClinGen TOPMed |
|
|
rs755911742 CA2731506 |
654 | V>G | No |
ClinGen ExAC gnomAD |
|
|
rs777648805 CA2731507 |
655 | L>V | No |
ClinGen ExAC gnomAD |
|
|
rs780223450 CA2731510 |
657 | I>M | No |
ClinGen ExAC |
|
|
rs1560196623 CA355446211 |
657 | I>T | No |
ClinGen Ensembl |
|
|
CA2731509 rs757263795 |
657 | I>V | No |
ClinGen ExAC gnomAD |
|
|
rs747143347 CA2731511 |
660 | I>F | No |
ClinGen ExAC |
|
|
CA2731513 CA2731514 rs781306544 |
662 | M>I | No |
ClinGen ExAC gnomAD |
|
|
rs562725422 CA2731512 |
662 | M>V | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA355446244 rs1380204746 |
663 | G>R | No |
ClinGen TOPMed |
|
|
CA2731516 rs773654455 |
665 | E>D | No |
ClinGen ExAC gnomAD |
|
|
rs771487984 CA2731518 |
667 | G>A | No |
ClinGen ExAC gnomAD |
|
|
CA2731519 rs773851254 |
668 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA88889127 rs1009984125 |
670 | M>L | No |
ClinGen TOPMed gnomAD |
|
|
rs1009984125 CA355446290 |
670 | M>V | No |
ClinGen TOPMed gnomAD |
|
| rs1197580389 | 679 | L>= | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 682 | G>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1478459194 CA355446394 |
683 | E>D | No |
ClinGen TOPMed gnomAD |
|
|
CA88889668 rs990070715 |
685 | T>A | No |
ClinGen Ensembl |
|
|
rs763863284 CA2731544 |
685 | T>I | No |
ClinGen ExAC gnomAD |
|
|
rs1363584389 CA355446409 |
686 | L>P | No |
ClinGen TOPMed |
|
|
rs765241282 CA355446429 |
690 | V>I | No |
ClinGen ExAC gnomAD |
|
|
CA2731547 rs765241282 |
690 | V>L | No |
ClinGen ExAC gnomAD |
|
|
CA355446454 rs1300721006 |
694 | L>V | No |
ClinGen gnomAD |
|
|
CA2731551 rs752882608 |
699 | V>A | No |
ClinGen ExAC gnomAD |
|
|
rs1577160784 CA355446483 |
699 | V>I | No |
ClinGen Ensembl |
|
|
CA355446507 rs1287326408 |
702 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
rs749634515 CA355446510 |
703 | R>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs749634515 CA2731554 |
703 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1452464240 CA355446513 |
704 | L>V | No |
ClinGen TOPMed gnomAD |
|
|
CA355446518 rs1484891414 |
705 | N>H | No |
ClinGen TOPMed |
|
|
rs952500412 CA88889702 |
711 | S>N | No |
ClinGen TOPMed gnomAD |
|
|
CA2731557 rs746310251 |
712 | K>I | No |
ClinGen ExAC gnomAD |
|
|
CA88889709 rs140661538 COSM3427391 |
713 | F>L | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP NCI-TCGA gnomAD |
|
rs772649221 CA2731558 |
715 | H>R | No |
ClinGen ExAC gnomAD |
|
|
CA2731559 rs373076241 |
719 | P>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA2731560 rs373076241 |
719 | P>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1577160848 COSM3660387 CA355446641 |
723 | Y>C | liver [Cosmic] | No |
ClinGen cosmic curated Ensembl |
|
rs377227272 CA2731561 |
723 | Y>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA355446645 rs17856236 |
724 | N>D | No |
ClinGen gnomAD |
|
|
CA88889724 VAR_067451 rs17856236 |
724 | N>Y | No |
ClinGen UniProt dbSNP gnomAD |
|
| TCGA novel | 728 | A>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1366033070 CA355446682 |
729 | M>T | No |
ClinGen TOPMed |
|
|
CA355446694 rs1446447805 |
731 | M>V | No |
ClinGen gnomAD |
|
|
rs1341164547 CA355446772 |
738 | N>H | No |
ClinGen gnomAD |
|
|
rs746478632 CA2731579 |
740 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1268460808 CA355446807 |
740 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA355446824 rs1320781774 |
742 | A>S | No |
ClinGen TOPMed gnomAD |
|
|
CA355446821 rs1320781774 |
742 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
CA355446855 rs1284831875 |
744 | M>I | No |
ClinGen TOPMed gnomAD |
|
|
CA88889910 rs758395906 |
744 | M>V | No |
ClinGen TOPMed gnomAD |
|
|
rs888199897 CA88889911 |
745 | L>M | No |
ClinGen Ensembl |
|
|
rs1258483475 CA355446869 |
746 | R>G | No |
ClinGen gnomAD |
|
|
COSM209030 rs1458873339 CA355446873 |
746 | R>H | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
CA88889913 rs138324602 |
747 | Q>H | No |
ClinGen ESP |
|
| TCGA novel | 753 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs773139800 CA2731584 |
758 | N>D | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 758 | N>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 761 | M>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA355447087 rs1464813677 |
761 | M>T | No |
ClinGen gnomAD |
|
|
rs762849498 CA2731585 |
761 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs770754864 CA2731586 |
763 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
| TCGA novel | 765 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA355447224 rs1366579837 |
769 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
CA2731606 rs777621020 |
770 | H>R | No |
ClinGen ExAC gnomAD |
|
|
CA88890290 rs768340892 |
770 | H>Y | No |
ClinGen Ensembl |
|
|
CA355447295 rs1577161285 |
775 | T>P | No |
ClinGen Ensembl |
|
|
CA355447319 rs770720324 |
777 | T>P | No |
ClinGen ExAC gnomAD |
|
|
rs770720324 CA2731608 |
777 | T>S | No |
ClinGen ExAC gnomAD |
|
|
rs1264690646 CA355447330 |
778 | L>V | No |
ClinGen gnomAD |
|
|
CA2731611 rs772058033 |
780 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs1268511597 CA355447374 |
781 | Y>C | No |
ClinGen gnomAD |
|
|
CA355447412 rs1420815799 |
784 | D>N | No |
ClinGen gnomAD |
|
|
rs761920819 CA2731614 |
785 | R>G | No |
ClinGen ExAC gnomAD |
|
|
rs773435635 CA2731615 |
785 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA2731613 rs761920819 |
785 | R>W | No |
ClinGen ExAC gnomAD |
|
|
CA2731617 rs374233208 |
788 | M>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1306781056 CA355447457 |
789 | S>R | No |
ClinGen gnomAD |
|
|
CA2731618 rs751880328 |
790 | Q>H | No |
ClinGen ExAC gnomAD |
|
|
CA88890350 rs867704010 |
792 | A>V | No |
ClinGen Ensembl |
|
|
CA2731619 rs114588647 |
793 | V>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs752235543 CA2731621 |
797 | L>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs752235543 CA355447540 |
797 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1449296773 CA355447551 |
798 | T>A | No |
ClinGen TOPMed |
|
|
rs1003199616 CA88890361 |
799 | V>L | No |
ClinGen TOPMed |
|
|
rs1223625377 CA355447575 |
800 | L>V | No |
ClinGen TOPMed |
|
|
rs368226594 CA2731622 |
801 | V>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA2731623 rs138940467 |
804 | L>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA355447660 rs1489238012 |
807 | R>* | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA2731624 rs748905586 |
807 | R>P | No |
ClinGen ExAC gnomAD |
|
|
COSM1042016 rs748905586 CA355447664 |
807 | R>Q | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
rs1182581382 CA355448106 |
810 | I>T | No |
ClinGen gnomAD |
|
|
rs1293943269 CA355448114 |
812 | G>S | No |
ClinGen gnomAD |
|
|
CA355448126 rs1476967303 |
813 | K>N | No |
ClinGen gnomAD |
|
|
CA2731639 rs768020553 |
815 | H>Q | No |
ClinGen ExAC gnomAD |
|
|
rs756693922 CA2731641 |
820 | G>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs753347986 CA2731643 |
822 | V>G | No |
ClinGen ExAC gnomAD |
|
|
rs1277140914 CA355448189 |
823 | A>G | No |
ClinGen gnomAD |
|
|
CA355448197 rs367824247 |
825 | M>L | No |
ClinGen ESP |
|
|
rs1405388739 CA355448201 |
825 | M>T | No |
ClinGen TOPMed |
|
|
CA88890855 rs367824247 |
825 | M>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen ESP NCI-TCGA |
|
CA355448222 rs1318133317 |
828 | R>P | No |
ClinGen gnomAD |
|
|
COSM3392247 CA2731645 rs200846938 |
832 | T>M | pancreas [Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD |
|
CA2731646 rs776690633 |
837 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs758139905 CA355448288 |
838 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2731647 rs758139905 |
838 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA355448307 rs1314871627 |
841 | P>L | No |
ClinGen TOPMed |
|
|
CA88890865 rs894052668 |
842 | V>A | No |
ClinGen TOPMed |
|
|
CA355448328 rs1478911057 |
845 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs1577162000 CA355448374 |
850 | V>G | No |
ClinGen Ensembl |
|
| TCGA novel | 852 | V>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1577162012 CA355448394 |
853 | V>G | No |
ClinGen Ensembl |
|
|
rs1577162025 CA355448405 |
855 | Q>R | No |
ClinGen Ensembl |
|
|
CA355448433 rs1360532400 |
859 | P>R | No |
ClinGen gnomAD |
|
|
CA2731672 rs573597917 |
860 | K>N | No |
ClinGen ExAC gnomAD |
|
|
CA88891012 rs961622914 COSM1042017 |
863 | T>A | Variant assessed as Somatic; impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed |
|
CA355448467 rs1577162077 |
865 | F>V | No |
ClinGen Ensembl |
|
|
rs1802799 CA88891044 |
869 | T>P | No |
ClinGen Ensembl |
|
|
rs1164864097 CA355448504 |
870 | T>N | No |
ClinGen Ensembl |
|
|
CA355448508 rs1240049009 |
871 | P>T | No |
ClinGen gnomAD |
|
|
rs1373097011 CA355448521 |
873 | L>S | No |
ClinGen TOPMed |
|
|
CA2731677 rs772485140 |
873 | L>V | No |
ClinGen ExAC gnomAD |
|
|
rs1577162129 CA355448537 |
875 | A>V | No |
ClinGen Ensembl |
|
|
rs373825034 CA88891073 |
876 | H>Y | No |
ClinGen ESP gnomAD |
|
|
CA2731679 rs761164232 |
877 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1199949088 CA355448568 |
880 | A>V | No |
ClinGen TOPMed |
|
|
rs776951878 CA2731681 |
884 | T>A | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 889 | P>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs762409694 CA2731682 |
889 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1177867718 CA355448633 |
890 | V>D | No |
ClinGen gnomAD |
|
|
CA2731683 rs1553843481 |
891 | T>A | No |
ClinGen Ensembl |
|
|
CA355448640 rs1560197830 |
891 | T>I | No |
ClinGen Ensembl |
|
|
rs1392712443 CA355448646 |
892 | P>L | No |
ClinGen gnomAD |
|
|
CA355448659 rs1329123521 |
895 | E>K | No |
ClinGen gnomAD |
|
|
CA355448667 rs1160918587 |
896 | G>S | No |
ClinGen gnomAD |
|
|
CA2731688 rs533226155 |
899 | I>V | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs754681779 CA2731690 |
901 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2731689 rs563121410 |
901 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA355448722 rs1446707053 |
904 | P>H | No |
ClinGen gnomAD |
|
|
rs112411823 CA2731691 |
905 | N>D | No |
ClinGen ExAC gnomAD |
|
|
rs112411823 CA88891137 |
905 | N>H | No |
ClinGen ExAC gnomAD |
|
|
rs114877343 CA2731692 |
905 | N>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1284457588 CA355448733 |
906 | Y>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
CA2731693 rs756091388 |
906 | Y>H | No |
ClinGen ExAC gnomAD |
|
|
rs1577162265 CA355448746 |
908 | L>F | No |
ClinGen Ensembl |
|
|
CA355448750 rs1283663448 |
908 | L>P | No |
ClinGen gnomAD |
|
|
rs1357408939 CA548795444 |
909 | L>L | No |
ClinGen gnomAD |
No associated diseases with Q13200
4 regional properties for Q13200
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| repeat | Proteasome/cyclosome repeat | 443 - 478 | IPR002015-1 |
| repeat | Proteasome/cyclosome repeat | 480 - 512 | IPR002015-2 |
| domain | RPN1, N-terminal | 56 - 354 | IPR040892 |
| domain | 26S proteasome non-ATPase regulatory subunit RPN1, C-terminal | 853 - 906 | IPR041433 |
13 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytosol | The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. |
| extracellular exosome | A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm. |
| extracellular region | The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. |
| ficolin-1-rich granule lumen | Any membrane-enclosed lumen that is part of a ficolin-1-rich granule. |
| membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
| nucleoplasm | That part of the nuclear content other than the chromosomes or the nucleolus. |
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
| proteasome accessory complex | A protein complex, that caps one or both ends of the proteasome core complex and regulates entry into, or exit from, the proteasome core complex. |
| proteasome complex | A large multisubunit complex which catalyzes protein degradation, found in eukaryotes, archaea and some bacteria. In eukaryotes, this complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core. |
| proteasome regulatory particle | A multisubunit complex, which caps one or both ends of the proteasome core complex. This complex recognizes and unfolds ubiquitinated proteins, and translocates them to the proteasome core complex. |
| proteasome regulatory particle, base subcomplex | The subcomplex of the proteasome regulatory particle that directly associates with the proteasome core complex. |
| proteasome storage granule | An aggregation of proteasome core protease (CP) and regulatory particle (RP) complexes that localizes in the cytoplasm as dot-like structures when cells are in a quiescent state. |
| secretory granule lumen | The volume enclosed by the membrane of a secretory granule. |
1 GO annotations of molecular function
| Name | Definition |
|---|---|
| enzyme regulator activity | Binds to and modulates the activity of an enzyme. |
2 GO annotations of biological process
| Name | Definition |
|---|---|
| proteasome-mediated ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. |
| regulation of protein catabolic process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. |
1 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q8VDM4 | Psmd2 | 26S proteasome non-ATPase regulatory subunit 2 | Mus musculus (Mouse) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MEEGGRDKAP | VQPQQSPAAA | PGGTDEKPSG | KERRDAGDKD | KEQELSEEDK | QLQDELEMLV |
| 70 | 80 | 90 | 100 | 110 | 120 |
| ERLGEKDTSL | YRPALEELRR | QIRSSTTSMT | SVPKPLKFLR | PHYGKLKEIY | ENMAPGENKR |
| 130 | 140 | 150 | 160 | 170 | 180 |
| FAADIISVLA | MTMSGERECL | KYRLVGSQEE | LASWGHEYVR | HLAGEVAKEW | QELDDAEKVQ |
| 190 | 200 | 210 | 220 | 230 | 240 |
| REPLLTLVKE | IVPYNMAHNA | EHEACDLLME | IEQVDMLEKD | IDENAYAKVC | LYLTSCVNYV |
| 250 | 260 | 270 | 280 | 290 | 300 |
| PEPENSALLR | CALGVFRKFS | RFPEALRLAL | MLNDMELVED | IFTSCKDVVV | QKQMAFMLGR |
| 310 | 320 | 330 | 340 | 350 | 360 |
| HGVFLELSED | VEEYEDLTEI | MSNVQLNSNF | LALARELDIM | EPKVPDDIYK | THLENNRFGG |
| 370 | 380 | 390 | 400 | 410 | 420 |
| SGSQVDSARM | NLASSFVNGF | VNAAFGQDKL | LTDDGNKWLY | KNKDHGMLSA | AASLGMILLW |
| 430 | 440 | 450 | 460 | 470 | 480 |
| DVDGGLTQID | KYLYSSEDYI | KSGALLACGI | VNSGVRNECD | PALALLSDYV | LHNSNTMRLG |
| 490 | 500 | 510 | 520 | 530 | 540 |
| SIFGLGLAYA | GSNREDVLTL | LLPVMGDSKS | SMEVAGVTAL | ACGMIAVGSC | NGDVTSTILQ |
| 550 | 560 | 570 | 580 | 590 | 600 |
| TIMEKSETEL | KDTYARWLPL | GLGLNHLGKG | EAIEAILAAL | EVVSEPFRSF | ANTLVDVCAY |
| 610 | 620 | 630 | 640 | 650 | 660 |
| AGSGNVLKVQ | QLLHICSEHF | DSKEKEEDKD | KKEKKDKDKK | EAPADMGAHQ | GVAVLGIALI |
| 670 | 680 | 690 | 700 | 710 | 720 |
| AMGEEIGAEM | ALRTFGHLLR | YGEPTLRRAV | PLALALISVS | NPRLNILDTL | SKFSHDADPE |
| 730 | 740 | 750 | 760 | 770 | 780 |
| VSYNSIFAMG | MVGSGTNNAR | LAAMLRQLAQ | YHAKDPNNLF | MVRLAQGLTH | LGKGTLTLCP |
| 790 | 800 | 810 | 820 | 830 | 840 |
| YHSDRQLMSQ | VAVAGLLTVL | VSFLDVRNII | LGKSHYVLYG | LVAAMQPRML | VTFDEELRPL |
| 850 | 860 | 870 | 880 | 890 | 900 |
| PVSVRVGQAV | DVVGQAGKPK | TITGFQTHTT | PVLLAHGERA | ELATEEFLPV | TPILEGFVIL |
| RKNPNYDL |