P78324
Gene name |
SIRPA (BIT, MFR, MYD1, PTPNS1, SHPS1, SIRP) |
Protein name |
Tyrosine-protein phosphatase non-receptor type substrate 1 |
Names |
|
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:140885 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
15 structures for P78324
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| 2JJS | X-ray | 185 A | A/B | 31-149 | PDB |
| 2JJT | X-ray | 230 A | A/B | 31-149 | PDB |
| 2UV3 | X-ray | 180 A | A/B | 31-149 | PDB |
| 2WNG | X-ray | 249 A | A | 31-350 | PDB |
| 4CMM | X-ray | 192 A | A | 31-149 | PDB |
| 6BIT | X-ray | 219 A | G/H | 31-147 | PDB |
| 6NMR | X-ray | 242 A | E/I/M/S | 31-149 | PDB |
| 6NMS | X-ray | 211 A | C/S | 31-149 | PDB |
| 6NMT | X-ray | 183 A | C | 31-149 | PDB |
| 6NMU | X-ray | 255 A | C/S | 31-149 | PDB |
| 6NMV | X-ray | 261 A | S | 31-149 | PDB |
| 7KPG | X-ray | 227 A | S | 33-147 | PDB |
| 7ST5 | X-ray | 220 A | A/F | 31-149 | PDB |
| 7YGG | X-ray | 276 A | A/B | 31-171 | PDB |
| AF-P78324-F1 | Predicted | AlphaFoldDB |
491 variants for P78324
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
CA408001591 rs1312698186 |
2 | E>D | No |
ClinGen TOPMed |
|
|
CA408001594 rs1260136939 |
3 | P>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1356963795 CA408001600 |
4 | A>S | No |
ClinGen TOPMed gnomAD |
|
|
CA408001598 rs1356963795 |
4 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
rs1292048669 CA408001608 |
5 | G>A | No |
ClinGen gnomAD |
|
|
rs1210518049 CA408001605 |
5 | G>S | No |
ClinGen gnomAD |
|
|
CA408001609 rs1292048669 |
5 | G>V | No |
ClinGen gnomAD |
|
|
rs1198921779 CA408001614 |
6 | P>R | No |
ClinGen gnomAD |
|
| VAR_015462 | 6 | P>RS | No | UniProt | |
|
rs755781590 CA310835503 |
7 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1001882194 CA310835505 |
8 | P>L | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 8 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1458812035 CA408001645 |
12 | G>R | No |
ClinGen TOPMed gnomAD |
|
| VAR_015463 | 20 | A>P | No | UniProt | |
|
rs555038801 CA9729679 |
27 | G>E | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA310849690 rs867616851 |
29 | A>S | No |
ClinGen Ensembl |
|
|
CA310849701 rs573686249 |
29 | A>V | No |
ClinGen 1000Genomes gnomAD |
|
|
rs768204721 CA9729682 |
31 | E>G | No |
ClinGen ExAC gnomAD |
|
|
rs754109100 CA9729686 |
32 | E>D | No |
ClinGen ExAC |
|
|
CA9729684 rs756630350 |
32 | E>G | No |
ClinGen ExAC gnomAD |
|
|
CA9729685 rs756630350 |
32 | E>V | No |
ClinGen ExAC gnomAD |
|
|
rs755247899 CA9729687 |
33 | E>G | No |
ClinGen ExAC gnomAD |
|
|
rs1405279962 CA408001801 |
35 | Q>R | No |
ClinGen gnomAD |
|
|
CA9729688 rs778976139 |
36 | V>G | No |
ClinGen ExAC gnomAD |
|
|
rs1367486973 CA408001811 |
37 | I>V | No |
ClinGen TOPMed gnomAD |
|
|
CA408001823 rs1380579047 |
38 | Q>H | No |
ClinGen TOPMed gnomAD |
|
|
CA408001838 CA408001837 VAR_015464 rs1349896458 |
40 | D>E | No |
ClinGen UniProt TOPMed dbSNP gnomAD |
|
|
rs1295193905 CA408001831 |
40 | D>N | No |
ClinGen gnomAD |
|
|
rs1312987697 CA408001834 |
40 | D>V | No |
ClinGen gnomAD |
|
|
rs748264325 CA9729689 |
41 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1323485349 CA408001852 |
43 | V>M | No |
ClinGen gnomAD |
|
|
CA408001863 rs146490405 |
44 | L>F | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs386811660 CA310849801 |
44 | L>S | No |
ClinGen Ensembl |
|
|
VAR_015465 rs143735290 CA9729692 |
44 | L>S | No |
ClinGen UniProt 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
|
CA9729696 rs775380062 |
46 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9729695 rs775380062 |
46 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9729697 rs768395547 |
46 | A>V | No |
ClinGen ExAC |
|
|
CA9729701 rs767147511 |
47 | A>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9729699 rs761467146 |
47 | A>S | No |
ClinGen ExAC |
|
|
CA9729700 rs767147511 |
47 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9729703 rs766744865 |
48 | G>A | No |
ClinGen ExAC |
|
|
CA408001880 rs766744865 |
48 | G>E | No |
ClinGen ExAC |
|
|
CA9729706 rs765505924 |
49 | E>A | No |
ClinGen ExAC gnomAD |
|
|
rs758551564 CA9729709 CA9729708 |
49 | E>D | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs755263241 CA9729705 |
49 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9729707 rs765505924 |
49 | E>V | No |
ClinGen ExAC gnomAD |
|
|
CA408001885 rs17855609 |
50 | T>A | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA9729711 rs756128180 |
50 | T>I | No |
ClinGen ExAC gnomAD |
|
|
CA9729710 VAR_015466 rs17855609 |
50 | T>S | No |
ClinGen UniProt 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
|
CA310849945 rs796540290 |
50 | T>S | No |
ClinGen Ensembl |
|
|
CA9729716 rs747805113 |
51 | A>D | No |
ClinGen ExAC gnomAD |
|
|
CA9729715 rs768322199 |
51 | A>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs768322199 CA9729714 |
51 | A>T | No |
ClinGen ExAC gnomAD |
|
|
CA408001890 rs747805113 |
51 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs772867783 CA9729718 |
52 | T>A | No |
ClinGen ExAC gnomAD |
|
|
VAR_015468 CA9729720 rs17855610 |
52 | T>I | No |
ClinGen UniProt 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
|
rs772867783 CA9729719 |
52 | T>P | No |
ClinGen ExAC gnomAD |
|
|
CA408001893 rs17855610 |
52 | T>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs776996791 CA9729723 |
53 | L>M | No |
ClinGen ExAC gnomAD |
|
|
rs776996791 CA408001894 |
53 | L>V | No |
ClinGen ExAC gnomAD |
|
|
CA408001898 rs758642581 |
54 | R>C | No |
ClinGen ExAC gnomAD |
|
|
CA9729728 rs758642581 |
54 | R>G | No |
ClinGen ExAC gnomAD |
|
|
CA9729729 VAR_015470 rs17855611 |
54 | R>H | No |
ClinGen UniProt 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
|
rs17855611 CA9729730 |
54 | R>P | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA9729727 rs758642581 |
54 | R>S | No |
ClinGen ExAC gnomAD |
|
|
rs778881054 CA9729735 |
55 | C>* | No |
ClinGen ExAC gnomAD |
|
|
rs754894636 CA9729733 |
55 | C>F | No |
ClinGen ExAC gnomAD |
|
|
rs780096272 CA9729731 |
55 | C>G | No |
ClinGen ExAC gnomAD |
|
|
rs780096272 CA9729732 |
55 | C>R | No |
ClinGen ExAC gnomAD |
|
|
rs780096272 CA408001900 |
55 | C>S | No |
ClinGen ExAC gnomAD |
|
|
rs778881054 CA408001903 |
55 | C>W | No |
ClinGen ExAC gnomAD |
|
|
rs754894636 CA408001901 |
55 | C>Y | No |
ClinGen ExAC gnomAD |
|
|
rs772964158 CA9729738 |
56 | T>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs772964158 CA9729737 |
56 | T>N | No |
ClinGen ExAC gnomAD |
|
|
rs771896459 CA9729736 |
56 | T>P | No |
ClinGen ExAC |
|
|
CA408001909 rs17855612 |
57 | A>E | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs776144552 CA9729741 |
57 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs776144552 CA9729742 |
57 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
VAR_015471 CA9729743 rs17855612 |
57 | A>V | No |
ClinGen UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs764367971 CA9729749 |
58 | T>I | No |
ClinGen ExAC |
|
|
rs764367971 CA9729747 |
58 | T>N | No |
ClinGen ExAC |
|
|
rs764367971 CA9729748 |
58 | T>S | No |
ClinGen ExAC |
|
|
rs763275466 CA9729746 |
58 | T>S | No |
ClinGen ExAC |
|
|
rs767499863 CA408001915 |
59 | S>F | No |
ClinGen ExAC gnomAD |
|
|
rs767499863 CA9729750 |
59 | S>Y | No |
ClinGen ExAC gnomAD |
|
|
rs778969033 CA9729753 |
61 | I>L | No |
ClinGen ExAC gnomAD |
|
|
rs1371837011 VAR_015472 CA408001925 |
61 | I>N | No |
ClinGen UniProt dbSNP gnomAD |
|
|
rs1334752212 CA408001944 |
64 | G>A | No |
ClinGen TOPMed |
|
| TCGA novel | 64 | G>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA9729754 rs752578636 |
65 | P>S | No |
ClinGen ExAC gnomAD |
|
|
CA408001964 rs1314024858 |
67 | Q>H | No |
ClinGen gnomAD |
|
| VAR_015473 | 68 | W>R | No | UniProt | |
|
CA9729755 rs758259237 |
70 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9729756 rs571746929 |
70 | R>T | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs143351148 CA9729759 |
72 | A>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9729758 rs143351148 |
72 | A>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9729760 rs539268857 |
74 | P>A | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA310850178 rs539268857 |
74 | P>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA9729761 VAR_015474 rs1057114 |
75 | G>A | No |
ClinGen UniProt 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
|
CA408002012 rs1057114 |
75 | G>D | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA408002014 rs1370042282 |
76 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA9729762 rs775972376 |
76 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1182420620 CA408002017 VAR_015475 |
77 | E>K | No |
ClinGen UniProt dbSNP gnomAD |
|
|
CA408002038 rs1446582576 |
79 | I>M | No |
ClinGen TOPMed gnomAD |
|
| VAR_015477 | 81 | N>H | No | UniProt | |
|
CA408002081 rs1250110733 |
85 | G>S | No |
ClinGen TOPMed |
|
| TCGA novel | 89 | R>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1441903737 CA408002109 |
89 | R>P | No |
ClinGen TOPMed gnomAD |
|
|
rs1441903737 CA408002108 |
89 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA9729765 rs140361473 |
89 | R>W | No |
ClinGen ESP ExAC gnomAD |
|
|
rs767728473 CA9729767 |
90 | V>I | No |
ClinGen ExAC gnomAD |
|
|
rs1296766988 CA408002117 |
91 | T>A | No |
ClinGen gnomAD |
|
|
CA408002133 rs1342463990 |
93 | V>G | No |
ClinGen gnomAD |
|
|
CA9729771 CA310850238 VAR_015478 rs138283486 |
95 | D>E | No |
ClinGen UniProt 1000Genomes ExAC TOPMed dbSNP |
|
|
CA310850224 rs386811661 |
95 | D>ES | No |
ClinGen Ensembl |
|
|
rs149634649 CA310850246 |
96 | L>F | No |
ClinGen 1000Genomes TOPMed gnomAD |
|
|
rs146163282 CA310850247 |
96 | L>H | No |
ClinGen 1000Genomes TOPMed |
|
|
rs149634649 CA408002146 |
96 | L>I | No |
ClinGen 1000Genomes TOPMed gnomAD |
|
|
rs146163282 CA310850248 |
96 | L>P | No |
ClinGen 1000Genomes TOPMed |
|
|
rs146163282 CA408002148 |
96 | L>R | No |
ClinGen 1000Genomes TOPMed |
|
| VAR_015479 | 96 | L>S | No | UniProt | |
|
rs752664719 CA9729773 |
97 | T>I | No |
ClinGen ExAC |
|
|
CA408002161 rs1210545251 |
98 | K>N | No |
ClinGen gnomAD |
|
| TCGA novel | 99 | R>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs17855613 CA9729774 |
100 | N>D | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA310850273 VAR_015480 rs386811662 |
100 | N>E | requires 2 nucleotide substitutions [UniProt] | No |
ClinGen UniProt Ensembl dbSNP |
|
rs1403798207 CA408002173 |
100 | N>I | No |
ClinGen TOPMed |
|
|
rs17855614 CA9729775 |
100 | N>K | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs754641900 CA310850301 |
102 | M>I | No |
ClinGen gnomAD |
|
|
rs142085206 CA9729777 |
102 | M>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA408002186 rs1384642105 |
102 | M>T | No |
ClinGen gnomAD |
|
|
rs142085206 CA9729776 |
102 | M>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA408002194 rs1471635352 |
103 | D>V | No |
ClinGen TOPMed gnomAD |
|
|
rs780866974 CA9729778 |
106 | I>M | No |
ClinGen ExAC gnomAD |
|
|
CA9729780 rs17855615 |
107 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA408002217 rs17855615 |
107 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
VAR_015483 rs17855615 CA9729779 |
107 | R>S | No |
ClinGen UniProt ExAC TOPMed dbSNP gnomAD |
|
|
CA408002222 rs1409816206 |
108 | I>V | No |
ClinGen gnomAD |
|
|
rs17855616 CA408002229 |
109 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9729782 rs17855616 VAR_015484 |
109 | G>S | No |
ClinGen UniProt ExAC TOPMed dbSNP gnomAD |
|
|
rs555869067 CA9729784 |
110 | N>K | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs200920826 CA9729783 |
110 | N>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 111 | I>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA9729787 rs773474735 |
114 | A>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA408002258 rs1432266948 |
114 | A>T | No |
ClinGen gnomAD |
|
|
CA9729789 rs766576360 |
116 | A>G | No |
ClinGen ExAC gnomAD |
|
|
CA408002275 rs766576360 |
116 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA408002278 rs1203000287 |
117 | G>D | No |
ClinGen gnomAD |
|
|
rs377556462 CA9729791 |
117 | G>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs138711836 CA9729793 |
118 | T>I | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA408002291 rs1240577393 |
119 | Y>C | No |
ClinGen gnomAD |
|
| TCGA novel | 123 | K>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs767136065 VAR_015485 CA9729795 |
125 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen UniProt ExAC NCI-TCGA dbSNP gnomAD |
|
rs750090514 CA9729796 |
126 | K>T | No |
ClinGen ExAC |
|
|
CA9729800 rs755486043 |
127 | G>E | No |
ClinGen ExAC gnomAD |
|
|
rs779570157 CA9729799 |
127 | G>R | No |
ClinGen ExAC |
|
|
CA9729798 rs779570157 |
127 | G>W | No |
ClinGen ExAC |
|
|
rs748524423 CA9729802 |
128 | S>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs772467858 CA9729803 |
129 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA |
|
COSM315199 rs771231945 CA408002361 |
130 | D>A | lung [Cosmic] | No |
ClinGen cosmic curated ExAC |
|
CA9729806 rs747269909 |
130 | D>N | No |
ClinGen ExAC gnomAD |
|
|
rs771231945 CA9729807 |
130 | D>V | No |
ClinGen ExAC |
|
|
CA310850462 rs201761690 |
131 | D>N | No |
ClinGen Ensembl |
|
|
CA9729811 rs114499682 |
132 | V>A | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs115287948 CA408002372 |
132 | V>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs115287948 CA9729810 |
132 | V>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs386811663 CA310850497 VAR_015486 |
132 | V>T | requires 2 nucleotide substitutions [UniProt] | No |
ClinGen UniProt Ensembl dbSNP |
|
CA408002378 rs1555771059 |
133 | E>* | No |
ClinGen Ensembl |
|
|
CA408002376 rs1555771059 |
133 | E>K | No |
ClinGen Ensembl |
|
| VAR_015487 | 134 | F>L | No | UniProt | |
|
rs1237114618 CA408002393 |
135 | K>E | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 136 | S>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA9729814 rs750177982 |
138 | A>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs755783426 CA9729815 |
140 | T>S | No |
ClinGen ExAC gnomAD |
|
|
CA310850523 rs371173447 |
141 | E>D | No |
ClinGen ESP TOPMed gnomAD |
|
|
CA408002435 rs1271295016 |
142 | L>M | No |
ClinGen gnomAD |
|
| TCGA novel | 142 | L>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 144 | V>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA9729818 rs754503197 |
145 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
COSM3785350 CA9729819 COSM3785351 rs779342446 |
145 | R>H | pancreas Variant assessed as Somatic; 0.0001392 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA9729821 rs561231326 |
146 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
CA408003572 rs1398411571 |
146 | A>V | No |
ClinGen gnomAD |
|
|
rs1600434224 CA408003588 |
147 | K>N | No |
ClinGen Ensembl |
|
|
rs1389441258 CA408003582 |
147 | K>T | No |
ClinGen gnomAD |
|
|
CA408003611 rs1328169498 |
149 | S>C | No |
ClinGen gnomAD |
|
| TCGA novel | 149 | S>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA9729835 rs143335460 |
152 | V>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs143335460 CA9729836 |
152 | V>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs370744062 CA9729837 |
154 | S>L | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 156 | P>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA9729839 rs532628857 |
157 | A>E | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA9729840 rs532628857 |
157 | A>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA9729842 rs148378409 |
158 | A>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1024315516 CA310855635 |
160 | A>S | No |
ClinGen TOPMed |
|
|
CA9729844 rs141549443 |
160 | A>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| VAR_015488 | 163 | Q>D | requires 2 nucleotide substitutions [UniProt] | No | UniProt |
|
rs202077577 CA310855666 |
163 | Q>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
CA310855674 rs970024482 |
165 | T>A | No |
ClinGen TOPMed gnomAD |
|
|
rs1170772172 CA408003833 |
168 | F>L | No |
ClinGen gnomAD |
|
|
CA9729847 rs769868568 |
169 | T>I | No |
ClinGen ExAC gnomAD |
|
|
rs746107736 CA9729846 |
169 | T>S | No |
ClinGen ExAC gnomAD |
|
|
rs749303552 CA9729849 |
171 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA408003895 rs1238711335 |
172 | S>C | No |
ClinGen TOPMed |
|
|
rs139476824 CA9729852 |
174 | G>C | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs139476824 CA9729851 |
174 | G>S | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 175 | F>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA408003944 rs1380729558 |
176 | S>L | No |
ClinGen gnomAD |
|
|
CA9729853 rs770721545 |
178 | R>G | No |
ClinGen ExAC gnomAD |
|
|
CA408003964 rs1296642085 |
178 | R>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
| TCGA novel | 180 | I>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA310855751 rs913702063 |
180 | I>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs1225714969 CA408004002 |
181 | T>N | No |
ClinGen gnomAD |
|
| VAR_015489 | 181 | T>S | No | UniProt | |
|
CA408004009 rs1344297150 |
182 | L>V | No |
ClinGen TOPMed |
|
|
rs1323601039 CA408004017 |
183 | K>Q | No |
ClinGen TOPMed |
|
|
CA9729854 rs776219453 |
183 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 184 | W>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs764778039 CA9729856 |
185 | F>L | No |
ClinGen ExAC gnomAD |
|
|
rs752293944 CA9729857 |
186 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 187 | N>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs200439865 CA408004092 |
188 | G>E | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs200439865 CA9729858 |
188 | G>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1157839332 CA408004091 |
188 | G>W | No |
ClinGen TOPMed |
|
|
CA9729859 rs764759187 |
189 | N>H | No |
ClinGen ExAC gnomAD |
|
|
CA408004098 rs1263418811 |
189 | N>S | No |
ClinGen gnomAD |
|
|
CA408004095 rs764759187 |
189 | N>Y | No |
ClinGen ExAC gnomAD |
|
|
CA408004107 rs142746467 |
190 | E>D | No |
ClinGen ESP |
|
| VAR_015490 | 190 | E>Q | No | UniProt | |
|
CA9729860 rs752127082 |
192 | S>P | No |
ClinGen ExAC gnomAD |
|
|
rs757772647 CA9729861 |
194 | F>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9729862 rs768027007 |
196 | T>S | No |
ClinGen ExAC gnomAD |
|
|
rs367635507 CA9729864 |
197 | N>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA310855831 rs191126675 |
198 | V>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs191126675 CA9729865 |
198 | V>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs947569263 CA310855834 |
199 | D>N | No |
ClinGen Ensembl |
|
|
CA9729866 rs749450960 |
200 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs746950408 CA9729869 |
201 | V>A | No |
ClinGen ExAC TOPMed gnomAD |
|
| VAR_015491 | 201 | V>AR | No | UniProt | |
|
RCV000887181 rs115894672 CA9729868 |
201 | V>I | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs1177898369 CA408004187 |
203 | E>D | No |
ClinGen TOPMed gnomAD |
|
|
CA408004190 rs1568505952 |
204 | S>G | No |
ClinGen Ensembl |
|
|
CA9729872 rs183144771 CA9729871 |
204 | S>R | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs556014813 CA9729873 |
205 | V>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA408004207 rs1437968385 |
207 | Y>H | No |
ClinGen TOPMed |
|
|
rs1600435061 CA408004211 |
207 | Y>S | No |
ClinGen Ensembl |
|
|
CA310855870 rs888745506 |
208 | S>N | No |
ClinGen TOPMed gnomAD |
|
|
rs1225722948 CA408004227 |
209 | I>M | No |
ClinGen gnomAD |
|
|
CA9729874 rs774996103 |
210 | H>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1215901087 CA408004248 |
212 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
rs188077907 RCV000882878 CA9729877 |
213 | A>T | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
| VAR_015492 | 214 | K>N | No | UniProt | |
|
CA310855887 rs199532889 |
216 | V>M | No |
ClinGen 1000Genomes |
|
|
CA9729879 rs767886843 |
219 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9729880 rs140075472 |
219 | R>H | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
| VAR_015493 | 220 | E>G | No | UniProt | |
|
CA9729882 rs201193311 |
220 | E>K | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 221 | D>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
VAR_015494 rs143385810 COSM443508 CA9729884 |
222 | V>I | Variant assessed as Somatic; 0.0 impact. breast [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated UniProt ESP ExAC NCI-TCGA TOPMed dbSNP gnomAD |
|
rs143385810 CA310855928 |
222 | V>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA408004322 rs1322463841 |
225 | Q>E | No |
ClinGen TOPMed |
|
|
rs1347077090 CA408004337 |
227 | I>F | No |
ClinGen gnomAD |
|
|
COSM1647367 CA9729887 rs200513155 COSM723498 |
230 | V>M | lung urinary_tract prostate [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC gnomAD |
|
rs745737488 CA9729889 |
232 | H>Y | No |
ClinGen ExAC gnomAD |
|
|
rs199733185 COSM723497 CA9729891 COSM1647366 |
233 | V>I | lung kidney prostate [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
rs748980816 CA9729892 |
234 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs748980816 CA9729893 |
234 | T>S | No |
ClinGen ExAC TOPMed gnomAD |
|
| VAR_015495 | 236 | Q>R | No | UniProt | |
| TCGA novel | 238 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA408004418 rs1600435474 |
239 | P>L | No |
ClinGen Ensembl |
|
|
rs761374773 CA9729895 |
239 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
| VAR_015496 | 239 | P>SF | No | UniProt | |
|
CA310856017 rs369093228 |
241 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP NCI-TCGA TOPMed gnomAD |
| TCGA novel | 242 | G>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1358873982 CA408004446 |
244 | A>G | No |
ClinGen TOPMed |
|
|
CA310856032 rs761181759 |
245 | N>D | No |
ClinGen ExAC gnomAD |
|
|
CA9729898 rs761181759 |
245 | N>H | No |
ClinGen ExAC gnomAD |
|
|
CA9729899 rs140418541 |
249 | T>A | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA9729900 rs373611629 |
250 | I>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA408004486 rs1335057162 |
251 | R>* | No |
ClinGen gnomAD |
|
|
VAR_015497 rs377448893 CA9729901 |
251 | R>Q | No |
ClinGen UniProt ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs1331379264 CA408004510 |
253 | P>Q | No |
ClinGen gnomAD |
|
|
rs751609627 CA9729924 |
253 | P>T | No |
ClinGen ExAC |
|
|
rs1270564763 CA408004520 |
255 | T>A | No |
ClinGen gnomAD |
|
|
rs1306879912 CA408004523 |
255 | T>I | No |
ClinGen gnomAD |
|
|
rs1270564763 CA408004521 |
255 | T>S | No |
ClinGen gnomAD |
|
| VAR_015498 | 261 | Q>L | No | UniProt | |
|
CA408004563 rs1428530571 |
261 | Q>P | No |
ClinGen TOPMed |
|
|
CA408004578 rs1237129974 |
263 | V>G | No |
ClinGen gnomAD |
|
|
VAR_015499 rs754806675 CA9729928 |
263 | V>M | No |
ClinGen UniProt ExAC dbSNP gnomAD |
|
|
rs1475834892 CA408004601 |
267 | N>D | No |
ClinGen gnomAD |
|
|
CA408004614 rs1188686874 |
268 | Q>H | No |
ClinGen gnomAD |
|
|
rs1417859969 CA408004626 |
270 | N>S | No |
ClinGen gnomAD |
|
|
CA408004634 rs1465413794 |
271 | V>A | No |
ClinGen gnomAD |
|
| VAR_015500 | 271 | V>I | No | UniProt | |
|
CA9729929 rs778793021 |
275 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
| VAR_015501 | 276 | R>T | No | UniProt | |
|
CA9729931 rs771711753 |
277 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs777166825 CA9729932 |
281 | Q>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA408004711 rs1432410417 |
282 | R>S | No |
ClinGen TOPMed gnomAD |
|
|
rs746503962 CA9729933 |
286 | T>S | No |
ClinGen ExAC gnomAD |
|
|
rs370831282 CA9729937 |
291 | G>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs764356789 CA9729940 |
293 | V>E | No |
ClinGen ExAC gnomAD |
|
|
rs151006495 CA9729939 |
293 | V>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9729944 rs753839133 |
295 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs2422665 CA9729942 |
295 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA310856601 rs141989867 |
296 | T>A | No |
ClinGen ESP TOPMed gnomAD |
|
|
rs558867758 CA9729945 |
296 | T>I | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA408004882 rs558867758 |
296 | T>K | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs558867758 CA9729946 |
296 | T>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1021538813 CA310856620 |
298 | T>M | No |
ClinGen TOPMed gnomAD |
|
|
CA9729949 rs777448693 |
301 | T>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1403539600 CA408004946 |
301 | T>I | No |
ClinGen TOPMed |
|
|
rs2422666 CA9729952 |
302 | V>F | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9729951 rs2422666 COSM72648 |
302 | V>I | ovary Variant assessed as Somatic; 0.0 impact. endometrium [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA310856645 VAR_015502 rs2422666 |
302 | V>L | No |
ClinGen UniProt ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA9729953 rs746410414 |
303 | T>I | No |
ClinGen ExAC gnomAD |
|
|
CA9729955 rs2422667 |
304 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA408004986 rs1232487890 |
305 | N>S | No |
ClinGen gnomAD |
|
| TCGA novel | 306 | K>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA310856670 rs1032208389 |
307 | D>G | No |
ClinGen Ensembl |
|
|
CA9729956 rs368100826 |
310 | Y>H | No |
ClinGen ESP ExAC gnomAD |
|
|
rs768829349 CA9729957 |
311 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs768829349 CA9729958 |
311 | N>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs761882921 CA9729959 |
312 | W>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs976892281 CA310856699 |
313 | M>I | No |
ClinGen TOPMed |
|
|
rs1252632302 CA408005095 |
313 | M>L | No |
ClinGen TOPMed |
|
|
rs767709533 CA9729960 |
314 | S>R | No |
ClinGen ExAC gnomAD |
|
|
rs765241332 CA9729963 |
323 | H>R | No |
ClinGen ExAC gnomAD |
|
|
rs370533198 CA9729964 |
324 | R>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 324 | R>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA310856769 rs199583931 |
328 | K>R | No |
ClinGen 1000Genomes |
|
|
CA9729966 rs763740975 |
330 | T>P | No |
ClinGen ExAC gnomAD |
|
|
CA408005302 rs1568507131 |
332 | Q>H | No |
ClinGen Ensembl |
|
|
CA9729968 rs756864389 |
332 | Q>R | No |
ClinGen ExAC |
|
|
CA408005306 rs1156236080 |
333 | V>L | No |
ClinGen gnomAD |
|
|
CA408005304 rs1156236080 |
333 | V>M | No |
ClinGen gnomAD |
|
|
rs756656814 CA9729971 |
337 | G>R | No |
ClinGen ExAC gnomAD |
|
|
CA408005339 rs1363533702 |
338 | Q>K | No |
ClinGen gnomAD |
|
|
rs1329535913 CA408005347 |
339 | P>A | No |
ClinGen gnomAD |
|
| VAR_015503 | 339 | P>S | No | UniProt | |
| TCGA novel | 340 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
COSM1649861 COSM576692 rs1433660920 CA408005358 |
340 | A>V | lung Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA TOPMed |
|
CA310856827 rs1017124411 |
341 | V>F | No |
ClinGen TOPMed |
|
|
rs200179222 CA9729974 RCV000883105 |
342 | S>T | No |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA408005382 rs1158059336 |
344 | S>N | No |
ClinGen TOPMed |
|
|
rs1600437796 CA408005398 |
346 | D>A | No |
ClinGen Ensembl |
|
|
rs1307115722 CA408005395 |
346 | D>N | No |
ClinGen gnomAD |
|
|
CA9729978 rs773473733 |
349 | V>F | No |
ClinGen ExAC gnomAD |
|
|
rs1600437854 CA408005422 |
350 | S>A | No |
ClinGen Ensembl |
|
|
rs1440005516 CA408005436 |
352 | H>P | No |
ClinGen gnomAD |
|
|
rs769916724 CA9729980 |
352 | H>Q | No |
ClinGen ExAC gnomAD |
|
|
CA408005435 rs1251879296 |
352 | H>Y | No |
ClinGen gnomAD |
|
|
rs138876160 VAR_015504 CA9729981 |
353 | P>L | No |
ClinGen UniProt ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs138876160 CA9729982 |
353 | P>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9729984 rs751263972 |
354 | K>E | No |
ClinGen ExAC gnomAD |
|
|
rs371795489 CA9729985 |
354 | K>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1331716018 CA408005460 |
356 | Q>E | No |
ClinGen gnomAD |
|
|
rs1600437937 CA408005462 |
356 | Q>R | No |
ClinGen Ensembl |
|
|
rs1200233096 VAR_015505 CA408005466 |
357 | G>S | No |
ClinGen UniProt TOPMed dbSNP |
|
|
CA408005475 rs1168223572 |
358 | S>* | No |
ClinGen gnomAD |
|
|
rs74625621 CA9729987 |
360 | T>P | No |
ClinGen ExAC gnomAD |
|
|
rs981667353 CA310856878 |
361 | A>S | No |
ClinGen TOPMed gnomAD |
|
|
rs981667353 CA408005491 |
361 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA9729991 rs755396026 |
362 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
| rs753235283 | 363 | E>= | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA408005518 rs1324824296 |
363 | E>A | No |
ClinGen gnomAD |
|
|
CA310858419 rs1018011271 |
364 | N>S | No |
ClinGen TOPMed gnomAD |
|
| VAR_015506 | 367 | S>P | No | UniProt | |
|
CA9730013 rs375872863 |
369 | E>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1410245745 CA408005558 |
369 | E>G | No |
ClinGen TOPMed |
|
|
CA9730015 VAR_015507 rs778218860 |
370 | R>Q | No |
ClinGen UniProt ExAC TOPMed dbSNP gnomAD |
|
|
rs200858478 CA9730014 |
370 | R>W | Variant assessed as Somatic; 0.0001848 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs771010369 CA9730017 |
371 | N>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9730018 rs181742590 |
372 | I>F | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs368720222 CA9730019 |
374 | I>M | No |
ClinGen ESP TOPMed gnomAD |
|
| TCGA novel | 377 | G>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 379 | V>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA310858487 rs12624995 |
379 | V>G | No |
ClinGen Ensembl |
|
|
rs1376041755 CA408005638 |
382 | L>S | No |
ClinGen gnomAD |
|
| TCGA novel | 385 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA408005657 rs1170284788 |
385 | A>V | No |
ClinGen gnomAD |
|
| VAR_015508 | 389 | A>E | No | UniProt | |
|
CA310858518 rs112407891 |
389 | A>P | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9730023 rs112407891 |
389 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9730024 rs748023319 |
389 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA310858530 rs146048438 |
390 | A>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9730026 rs146048438 |
390 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs765921966 CA9730028 |
393 | L>F | No |
ClinGen ExAC gnomAD |
|
|
CA408005706 rs1487072320 |
394 | V>A | No |
ClinGen gnomAD |
|
|
rs140079423 CA9730030 |
394 | V>I | No |
ClinGen ESP ExAC gnomAD |
|
|
CA9730031 rs765828306 |
395 | R>* | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA9730051 rs763605516 |
401 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs1600449368 CA407999577 |
402 | Q>E | No |
ClinGen Ensembl |
|
|
COSM379678 CA407999594 rs1568510825 |
403 | G>C | lung [Cosmic] | No |
ClinGen cosmic curated Ensembl |
|
CA310792716 rs941843579 |
403 | G>D | No |
ClinGen TOPMed |
|
|
CA407999599 rs941843579 |
403 | G>V | No |
ClinGen TOPMed |
|
|
rs1349834945 CA407999611 |
404 | S>F | No |
ClinGen gnomAD |
|
|
CA9730052 rs764665145 |
405 | T>S | No |
ClinGen ExAC gnomAD |
|
|
CA407999631 rs1374088454 |
406 | S>F | No |
ClinGen gnomAD |
|
|
CA407999645 rs1445393851 |
407 | S>C | No |
ClinGen gnomAD |
|
|
CA9730054 rs757552603 |
408 | T>A | Variant assessed as Somatic; 4.619e-05 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA9730087 rs141454528 |
414 | E>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1401634189 CA408000080 |
417 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
rs1486310769 CA408000086 |
418 | R>G | No |
ClinGen Ensembl |
|
|
CA9730088 rs745645458 |
419 | E>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs955216012 CA310796402 |
420 | I>T | No |
ClinGen TOPMed gnomAD |
|
|
rs769637747 CA9730089 |
420 | I>V | No |
ClinGen ExAC gnomAD |
|
|
rs779843288 CA9730090 |
421 | T>I | No |
ClinGen ExAC gnomAD |
|
|
CA9730092 rs768288574 |
422 | Q>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9730091 rs748895218 |
422 | Q>R | No |
ClinGen ExAC gnomAD |
|
|
CA408000379 rs1192857709 |
423 | D>N | No |
ClinGen Ensembl |
|
|
CA408000403 rs1210742811 |
424 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
rs1568516838 CA408000410 |
425 | N>D | No |
ClinGen Ensembl |
|
|
rs1450343462 CA408000414 |
425 | N>S | No |
ClinGen gnomAD |
|
|
CA408000444 rs1232996262 |
427 | I>T | No |
ClinGen TOPMed gnomAD |
|
|
CA408000469 rs1600468750 |
429 | Y>C | No |
ClinGen Ensembl |
|
|
rs773754915 CA9730115 |
429 | Y>H | No |
ClinGen ExAC gnomAD |
|
|
CA408000481 rs1267575632 |
430 | A>S | No |
ClinGen gnomAD |
|
|
CA9730116 rs747456966 |
431 | D>V | No |
ClinGen ExAC gnomAD |
|
|
rs1600468793 CA408000523 |
433 | N>T | No |
ClinGen Ensembl |
|
|
CA408000568 rs1388528170 |
436 | K>N | No |
ClinGen gnomAD |
|
|
CA408000578 rs1472583308 |
437 | G>E | No |
ClinGen TOPMed |
|
|
CA310798053 rs887974925 |
438 | K>M | No |
ClinGen TOPMed |
|
|
CA310798054 rs56370008 |
439 | K>E | No |
ClinGen Ensembl |
|
|
rs1329429265 CA408000608 |
439 | K>N | No |
ClinGen TOPMed gnomAD |
|
|
CA408000617 rs1377814553 |
440 | P>A | No |
ClinGen TOPMed gnomAD |
|
|
CA408000612 rs1377814553 |
440 | P>S | No |
ClinGen TOPMed gnomAD |
|
|
CA408000615 rs1377814553 |
440 | P>T | No |
ClinGen TOPMed gnomAD |
|
|
CA408000637 rs1449083414 |
442 | P>S | No |
ClinGen gnomAD |
|
|
rs1489241956 CA408000649 |
443 | Q>* | No |
ClinGen TOPMed |
|
| VAR_015509 | 443 | Q>R | No | UniProt | |
|
CA408000667 rs1376362519 |
444 | A>D | No |
ClinGen gnomAD |
|
|
rs759805287 CA9730119 |
444 | A>S | No |
ClinGen ExAC gnomAD |
|
|
COSM1733697 rs1246015069 CA408000686 |
445 | A>V | Variant assessed as Somatic; 0.0 impact. pancreas [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
|
rs1329853718 CA408000717 |
447 | P>L | No |
ClinGen TOPMed |
|
|
CA408000712 rs1409390586 |
447 | P>S | No |
ClinGen gnomAD |
|
|
CA9730122 rs763076272 |
448 | N>D | No |
ClinGen ExAC gnomAD |
|
|
CA408000757 rs1165275327 |
450 | H>D | No |
ClinGen gnomAD |
|
|
rs527874912 CA9730124 |
451 | T>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs766303171 CA9730126 |
454 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA9730127 rs753660710 |
455 | S>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA408000887 rs1472334782 |
459 | S>T | No |
ClinGen gnomAD |
|
|
CA408000906 rs1168490568 VAR_015510 |
460 | P>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen UniProt NCI-TCGA dbSNP gnomAD |
|
CA9730131 rs376299386 |
461 | Q>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1456779931 CA408000927 |
462 | P>S | No |
ClinGen TOPMed |
|
|
CA310798117 rs370724960 |
463 | A>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9730132 rs147232069 |
463 | A>T | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA9730133 rs370724960 |
463 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA9730135 rs377104734 |
464 | S>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1464969245 CA408000976 |
466 | D>A | No |
ClinGen TOPMed |
|
|
CA408000977 rs1464969245 |
466 | D>G | No |
ClinGen TOPMed |
|
|
rs769969115 CA9730137 |
466 | D>N | No |
ClinGen ExAC gnomAD |
|
|
rs1320556144 CA408000995 |
467 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
CA9730140 rs764268777 |
470 | Y>* | No |
ClinGen ExAC gnomAD |
|
|
CA9730139 rs763022327 |
470 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
CA408001030 rs763022327 |
470 | Y>S | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 471 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA310798145 rs201731716 |
475 | M>R | No |
ClinGen 1000Genomes gnomAD |
|
|
CA9730143 rs766385167 |
475 | M>V | No |
ClinGen ExAC gnomAD |
|
|
CA408001126 rs1600469441 |
477 | H>P | No |
ClinGen Ensembl |
|
|
CA408001152 rs1194044230 |
479 | N>D | No |
ClinGen TOPMed gnomAD |
|
|
rs1600469466 CA408001157 |
479 | N>T | No |
ClinGen Ensembl |
|
|
rs566700469 CA9730144 COSM1410619 |
480 | R>Q | large_intestine [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC TOPMed gnomAD |
|
CA408001165 rs1425717852 |
480 | R>W | No |
ClinGen TOPMed gnomAD |
|
|
CA408001174 rs1600469494 |
481 | T>P | No |
ClinGen Ensembl |
|
|
CA9730145 RCV000958240 rs41278990 |
482 | P>S | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA408001207 rs1466608520 |
483 | K>N | No |
ClinGen gnomAD |
|
|
CA9730146 rs764882188 |
483 | K>R | No |
ClinGen ExAC gnomAD |
|
|
CA9730147 rs752398143 |
484 | Q>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs555638361 CA9730148 |
485 | P>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
CA408001228 rs1400259645 |
485 | P>S | No |
ClinGen gnomAD |
|
|
rs781656196 CA9730152 |
486 | A>D | No |
ClinGen ExAC gnomAD |
|
| VAR_015511 | 486 | A>L | requires 2 nucleotide substitutions [UniProt] | No | UniProt |
|
CA9730151 rs751040166 |
486 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9730150 rs751040166 |
486 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs746304594 CA9730153 |
487 | P>A | No |
ClinGen ExAC gnomAD |
|
|
CA9730155 rs780245154 |
487 | P>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9730156 rs780245154 |
487 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs746304594 CA9730154 |
487 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs367629199 CA9730157 VAR_015512 |
491 | P>L | No |
ClinGen UniProt ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs761977699 CA9730159 |
492 | S>F | No |
ClinGen ExAC gnomAD |
|
|
CA408001313 rs1217108138 |
492 | S>P | No |
ClinGen TOPMed gnomAD |
|
|
rs776719258 CA408001334 |
494 | S>A | No |
ClinGen ExAC gnomAD |
|
|
rs376079666 CA9730162 |
494 | S>L | No |
ClinGen ESP ExAC gnomAD |
|
|
CA9730161 rs776719258 |
494 | S>P | No |
ClinGen ExAC gnomAD |
|
|
CA9730164 rs189066894 |
497 | A>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs762714208 CA9730165 |
498 | S>T | No |
ClinGen ExAC gnomAD |
|
|
rs372228659 CA9730168 |
499 | V>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs368388982 CA9730167 |
499 | V>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs147758372 CA9730169 |
502 | P>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs553964074 CA9730172 |
504 | K>N | No |
ClinGen 1000Genomes ExAC gnomAD |
No associated diseases with P78324
8 regional properties for P78324
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | Immunoglobulin C1-set | 161 - 238 | IPR003597-1 |
| domain | Immunoglobulin C1-set | 263 - 341 | IPR003597-2 |
| domain | Immunoglobulin subtype | 40 - 145 | IPR003599-1 |
| domain | Immunoglobulin subtype | 258 - 350 | IPR003599-2 |
| domain | Immunoglobulin-like domain | 32 - 121 | IPR007110-1 |
| domain | Immunoglobulin-like domain | 148 - 247 | IPR007110-2 |
| domain | Immunoglobulin-like domain | 254 - 348 | IPR007110-3 |
| domain | Immunoglobulin V-set domain | 38 - 144 | IPR013106 |
7 GO annotations of cellular component
| Name | Definition |
|---|---|
| cell surface | The external part of the cell wall and/or plasma membrane. |
| extracellular exosome | A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm. |
| ficolin-1-rich granule membrane | The lipid bilayer surrounding a ficolin-1-rich granule. |
| integral component of plasma membrane | The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
| membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
| plasma membrane | The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. |
| tertiary granule membrane | The lipid bilayer surrounding a tertiary granule. |
7 GO annotations of molecular function
| Name | Definition |
|---|---|
| cell-cell adhesion mediator activity | The binding by a cell-adhesion protein on the cell surface to an extracellular matrix component, to mediate adhesion of the cell to another cell. |
| GTPase regulator activity | Binds to and modulates the activity of a GTPase. |
| protein antigen binding | Binding to a protein antigen. |
| protein binding involved in heterotypic cell-cell adhesion | Binding to a protein or protein complex contributing to the adhesion of two different types of cells. |
| protein phosphatase binding | Binding to a protein phosphatase. |
| protein tyrosine kinase binding | Binding to protein tyrosine kinase. |
| SH3 domain binding | Binding to a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins. |
29 GO annotations of biological process
| Name | Definition |
|---|---|
| cell adhesion | The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules. |
| cell migration | The controlled self-propelled movement of a cell from one site to a destination guided by molecular cues. Cell migration is a central process in the development and maintenance of multicellular organisms. |
| cellular response to hydrogen peroxide | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus. |
| cellular response to interferon-gamma | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interferon-gamma stimulus. Interferon gamma is the only member of the type II interferon found so far. |
| cellular response to interleukin-1 | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-1 stimulus. |
| cellular response to interleukin-12 | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-12 stimulus. |
| cellular response to lipopolysaccharide | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria. |
| monocyte extravasation | The migration of a monocyte from the blood vessels into the surrounding tissue. |
| negative regulation of chemokine (C-C motif) ligand 5 production | Any process that stops, prevents, or reduces the frequency, rate, or extent of production of chemokine (C-C motif) ligand 5. |
| negative regulation of cytokine production involved in inflammatory response | Any process that stops, prevents or reduces the frequency, rate or extent of cytokine production involved in inflammatory response. |
| negative regulation of ERK1 and ERK2 cascade | Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction mediated by the ERK1 and ERK2 cascade. |
| negative regulation of I-kappaB phosphorylation | Any process that stops, prevents or reduces the frequency, rate or extent of I-kappaB phosphorylation. |
| negative regulation of inflammatory response | Any process that stops, prevents, or reduces the frequency, rate or extent of the inflammatory response. |
| negative regulation of interferon-beta production | Any process that stops, prevents, or reduces the frequency, rate, or extent of interferon-beta production. |
| negative regulation of interleukin-6 production | Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-6 production. |
| negative regulation of JNK cascade | Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction mediated by the JNK cascade. |
| negative regulation of macrophage inflammatory protein 1 alpha production | Any process that stops, prevents, or reduces the frequency, rate, or extent of production of macrophage inflammatory protein 1 alpha. |
| negative regulation of nitric oxide biosynthetic process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide. |
| negative regulation of phagocytosis | Any process that stops, prevents, or reduces the frequency, rate or extent of phagocytosis. |
| negative regulation of protein phosphorylation | Any process that stops, prevents or reduces the rate of addition of phosphate groups to amino acids within a protein. |
| negative regulation of tumor necrosis factor production | Any process that stops, prevents, or reduces the frequency, rate, or extent of tumor necrosis factor production. |
| positive regulation of phagocytosis | Any process that activates or increases the frequency, rate or extent of phagocytosis. |
| positive regulation of T cell activation | Any process that activates or increases the frequency, rate or extent of T cell activation. |
| regulation of gene expression | Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product (protein or RNA). |
| regulation of interferon-gamma production | Any process that modulates the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon. |
| regulation of interleukin-1 beta production | Any process that modulates the frequency, rate, or extent of interleukin-1 beta production. |
| regulation of interleukin-6 production | Any process that modulates the frequency, rate, or extent of interleukin-6 production. |
| regulation of nitric oxide biosynthetic process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide. |
| regulation of tumor necrosis factor production | Any process that modulates the frequency, rate or extent of tumor necrosis factor production. |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MEPAGPAPGR | LGPLLCLLLA | ASCAWSGVAG | EEELQVIQPD | KSVLVAAGET | ATLRCTATSL |
| 70 | 80 | 90 | 100 | 110 | 120 |
| IPVGPIQWFR | GAGPGRELIY | NQKEGHFPRV | TTVSDLTKRN | NMDFSIRIGN | ITPADAGTYY |
| 130 | 140 | 150 | 160 | 170 | 180 |
| CVKFRKGSPD | DVEFKSGAGT | ELSVRAKPSA | PVVSGPAARA | TPQHTVSFTC | ESHGFSPRDI |
| 190 | 200 | 210 | 220 | 230 | 240 |
| TLKWFKNGNE | LSDFQTNVDP | VGESVSYSIH | STAKVVLTRE | DVHSQVICEV | AHVTLQGDPL |
| 250 | 260 | 270 | 280 | 290 | 300 |
| RGTANLSETI | RVPPTLEVTQ | QPVRAENQVN | VTCQVRKFYP | QRLQLTWLEN | GNVSRTETAS |
| 310 | 320 | 330 | 340 | 350 | 360 |
| TVTENKDGTY | NWMSWLLVNV | SAHRDDVKLT | CQVEHDGQPA | VSKSHDLKVS | AHPKEQGSNT |
| 370 | 380 | 390 | 400 | 410 | 420 |
| AAENTGSNER | NIYIVVGVVC | TLLVALLMAA | LYLVRIRQKK | AQGSTSSTRL | HEPEKNAREI |
| 430 | 440 | 450 | 460 | 470 | 480 |
| TQDTNDITYA | DLNLPKGKKP | APQAAEPNNH | TEYASIQTSP | QPASEDTLTY | ADLDMVHLNR |
| 490 | 500 | ||||
| TPKQPAPKPE | PSFSEYASVQ | VPRK |