Descriptions

The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.

Autoinhibitory domains (AIDs)

Target domain

Relief mechanism

Assay

cis-regPred

Accessory elements

No accessory elements

Autoinhibited structure

Activated structure

44 structures for P49902

Entry ID Method Resolution Chain Position Source
2J2C X-ray 220 A A 1-536 PDB
2JC9 X-ray 150 A A 1-536 PDB
2JCM X-ray 215 A A 1-536 PDB
2XCV X-ray 230 A A 1-536 PDB
2XCW X-ray 190 A A 1-536 PDB
2XCX X-ray 230 A A 1-536 PDB
2XJB X-ray 230 A A 1-536 PDB
2XJC X-ray 200 A A 1-536 PDB
2XJD X-ray 200 A A 1-536 PDB
2XJE X-ray 230 A A 1-536 PDB
2XJF X-ray 210 A A 1-536 PDB
4H4B X-ray 290 A A 1-536 PDB
5CQZ X-ray 290 A A/B 1-536 PDB
5CR7 X-ray 290 A A/B 1-536 PDB
5K7Y X-ray 179 A A 1-536 PDB
5L4Z X-ray 184 A A 1-536 PDB
5L50 X-ray 164 A A 1-536 PDB
5OPK X-ray 174 A A 3-488 PDB
5OPL X-ray 180 A A 1-536 PDB
5OPM X-ray 168 A A 3-488 PDB
5OPN X-ray 177 A A 3-488 PDB
5OPO X-ray 200 A A 3-488 PDB
5OPP X-ray 170 A A 3-488 PDB
6DD3 X-ray 198 A A 1-536 PDB
6DDB X-ray 280 A A/B 1-536 PDB
6DDC X-ray 291 A A/B 1-536 PDB
6DDH X-ray 235 A A 1-536 PDB
6DDK X-ray 250 A A/B 1-561 PDB
6DDL X-ray 226 A A/B 1-523 PDB
6DDO X-ray 248 A A/B 1-561 PDB
6DDQ X-ray 231 A A/B 1-561 PDB
6DDX X-ray 290 A A 1-536 PDB
6DDY X-ray 180 A A 1-536 PDB
6DDZ X-ray 197 A A 1-536 PDB
6DE0 X-ray 205 A A 1-523 PDB
6DE1 X-ray 215 A A 1-561 PDB
6DE2 X-ray 210 A A 1-561 PDB
6DE3 X-ray 306 A A 1-561 PDB
6FIR X-ray 250 A A 1-536 PDB
6FIS X-ray 230 A A 1-536 PDB
6FIU X-ray 250 A A 1-536 PDB
6FIW X-ray 220 A A 1-536 PDB
6FXH X-ray 230 A A 1-561 PDB
AF-P49902-F1 Predicted AlphaFoldDB

329 variants for P49902

Variant ID(s) Position Change Description Diseaes Association Provenance
rs10883841
RCV000441591
CA5671217
VAR_024244
RCV001511967
3 T>A Hereditary spastic paraplegia 45 [ClinVar] Yes ClinGen
ClinVar
UniProt
1000Genomes
ESP
ExAC
TOPMed
dbSNP
gnomAD
CA5671208
RCV000801581
rs751896016
15 M>T Hereditary spastic paraplegia 45 [ClinVar] Yes ClinGen
ClinVar
ExAC
TOPMed
dbSNP
gnomAD
CA5671206
RCV000652090
rs762854961
19 M>I Hereditary spastic paraplegia 45 [ClinVar] Yes ClinGen
ClinVar
ExAC
dbSNP
gnomAD
rs587777173
RCV001310575
RCV000087268
CA214457
29 R>* Hereditary spastic paraplegia 45 [ClinVar] Yes ClinGen
ClinVar
Ensembl
dbSNP
rs1565150442
CA378171799
RCV000689916
47 K>E Hereditary spastic paraplegia 45 [ClinVar] Yes ClinGen
ClinVar
Ensembl
dbSNP
rs72846108
RCV001214190
CA5671184
RCV002561840
47 K>N Hereditary spastic paraplegia 45 Inborn genetic diseases [ClinVar] Yes ClinGen
ClinVar
1000Genomes
ESP
ExAC
TOPMed
dbSNP
gnomAD
RCV001308576
rs2071354086
78 V>I Hereditary spastic paraplegia 45 [ClinVar] Yes ClinVar
dbSNP
rs763305896
RCV000652085
105 L>missing Hereditary spastic paraplegia 45 [ClinVar] Yes ClinVar
dbSNP
CA5671097
VAR_030242
rs12262171
RCV002525314
136 Q>R Hereditary spastic paraplegia 45 [ClinVar] Yes ClinGen
ClinVar
UniProt
1000Genomes
ESP
ExAC
TOPMed
dbSNP
gnomAD
RCV001030784
CA5671094
rs764453448
COSM283403
144 R>* Hereditary spastic paraplegia 45 Variant assessed as Somatic; 0.0 impact. large_intestine [ClinVar, NCI-TCGA, Cosmic] Yes ClinGen
cosmic curated
ClinVar
ExAC
NCI-TCGA
TOPMed
dbSNP
gnomAD
rs587777174
CA214459
RCV000087271
149 R>* Hereditary spastic paraplegia 45 [ClinVar] Yes ClinGen
ClinVar
Ensembl
dbSNP
rs587777174
RCV001223401
149 R>G Hereditary spastic paraplegia 45 [ClinVar] Yes ClinVar
dbSNP
rs116066839
RCV000973203
RCV001252899
CA5671015
219 V>A Hereditary spastic paraplegia 45 Microcephaly [ClinVar] Yes ClinGen
ClinVar
1000Genomes
ExAC
TOPMed
dbSNP
gnomAD
CA377975555
RCV000994498
rs1590754368
RCV001858790
229 D>H Hereditary spastic paraplegia 45 [ClinVar] Yes ClinGen
ClinVar
Ensembl
dbSNP
CA377971632
rs1564921342
RCV000699427
328 S>P Hereditary spastic paraplegia 45 [ClinVar] Yes ClinGen
ClinVar
Ensembl
dbSNP
RCV000441855
rs1057519867
CA16602792
359 K>Q Lymphoblastic leukemia, acute, with lymphomatous features [ClinVar] Yes ClinGen
ClinVar
Ensembl
dbSNP
rs1590658486
CA377970929
RCV000813580
364 Q>E Hereditary spastic paraplegia 45 [ClinVar] Yes ClinGen
ClinVar
Ensembl
dbSNP
rs769873284
COSM200312
CA212323644
RCV001035006
367 R>* Hereditary spastic paraplegia 45 large_intestine [ClinVar, Cosmic] Yes ClinGen
cosmic curated
ClinVar
dbSNP
gnomAD
CA5670858
RCV000797354
rs138513368
380 H>R Hereditary spastic paraplegia 45 Variant assessed as Somatic; 0.0 impact. [ClinVar, NCI-TCGA] Yes ClinGen
ClinVar
ESP
ExAC
NCI-TCGA
TOPMed
dbSNP
gnomAD
CA5670833
RCV000543546
rs775006132
COSM1345538
391 E>G Hereditary spastic paraplegia 45 Variant assessed as Somatic; 0.0 impact. large_intestine [ClinVar, NCI-TCGA, Cosmic] Yes ClinGen
cosmic curated
ClinVar
ExAC
NCI-TCGA
dbSNP
rs886037656
RCV000087269
409 S>missing Hereditary spastic paraplegia 45 [ClinVar] Yes ClinVar
dbSNP
CA377969323
RCV001061793
rs1294333255
420 Q>R Hereditary spastic paraplegia 45 [ClinVar] Yes ClinGen
ClinVar
TOPMed
dbSNP
RCV002552648
rs1433755096
RCV001048722
430 M>T Hereditary spastic paraplegia 45 Inborn genetic diseases [ClinVar] Yes ClinVar
dbSNP
CA377968978
rs1419090736
RCV001224426
457 Y>* Hereditary spastic paraplegia 45 [ClinVar] Yes ClinGen
ClinVar
TOPMed
dbSNP
gnomAD
VAR_079707 460 L>P SPG45; unknown pathological significance [UniProt] Yes UniProt
CA5670730
RCV001072063
RCV003160595
rs766540908
510 T>P Hereditary spastic paraplegia 45 Inborn genetic diseases [ClinVar] Yes ClinGen
ClinVar
ExAC
TOPMed
dbSNP
gnomAD
CA5670703
rs141031435
RCV000652089
555 E>D Hereditary spastic paraplegia 45 [ClinVar] Yes ClinGen
ClinVar
ESP
TOPMed
dbSNP
gnomAD
rs1338040632
RCV000652091
560 E>missing Hereditary spastic paraplegia 45 [ClinVar] Yes ClinVar
dbSNP
RCV000556899
rs537259520
RCV001848970
560 E>missing Hereditary spastic paraplegia Hereditary spastic paraplegia 45 [ClinVar] Yes ClinVar
dbSNP
RCV001326180
rs537259520
RCV001847240
561 E>missing Hereditary spastic paraplegia Hereditary spastic paraplegia 45 [ClinVar] Yes ClinVar
dbSNP
RCV001879065
rs537259520
561 E>missing Hereditary spastic paraplegia 45 [ClinVar] Yes ClinVar
dbSNP
RCV001232671
rs1380291300
561 E>missing Hereditary spastic paraplegia 45 [ClinVar] Yes ClinVar
dbSNP
rs10883841
CA378175168
3 T>P No ClinGen
1000Genomes
ESP
ExAC
TOPMed
gnomAD
CA5671216
rs777401549
7 D>N No ClinGen
ExAC
gnomAD
rs762409585
CA378175094
8 R>G No ClinGen
ExAC
gnomAD
CA5671214
rs749601574
8 R>L No ClinGen
ExAC
TOPMed
gnomAD
CA378175091
rs749601574
COSM914307
8 R>Q endometrium [Cosmic] No ClinGen
cosmic curated
ExAC
TOPMed
gnomAD
rs762409585
CA5671215
8 R>W Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] No ClinGen
ExAC
NCI-TCGA
gnomAD
rs756539515
CA5671212
12 A>E No ClinGen
ExAC
TOPMed
gnomAD
CA5671213
rs756539515
12 A>V No ClinGen
ExAC
TOPMed
gnomAD
rs750539988
CA5671211
13 A>E No ClinGen
ExAC
gnomAD
rs370777380
CA5671210
14 D>G No ClinGen
ESP
ExAC
TOPMed
gnomAD
TCGA novel 15 M>A Variant assessed as Somatic; impact. [NCI-TCGA] No NCI-TCGA
CA5671209
rs757325798
15 M>V No ClinGen
ExAC
TOPMed
gnomAD
rs764397310
CA5671207
19 M>V No ClinGen
ExAC
gnomAD
CA378174926
rs1288051491
21 K>M No ClinGen
TOPMed
rs752470288
CA5671205
23 A>T No ClinGen
ExAC
gnomAD
CA212415152
rs751395114
23 A>V No ClinGen
gnomAD
CA5671204
rs765292734
28 R>C No ClinGen
ExAC
TOPMed
gnomAD
CA5671203
rs759339080
28 R>H No ClinGen
ExAC
TOPMed
gnomAD
CA378174843
rs765292734
28 R>S No ClinGen
ExAC
TOPMed
gnomAD
TCGA novel 29 R>Q Variant assessed as Somatic; impact. [NCI-TCGA] No NCI-TCGA
TCGA novel 30 E>K Variant assessed as Somatic; impact. [NCI-TCGA] No NCI-TCGA
rs1221445225
CA378174807
31 A>T No ClinGen
gnomAD
rs1340277706
CA378171867
36 F>L No ClinGen
gnomAD
CA378171856
rs1330033795
38 N>S No ClinGen
gnomAD
rs1037882773
CA212387247
39 R>* No ClinGen
Ensembl
rs1393472957
CA378171849
39 R>L No ClinGen
gnomAD
CA378171841
rs1565150621
40 S>R No ClinGen
Ensembl
rs1141098
COSM1345543
CA5671186
43 M>V Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] No ClinGen
cosmic curated
ESP
ExAC
NCI-TCGA
gnomAD
rs754768761
CA5671185
44 E>G No ClinGen
ExAC
gnomAD
TCGA novel 45 K>N Variant assessed as Somatic; impact. [NCI-TCGA] No NCI-TCGA
CA378171801
rs1302349591
46 I>M No ClinGen
TOPMed
gnomAD
rs377751446
CA5671182
53 M>T No ClinGen
ESP
ExAC
TOPMed
gnomAD
rs766283362
CA5671183
53 M>V No ClinGen
ExAC
gnomAD
rs1400732197
CA378171727
56 T>I No ClinGen
TOPMed
CA378171725
rs868119072
57 L>F Variant assessed as Somatic; impact. [NCI-TCGA] No ClinGen
NCI-TCGA
TOPMed
rs868119072
CA212387207
57 L>I No ClinGen
TOPMed
CA377978468
rs1435920806
59 V>A No ClinGen
gnomAD
CA5671163
rs767057029
61 K>M No ClinGen
ExAC
gnomAD
CA5671164
rs767057029
61 K>T No ClinGen
ExAC
gnomAD
CA5671161
rs773930069
66 E>G No ClinGen
ExAC
gnomAD
CA5671159
rs759820618
68 L>V No ClinGen
ExAC
gnomAD
rs1434909016
CA377978253
72 L>I No ClinGen
TOPMed
rs1475459121
CA377978227
73 T>I No ClinGen
TOPMed
gnomAD
CA5671157
rs771587540
74 V>L No ClinGen
ExAC
gnomAD
rs747566685
CA5671156
75 E>D No ClinGen
ExAC
gnomAD
CA212337986
rs371125987
75 E>Q No ClinGen
ESP
TOPMed
gnomAD
rs773823085
CA377978180
76 R>I No ClinGen
ExAC
TOPMed
gnomAD
rs773823085
CA5671155
76 R>T No ClinGen
ExAC
TOPMed
gnomAD
rs1276787004
CA377978135
79 S>C No ClinGen
gnomAD
TCGA novel 79 S>Y Variant assessed as Somatic; impact. [NCI-TCGA] No NCI-TCGA
rs1361855351
CA377978123
80 I>L No ClinGen
TOPMed
CA5671153
rs143973542
84 Q>L No ClinGen
ESP
ExAC
TOPMed
gnomAD
CA5671154
rs143973542
84 Q>R No ClinGen
ESP
ExAC
TOPMed
gnomAD
CA377977994
COSM3806371
rs1590866563
87 L>F breast [Cosmic] No ClinGen
cosmic curated
Ensembl
CA5671152
rs779008902
88 S>G No ClinGen
ExAC
gnomAD
CA377977922
rs1219222884
90 A>G No ClinGen
TOPMed
CA5671148
rs755875749
93 S>P No ClinGen
ExAC
rs377735697
CA5671147
96 P>L No ClinGen
ESP
ExAC
gnomAD
rs781092106
CA5671146
98 R>G No ClinGen
ExAC
gnomAD
TCGA novel 98 R>W Variant assessed as Somatic; impact. [NCI-TCGA] No NCI-TCGA
rs773870376
CA5671136
103 D>G No ClinGen
ExAC
gnomAD
TCGA novel 106 Y>E Variant assessed as Somatic; impact. [NCI-TCGA] No NCI-TCGA
rs761830229
CA5671133
106 Y>N No ClinGen
ExAC
gnomAD
rs1446916348
CA377977635
107 G>A No ClinGen
gnomAD
CA212337396
rs988179515
109 L>V No ClinGen
Ensembl
rs1307699666
CA377977607
110 L>S No ClinGen
gnomAD
rs768600364
CA5671131
113 D>N No ClinGen
ExAC
gnomAD
CA5671129
rs780137833
117 N>S No ClinGen
ExAC
gnomAD
TCGA novel 118 L>I Variant assessed as Somatic; impact. [NCI-TCGA] No NCI-TCGA
rs1292530222
CA377977521
118 L>V No ClinGen
gnomAD
CA377977463
rs1311918940
123 H>R No ClinGen
gnomAD
TCGA novel 129 R>M Variant assessed as Somatic; impact. [NCI-TCGA] No NCI-TCGA
CA377977392
rs1294543190
129 R>S No ClinGen
gnomAD
rs1590855130
CA377977389
130 G>R No ClinGen
Ensembl
CA5671098
rs753518728
131 P>L No ClinGen
ExAC
gnomAD
CA377976435
rs1590791442
134 R>G No ClinGen
Ensembl
TCGA novel 140 K>T Variant assessed as Somatic; impact. [NCI-TCGA] No NCI-TCGA
CA377976316
rs1195771135
142 I>N No ClinGen
TOPMed
CA377976289
rs1339375757
144 R>Q No ClinGen
gnomAD
rs765462890
CA5671091
148 E>V No ClinGen
ExAC
gnomAD
CA377976214
rs1315333509
150 F>L No ClinGen
gnomAD
rs372800976
CA5671089
152 I>F No ClinGen
ESP
ExAC
TOPMed
gnomAD
CA5671088
rs372800976
152 I>L No ClinGen
ESP
ExAC
TOPMed
gnomAD
CA377976138
rs1298943557
155 T>I No ClinGen
gnomAD
CA377976127
rs1369817879
157 F>L No ClinGen
TOPMed
CA377976117
rs1453456442
158 N>S No ClinGen
gnomAD
CA377976106
rs1387152557
160 P>S No ClinGen
gnomAD
rs1267748680
CA377976077
162 T>I No ClinGen
gnomAD
rs200072674
CA212333879
163 Y>F No ClinGen
1000Genomes
rs1340184014
CA377976046
167 C>Y No ClinGen
gnomAD
rs762980266
RCV000498514
169 V>missing No ClinVar
dbSNP
CA377976010
rs1564959973
172 F>L No ClinGen
Ensembl
TCGA novel 172 F>L Variant assessed as Somatic; impact. [NCI-TCGA] No NCI-TCGA
CA377976005
rs1217247926
173 T>I No ClinGen
Ensembl
rs1348834719 173 T>Y Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] No NCI-TCGA
CA5671078
rs779561888
174 N>H No ClinGen
ExAC
gnomAD
CA212333851
rs944301157
176 P>S No ClinGen
Ensembl
CA377975971
rs1425381216
178 Y>C No ClinGen
gnomAD
rs1161337034
CA377975962
179 T>I No ClinGen
gnomAD
CA5671048
rs760856784
181 C>* No ClinGen
ExAC
gnomAD
CA5671047
rs761543688
183 T>P No ClinGen
ExAC
TOPMed
gnomAD
rs1305679810
CA377975919
184 G>R No ClinGen
TOPMed
gnomAD
rs1166034561
CA377975873
190 L>H No ClinGen
gnomAD
COSM914304
rs1038398074
CA212328499
195 R>Q Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] No ClinGen
cosmic curated
NCI-TCGA
TOPMed
gnomAD
CA5671044
rs774448444
195 R>W Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] No ClinGen
ExAC
NCI-TCGA
gnomAD
CA5671043
rs768651632
199 Q>* No ClinGen
ExAC
TOPMed
gnomAD
CA212328481
rs952030661
199 Q>H No ClinGen
Ensembl
CA5671042
rs762580200
200 D>G No ClinGen
ExAC
gnomAD
rs1564954073
CA377975779
203 D>E No ClinGen
Ensembl
TCGA novel 203 D>Y Variant assessed as Somatic; impact. [NCI-TCGA] No NCI-TCGA
rs769321277
CA5671040
206 D>H No ClinGen
ExAC
gnomAD
rs745543095
CA5671039
207 W>G No ClinGen
ExAC
gnomAD
CA377975744
rs1288943666
209 H>N No ClinGen
gnomAD
CA377975735
rs1228743384
210 Y>H No ClinGen
gnomAD
rs1453382388
CA377975635
222 L>P No ClinGen
gnomAD
rs1359934879
CA377975633
223 E>K No ClinGen
gnomAD
rs774747772
CA5671014
224 K>N No ClinGen
ExAC
gnomAD
rs1431496089
CA377975603
225 Y>C No ClinGen
gnomAD
CA377975589
rs1355588604
226 V>A No ClinGen
TOPMed
rs758139320
CA5670980
232 L>M No ClinGen
ExAC
gnomAD
CA5670978
rs765117850
233 P>L No ClinGen
ExAC
gnomAD
CA5670979
rs752467649
233 P>T No ClinGen
ExAC
gnomAD
rs1249138765
CA377975042
235 L>F No ClinGen
gnomAD
CA377975039
rs1288561387
235 L>P No ClinGen
TOPMed
rs754895062
CA5670977
241 E>Q No ClinGen
ExAC
TOPMed
gnomAD
rs1226896141
CA377974978
242 V>L No ClinGen
TOPMed
TCGA novel 246 F>L Variant assessed as Somatic; impact. [NCI-TCGA] No NCI-TCGA
rs753745374
CA5670976
246 F>L No ClinGen
ExAC
gnomAD
rs148650444
CA5670974
248 A>G No ClinGen
1000Genomes
ESP
ExAC
TOPMed
gnomAD
rs148650444
CA5670975
248 A>V No ClinGen
1000Genomes
ESP
ExAC
TOPMed
gnomAD
rs767133782
CA5670972
250 N>S No ClinGen
ExAC
gnomAD
rs1198924217
CA377974771
253 Y>* No ClinGen
gnomAD
rs763260782
CA5670971
253 Y>C No ClinGen
ExAC
gnomAD
CA377974723
rs1344739408
256 T>R No ClinGen
gnomAD
rs1270090631
CA377974696
257 D>E No ClinGen
gnomAD
TCGA novel 259 I>S Variant assessed as Somatic; impact. [NCI-TCGA] No NCI-TCGA
rs761579995
CA5670951
261 T>S No ClinGen
ExAC
TOPMed
gnomAD
CA5670947
rs771861546
268 H>R No ClinGen
ExAC
gnomAD
CA377973421
rs1233408367
270 P>R No ClinGen
gnomAD
CA5670946
rs771497418
271 K>R No ClinGen
ExAC
gnomAD
rs1473918831
CA377972626
275 S>P No ClinGen
gnomAD
rs375733478
CA212324755
277 R>* No ClinGen
ESP
TOPMed
gnomAD
CA5670923
rs774639543
277 R>Q Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] No ClinGen
ExAC
NCI-TCGA
TOPMed
gnomAD
rs1028613768
CA212324742
280 Q>* No ClinGen
gnomAD
rs1028613768
CA377972547
280 Q>E No ClinGen
gnomAD
rs199588287
CA212324740
280 Q>P No ClinGen
1000Genomes
rs768829960
CA5670922
281 S>P No ClinGen
ExAC
TOPMed
gnomAD
CA377972409
rs1306826286
288 V>A No ClinGen
gnomAD
rs1332301894
CA377972386
290 A>S No ClinGen
gnomAD
TCGA novel 290 A>V Variant assessed as Somatic; impact. [NCI-TCGA] No NCI-TCGA
CA5670919
rs769548902
291 R>Q Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] No ClinGen
ExAC
NCI-TCGA
gnomAD
rs775316562
CA5670920
291 R>W No ClinGen
ExAC
TOPMed
gnomAD
rs1009620186
CA212324702
296 F>S No ClinGen
TOPMed
gnomAD
rs1234315434
CA377972211
296 F>V No ClinGen
TOPMed
CA377972142
rs1564924220
300 T>I No ClinGen
Ensembl
rs1040981100
CA212324689
301 V>I No ClinGen
TOPMed
rs745869293
CA5670917
303 R>C No ClinGen
ExAC
gnomAD
rs780974514
CA5670916
303 R>H No ClinGen
ExAC
gnomAD
rs1463329393
CA377972050
307 T>A No ClinGen
gnomAD
rs1415972113
CA377972041
307 T>S No ClinGen
gnomAD
CA377971939
rs1188927869
310 G>S No ClinGen
gnomAD
CA377971923
rs1466026056
311 K>Q No ClinGen
gnomAD
CA377971919
rs1258565894
311 K>R No ClinGen
gnomAD
rs926878263
CA212324445
314 I>T No ClinGen
TOPMed
gnomAD
rs776631372
CA5670896
315 G>D No ClinGen
ExAC
gnomAD
rs1328439123
CA377971824
316 T>A No ClinGen
TOPMed
CA5670894
rs746549118
320 P>A No ClinGen
ExAC
gnomAD
TCGA novel 322 Q>K Variant assessed as Somatic; impact. [NCI-TCGA] No NCI-TCGA
rs747868392
CA5670891
323 H>D No ClinGen
ExAC
TOPMed
gnomAD
rs1258460570
CA377971704
323 H>R No ClinGen
TOPMed
CA5670892
rs747868392
323 H>Y No ClinGen
ExAC
TOPMed
gnomAD
rs1590671523
CA377971688
324 G>A No ClinGen
Ensembl
rs913937142
CA212324421
326 V>I Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] No ClinGen
NCI-TCGA
TOPMed
gnomAD
TCGA novel 329 G>V Variant assessed as Somatic; impact. [NCI-TCGA] No NCI-TCGA
rs1026230956
CA377971474
330 G>A No ClinGen
TOPMed
CA212323725
rs1026230956
330 G>D No ClinGen
TOPMed
rs1359768582
CA377971599
330 G>R No ClinGen
gnomAD
CA5670874
rs200840268
334 T>A No ClinGen
1000Genomes
ExAC
gnomAD
rs990110554
CA212323694
334 T>M No ClinGen
TOPMed
gnomAD
CA5670875
rs200840268
334 T>S No ClinGen
1000Genomes
ExAC
gnomAD
TCGA novel 342 K>R Variant assessed as Somatic; impact. [NCI-TCGA] No NCI-TCGA
TCGA novel 345 D>Y Variant assessed as Somatic; impact. [NCI-TCGA] No NCI-TCGA
CA5670868
rs752068317
355 G>E No ClinGen
ExAC
gnomAD
rs758473809
CA5670866
363 R>Q No ClinGen
ExAC
gnomAD
CA377970939
rs1250013727
363 R>W No ClinGen
gnomAD
COSM914303
CA16602791
rs1057519866
367 R>Q large_intestine Variant assessed as Somatic; impact. endometrium [Cosmic, NCI-TCGA] No ClinGen
cosmic curated
Ensembl
NCI-TCGA
rs1354856276
CA377970870
368 T>P No ClinGen
gnomAD
CA377970855
rs1308582415
369 F>I No ClinGen
gnomAD
CA5670863
rs759724715
369 F>S No ClinGen
ExAC
gnomAD
CA377970831
rs1297450948
370 L>S No ClinGen
gnomAD
rs1188110455
CA377970790
373 P>S No ClinGen
TOPMed
rs576234674
CA5670861
374 E>K No ClinGen
1000Genomes
ExAC
gnomAD
rs867468436
CA212323600
376 A>T No ClinGen
TOPMed
gnomAD
CA377970745
rs1159951134
376 A>V No ClinGen
TOPMed
CA5670859
rs773287742
COSM4135641
377 Q>* pancreas [Cosmic] No ClinGen
cosmic curated
ExAC
gnomAD
rs1227991196
CA377970712
378 E>K No ClinGen
gnomAD
rs201418244
CA5670857
385 K>E No ClinGen
1000Genomes
ExAC
gnomAD
CA5670856
rs774055847
385 K>R No ClinGen
ExAC
TOPMed
gnomAD
CA5670854
rs768184845
386 S>N No ClinGen
ExAC
TOPMed
gnomAD
CA5670836
rs774430005
387 S>L No ClinGen
ExAC
TOPMed
gnomAD
CA5670835
rs763574435
388 L>F No ClinGen
ExAC
gnomAD
TCGA novel 388 L>P Variant assessed as Somatic; impact. [NCI-TCGA] No NCI-TCGA
rs1355837934
CA377969725
391 E>K No ClinGen
TOPMed
rs184419317
CA212322221
392 L>F No ClinGen
1000Genomes
gnomAD
CA212322219
rs373379361
393 Q>* No ClinGen
ESP
TOPMed
rs769443981
CA5670832
396 D>G No ClinGen
ExAC
gnomAD
rs1319809123
CA377969637
398 F>L No ClinGen
gnomAD
CA377969641
rs1297260676
398 F>S No ClinGen
TOPMed
TCGA novel 403 Y>C Variant assessed as Somatic; impact. [NCI-TCGA] No NCI-TCGA
CA16602793
rs1057519868
407 D>A No ClinGen
Ensembl
rs374172381
CA5670805
412 E>D No ClinGen
ESP
ExAC
gnomAD
CA5670804
rs558105444
413 R>H Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] No ClinGen
1000Genomes
ExAC
NCI-TCGA
CA5670800
rs759224877
418 S>P No ClinGen
ExAC
TOPMed
gnomAD
rs533660770
CA212321650
COSM3806370
419 I>V breast [Cosmic] No ClinGen
cosmic curated
1000Genomes
TCGA novel 421 R>I Variant assessed as Somatic; impact. [NCI-TCGA] No NCI-TCGA
CA5670799
COSM290582
rs776259786
422 R>C Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] No ClinGen
cosmic curated
ExAC
NCI-TCGA
TOPMed
gnomAD
CA5670798
rs772482387
422 R>H No ClinGen
ExAC
TOPMed
gnomAD
rs147120336
CA212321629
423 I>T No ClinGen
ESP
CA212321618
rs779181180
424 K>N No ClinGen
gnomAD
rs1590597916
CA377969231
425 K>T No ClinGen
Ensembl
rs1433755096
CA377969171
430 M>R No ClinGen
TOPMed
gnomAD
rs775844720
CA5670770
431 D>V No ClinGen
ExAC
gnomAD
rs1355702812
COSM1286707
CA377969118
436 M>I autonomic_ganglia Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] No ClinGen
cosmic curated
NCI-TCGA
TOPMed
gnomAD
rs1017476982
CA212321344
437 M>L No ClinGen
Ensembl
CA377969100
rs1272078839
439 S>N No ClinGen
gnomAD
rs771233729
CA5670766
441 F>L No ClinGen
ExAC
gnomAD
CA212321309
rs985929069
442 R>C No ClinGen
gnomAD
CA5670765
rs747179682
446 R>Q No ClinGen
ExAC
TOPMed
gnomAD
rs1222615420
CA377969057
446 R>W No ClinGen
TOPMed
gnomAD
rs1443548253
CA377969027
450 F>L No ClinGen
gnomAD
rs1048621280
CA377969006
453 Q>H No ClinGen
TOPMed
gnomAD
rs1431600760
CA377969000
454 V>A No ClinGen
gnomAD
CA212321298
rs1030219633
COSM1217966
456 R>H large_intestine [Cosmic] No ClinGen
cosmic curated
gnomAD
rs948869581
CA212321293
459 D>E No ClinGen
TOPMed
CA5670763
rs758124987
460 L>V No ClinGen
ExAC
gnomAD
CA377968955
rs1260681713
461 Y>C Variant assessed as Somatic; impact. [NCI-TCGA] No ClinGen
NCI-TCGA
TOPMed
CA377968942
rs1452264387
463 A>S No ClinGen
TOPMed
gnomAD
CA377968933
rs1266276091
464 S>F No ClinGen
gnomAD
rs1186701443
CA377968917
467 N>D No ClinGen
gnomAD
CA377968912
rs1180354638
467 N>I No ClinGen
TOPMed
rs1180354638
CA377968913
467 N>S No ClinGen
TOPMed
rs1420688161
CA377968898
470 Y>H No ClinGen
TOPMed
CA377968885
rs138710030
471 Y>* No ClinGen
ESP
ExAC
TOPMed
gnomAD
TCGA novel 473 F>C Variant assessed as Somatic; impact. [NCI-TCGA] No NCI-TCGA
CA377968812
rs1353695413
482 V>I No ClinGen
gnomAD
CA377968417
rs1352405866
486 H>N No ClinGen
gnomAD
CA377968412
rs1169468160
486 H>R No ClinGen
gnomAD
TCGA novel 493 T>A Variant assessed as Somatic; impact. [NCI-TCGA] No NCI-TCGA
CA377968301
rs932084884
494 H>Q No ClinGen
TOPMed
rs749191440
CA5670740
494 H>R No ClinGen
ExAC
gnomAD
rs779604935
CA5670739
495 V>I No ClinGen
ExAC
gnomAD
rs755564008
CA5670738
496 D>G No ClinGen
ExAC
gnomAD
rs1294497468
CA377968283
496 D>H No ClinGen
TOPMed
rs1055812
CA212320530
497 I>F No ClinGen
ExAC
TOPMed
gnomAD
rs767007558
CA5670736
497 I>T No ClinGen
ExAC
gnomAD
rs1055812
CA5670737
497 I>V No ClinGen
ExAC
TOPMed
gnomAD
rs758818955
CA5670735
499 E>G No ClinGen
ExAC
TOPMed
gnomAD
rs150204690
CA5670734
501 E>D No ClinGen
ESP
ExAC
TOPMed
gnomAD
rs1335692779
CA377968178
503 P>L No ClinGen
gnomAD
rs908461351
CA212320486
506 T>I No ClinGen
TOPMed
rs760164136
CA5670732
507 R>Q No ClinGen
ExAC
gnomAD
CA5670733
rs765678401
507 R>W No ClinGen
ExAC
TOPMed
gnomAD
COSM1470311
rs777275675
CA5670731
509 R>C prostate [Cosmic] No ClinGen
cosmic curated
ExAC
gnomAD
CA377968110
rs1307540476
509 R>H No ClinGen
gnomAD
rs370709938
CA5670729
510 T>I No ClinGen
ESP
ExAC
TOPMed
gnomAD
rs370709938
CA377968100
510 T>K No ClinGen
ESP
ExAC
TOPMed
gnomAD
TCGA novel 516 D>Y Variant assessed as Somatic; impact. [NCI-TCGA] No NCI-TCGA
rs1461698758
CA377968010
517 T>A No ClinGen
gnomAD
CA5670726
rs772144701
518 D>E No ClinGen
ExAC
gnomAD
CA377967961
rs1456904440
520 K>N No ClinGen
gnomAD
CA377967965
rs1564895967
520 K>R No ClinGen
Ensembl
rs774169900
CA5670724
521 R>Q No ClinGen
ExAC
TOPMed
gnomAD
rs777429683
CA5670725
521 R>W No ClinGen
ExAC
TOPMed
gnomAD
CA5670723
rs368467266
522 H>Y No ClinGen
ESP
ExAC
TOPMed
gnomAD
CA212320409
rs140984378
523 Q>* No ClinGen
ESP
TOPMed
gnomAD
CA5670722
rs779906226
523 Q>H No ClinGen
ExAC
TOPMed
gnomAD
CA377967895
rs1355682373
526 R>L No ClinGen
gnomAD
CA377967891
rs1355682373
526 R>Q No ClinGen
gnomAD
TCGA novel 526 R>V Variant assessed as Somatic; impact. [NCI-TCGA] No NCI-TCGA
CA5670719
rs745326714
526 R>W Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] No ClinGen
ExAC
NCI-TCGA
TOPMed
gnomAD
CA5670717
rs756913240
528 I>V No ClinGen
ExAC
TOPMed
gnomAD
CA595690138
rs1308335620
529 S>T No ClinGen
gnomAD
CA5670716
rs373910623
530 E>K No ClinGen
ESP
ExAC
TOPMed
gnomAD
CA377967835
rs1244653844
531 I>V No ClinGen
TOPMed
CA377967777
rs1264223560
535 N>S No ClinGen
TOPMed
CA212320386
rs1052439538
536 L>I No ClinGen
Ensembl
CA377967722
rs1247558433
540 A>T No ClinGen
TOPMed
rs200203060
CA5670715
540 A>V No ClinGen
ExAC
TOPMed
gnomAD
rs3740387
CA377967592
549 D>E No ClinGen
1000Genomes
ESP
ExAC
TOPMed
gnomAD
rs760841185
CA5670710
550 E>D No ClinGen
ExAC
TOPMed
gnomAD
CA377967562
rs1451220173
553 D>E No ClinGen
TOPMed
gnomAD
rs116702241
CA5670707
554 E>D No ClinGen
1000Genomes
ESP
ExAC
TOPMed
gnomAD
TCGA novel 555 E>* Variant assessed as Somatic; impact. [NCI-TCGA] No NCI-TCGA
CA377967543
rs1311075282
556 E>G No ClinGen
TOPMed
rs1206960776
CA377967513
560 E>* No ClinGen
gnomAD
TCGA novel 560 E>G Variant assessed as Somatic; impact. [NCI-TCGA] No NCI-TCGA
rs768451372
CA5670695
561 E>* No ClinGen
ExAC
gnomAD

1 associated diseases with P49902

[MIM: 613162]: Spastic paraplegia 45, autosomal recessive (SPG45)

A form of spastic paraplegia, a neurodegenerative disorder characterized by a slow, gradual, progressive weakness and spasticity of the lower limbs. Rate of progression and the severity of symptoms are quite variable. Initial symptoms may include difficulty with balance, weakness and stiffness in the legs, muscle spasms, and dragging the toes when walking. In some forms of the disorder, bladder symptoms (such as incontinence) may appear, or the weakness and stiffness may spread to other parts of the body. Some SPG45 patients manifest intellectual disability, contractures and learning disability. {ECO:0000269|PubMed:24482476, ECO:0000269|PubMed:28884889}. Note=The disease is caused by variants affecting the gene represented in this entry.

Without disease ID
  • A form of spastic paraplegia, a neurodegenerative disorder characterized by a slow, gradual, progressive weakness and spasticity of the lower limbs. Rate of progression and the severity of symptoms are quite variable. Initial symptoms may include difficulty with balance, weakness and stiffness in the legs, muscle spasms, and dragging the toes when walking. In some forms of the disorder, bladder symptoms (such as incontinence) may appear, or the weakness and stiffness may spread to other parts of the body. Some SPG45 patients manifest intellectual disability, contractures and learning disability. {ECO:0000269|PubMed:24482476, ECO:0000269|PubMed:28884889}. Note=The disease is caused by variants affecting the gene represented in this entry.

No regional properties for P49902

Type Name Position InterPro Accession
No domain, repeats, and functional sites for P49902

Functions

Description
EC Number 2.7.1.77 Phosphotransferases with an alcohol group as acceptor
Subcellular Localization
  • Cytoplasm, cytosol
PANTHER Family
PANTHER Subfamily
PANTHER Protein Class
PANTHER Pathway Category No pathway information available

1 GO annotations of cellular component

Name Definition
cytosol The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

8 GO annotations of molecular function

Name Definition
5'-nucleotidase activity Catalysis of the reaction: a 5'-ribonucleotide + H2O = a ribonucleoside + phosphate.
ATP binding Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GMP 5'-nucleotidase activity Catalysis of the reaction: 5'-GMP + H2O = guanosine + phosphate.
identical protein binding Binding to an identical protein or proteins.
IMP 5'-nucleotidase activity Catalysis of the reaction: 5'-IMP + H2O = inosine + phosphate.
metal ion binding Binding to a metal ion.
nucleoside phosphotransferase activity Catalysis of the reaction: a nucleotide + a 2'-deoxynucleoside = a nucleoside + a 2'-deoxynucleoside 5'-monophosphate.
XMP 5'-nucleosidase activity Catalysis of the reaction: 5'XMP + H20 = phosphate + xanthosine.

7 GO annotations of biological process

Name Definition
adenosine metabolic process The chemical reactions and pathways involving adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes.
allantoin metabolic process The chemical reactions and pathways involving allantoin, (2,5-dioxo-4-imidazolidinyl)urea, an intermediate or end product of purine catabolism.
dGMP metabolic process The chemical reactions and pathways involving dGMP, deoxyguanosine monophosphate (2'-deoxyguanosine 5'-phosphate).
GMP metabolic process The chemical reactions and pathways involving GMP, guanosine monophosphate.
IMP catabolic process The chemical reactions and pathways resulting in the breakdown of IMP, inosine monophosphate.
IMP metabolic process The chemical reactions and pathways involving IMP, inosine monophosphate.
nucleotide phosphorylation The process of introducing one or more phosphate groups into a nucleotide to produce a phosphorylated nucleoside.

1 homologous proteins in AiPD

UniProt AC Gene Name Protein Name Species Evidence Code
Q3V1L4 Nt5c2 Cytosolic purine 5'-nucleotidase Mus musculus (Mouse) PR
10 20 30 40 50 60
MSTSWSDRLQ NAADMPANMD KHALKKYRRE AYHRVFVNRS LAMEKIKCFG FDMDYTLAVY
70 80 90 100 110 120
KSPEYESLGF ELTVERLVSI GYPQELLSFA YDSTFPTRGL VFDTLYGNLL KVDAYGNLLV
130 140 150 160 170 180
CAHGFNFIRG PETREQYPNK FIQRDDTERF YILNTLFNLP ETYLLACLVD FFTNCPRYTS
190 200 210 220 230 240
CETGFKDGDL FMSYRSMFQD VRDAVDWVHY KGSLKEKTVE NLEKYVVKDG KLPLLLSRMK
250 260 270 280 290 300
EVGKVFLATN SDYKYTDKIM TYLFDFPHGP KPGSSHRPWQ SYFDLILVDA RKPLFFGEGT
310 320 330 340 350 360
VLRQVDTKTG KLKIGTYTGP LQHGIVYSGG SSDTICDLLG AKGKDILYIG DHIFGDILKS
370 380 390 400 410 420
KKRQGWRTFL VIPELAQELH VWTDKSSLFE ELQSLDIFLA ELYKHLDSSS NERPDISSIQ
430 440 450 460 470 480
RRIKKVTHDM DMCYGMMGSL FRSGSRQTLF ASQVMRYADL YAASFINLLY YPFSYLFRAA
490 500 510 520 530 540
HVLMPHESTV EHTHVDINEM ESPLATRNRT SVDFKDTDYK RHQLTRSISE IKPPNLFPLA
550 560
PQEITHCHDE DDDEEEEEEE E