P35558
Gene name |
PCK1 |
Protein name |
Phosphoenolpyruvate carboxykinase, cytosolic [GTP] |
Names |
PEPCK-C, Serine-protein kinase PCK1 |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:5105 |
EC number |
4.1.1.32: Carboxy-lyases |
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
8 structures for P35558
631 variants for P35558
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
RCV000970554 rs147120329 CA9921868 RCV001138455 |
3 | P>S | Phosphoenolpyruvate carboxykinase deficiency, cytosolic [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
RCV001856773 CA9921882 rs140235265 RCV001138457 |
22 | S>G | Phosphoenolpyruvate carboxykinase deficiency, cytosolic [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
CA9921903 rs202197769 VAR_079633 RCV000509046 |
45 | I>T | Phosphoenolpyruvate carboxykinase deficiency, cytosolic PCKDC; decreased stability; no effect on phosphoenolpyruvate carboxykinase activity [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt ExAC TOPMed dbSNP gnomAD |
|
VAR_021073 CA9921910 RCV000966091 RCV000276747 rs28383586 |
60 | M>T | Phosphoenolpyruvate carboxykinase deficiency, cytosolic [ClinVar] | Yes |
ClinGen ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
RCV000317421 rs147273759 CA10652660 RCV002523167 |
68 | R>L | Phosphoenolpyruvate carboxykinase deficiency, cytosolic Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
RCV002523168 RCV000372126 CA9921942 rs139008325 |
76 | W>C | Phosphoenolpyruvate carboxykinase (GTP) deficiency [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
rs28359542 RCV000971974 VAR_021074 CA9922004 RCV001141020 |
138 | T>I | Phosphoenolpyruvate carboxykinase deficiency, cytosolic [ClinVar] | Yes |
ClinGen ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs199822253 RCV001142874 CA9922045 COSM253800 RCV001858935 |
174 | T>M | urinary_tract Phosphoenolpyruvate carboxykinase deficiency, cytosolic [Cosmic, ClinVar] | Yes |
ClinGen cosmic curated ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
CA9922055 rs367998997 RCV000343219 COSM3799695 RCV001861167 |
180 | V>I | Variant assessed as Somatic; 0.0 impact. urinary_tract Phosphoenolpyruvate carboxykinase deficiency, cytosolic [NCI-TCGA, Cosmic, ClinVar] | Yes |
ClinGen cosmic curated ClinVar ESP ExAC NCI-TCGA TOPMed dbSNP gnomAD |
|
VAR_021075 RCV001672595 CA9922057 RCV000990319 rs707555 CA409435221 |
184 | V>L | Phosphoenolpyruvate carboxykinase deficiency, cytosolic [ClinVar] | Yes |
ClinGen ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
RCV000981775 rs11552146 CA9922059 RCV000288848 |
186 | D>N | Phosphoenolpyruvate carboxykinase deficiency, cytosolic [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
RCV001856766 CA9922064 rs139125510 RCV001138125 RCV002556939 |
193 | L>F | Phosphoenolpyruvate carboxykinase deficiency, cytosolic Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
CA316279495 rs139902878 RCV001138127 |
239 | S>L | Variant assessed as Somatic; 0.0 impact. Phosphoenolpyruvate carboxykinase deficiency, cytosolic [NCI-TCGA, ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP NCI-TCGA TOPMed dbSNP gnomAD |
|
RCV002550681 CA9922132 rs373906233 RCV000995596 |
242 | G>R | Phosphoenolpyruvate carboxykinase deficiency, cytosolic [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
RCV001138128 rs763473369 CA9922133 |
245 | C>G | Phosphoenolpyruvate carboxykinase deficiency, cytosolic [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
RCV001723938 RCV000406471 VAR_015575 rs8192708 CA9922170 |
267 | I>V | Phosphoenolpyruvate carboxykinase deficiency, cytosolic [ClinVar] | Yes |
ClinGen ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs748437548 RCV000779351 RCV001824370 |
275 | G>missing | Phosphoenolpyruvate carboxykinase deficiency, cytosolic [ClinVar] | Yes |
ClinVar dbSNP |
|
VAR_021076 RCV000308757 CA9922176 RCV001653640 rs11552145 |
276 | E>K | Phosphoenolpyruvate carboxykinase deficiency, cytosolic [ClinVar] | Yes |
ClinGen ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
RCV002520023 rs61760967 CA9922197 RCV000390763 |
300 | L>F | Phosphoenolpyruvate carboxykinase deficiency, cytosolic [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
CA9922201 CA9922200 RCV001138564 rs200817092 |
302 | G>R | Phosphoenolpyruvate carboxykinase deficiency, cytosolic [ClinVar] | Yes |
ClinGen ESP ExAC TOPMed gnomAD ClinVar dbSNP |
|
RCV001861168 RCV000509043 VAR_079634 CA9922209 COSM1261521 rs201186470 |
309 | G>R | oesophagus Phosphoenolpyruvate carboxykinase deficiency, cytosolic PCKDC; unknown pathological significance; decreased phosphoenolpyruvate carboxykinase activity [Cosmic, ClinVar, UniProt] | Yes |
ClinGen cosmic curated ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
CA9922214 RCV001141126 rs747438321 |
319 | A>T | Variant assessed as Somatic; 0.0 impact. Phosphoenolpyruvate carboxykinase deficiency, cytosolic [NCI-TCGA, ClinVar] | Yes |
ClinGen ClinVar ExAC NCI-TCGA TOPMed dbSNP gnomAD |
|
VAR_021077 CA9922273 RCV002057743 RCV000260817 rs1804160 |
368 | V>I | Phosphoenolpyruvate carboxykinase deficiency, cytosolic [ClinVar] | Yes |
ClinGen ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
RCV000356891 rs368426390 CA10644146 |
403 | N>D | Phosphoenolpyruvate carboxykinase deficiency, cytosolic [ClinVar] | Yes |
ClinGen ClinVar ESP dbSNP |
|
rs149472972 CA9922323 RCV001142974 |
404 | S>L | Phosphoenolpyruvate carboxykinase deficiency, cytosolic [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
| VAR_079635 | 440 | G>del | PCKDC; decreased phosphoenolpyruvate carboxykinase activity [UniProt] | Yes | UniProt |
|
RCV001142976 RCV000960533 CA9922403 rs41302559 |
483 | R>Q | Phosphoenolpyruvate carboxykinase deficiency, cytosolic [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
COSM254889 rs267606016 RCV000261859 CA10602380 |
513 | H>Y | urinary_tract Phosphoenolpyruvate carboxykinase deficiency, cytosolic [Cosmic, ClinVar] | Yes |
ClinGen cosmic curated ClinVar TOPMed dbSNP gnomAD |
|
CA9922421 rs768176085 RCV001142977 |
518 | R>Q | Phosphoenolpyruvate carboxykinase deficiency, cytosolic [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
RCV000321976 CA9922438 RCV000960494 rs148684857 |
548 | A>T | Phosphoenolpyruvate carboxykinase deficiency, cytosolic [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
RCV000267912 rs762446688 CA9922441 |
553 | T>M | Variant assessed as Somatic; 0.0 impact. Phosphoenolpyruvate carboxykinase deficiency, cytosolic [NCI-TCGA, ClinVar] | Yes |
ClinGen ClinVar ExAC NCI-TCGA dbSNP gnomAD |
|
rs1256902604 RCV001138236 CA409437722 |
563 | A>V | Phosphoenolpyruvate carboxykinase deficiency, cytosolic [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
|
CA9922454 rs34103538 RCV000381354 RCV000949099 |
579 | S>R | Phosphoenolpyruvate carboxykinase deficiency, cytosolic [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs773579508 CA409434021 |
6 | Q>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9921872 rs202045983 |
8 | G>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA316277575 rs944002960 |
8 | G>V | No |
ClinGen TOPMed gnomAD |
|
|
rs759779360 CA9921874 |
9 | L>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA316277584 rs954837713 |
10 | N>S | No |
ClinGen TOPMed |
|
|
rs954837713 CA409434065 |
10 | N>T | No |
ClinGen TOPMed |
|
|
CA9921875 rs146652385 |
11 | L>F | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs775667532 CA9921876 |
11 | L>H | No |
ClinGen ExAC gnomAD |
|
|
rs548898026 CA9921878 |
12 | S>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs761860955 CA9921877 |
12 | S>P | No |
ClinGen ExAC gnomAD |
|
|
rs61749691 CA9921880 |
15 | V>F | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
| TCGA novel | 15 | V>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1301087239 CA409434143 |
18 | G>E | No |
ClinGen TOPMed gnomAD |
|
|
CA409434153 rs1405527615 |
19 | S>R | No |
ClinGen TOPMed gnomAD |
|
|
rs1398258655 CA409434166 |
21 | D>E | No |
ClinGen TOPMed gnomAD |
|
|
rs1334117927 CA409434163 |
21 | D>G | No |
ClinGen gnomAD |
|
|
rs1325584679 CA409434160 |
21 | D>H | No |
ClinGen gnomAD |
|
|
rs1325584679 CA409434161 |
21 | D>Y | No |
ClinGen gnomAD |
|
|
CA409434172 rs1280296599 |
22 | S>R | No |
ClinGen gnomAD |
|
|
rs754595324 CA9921883 |
23 | L>P | No |
ClinGen ExAC gnomAD |
|
|
CA9921886 rs756617885 |
24 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1291553333 CA409434185 |
25 | Q>* | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 28 | R>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs749787404 CA9921888 |
31 | L>R | No |
ClinGen ExAC gnomAD |
|
|
CA409434231 rs779302768 |
32 | E>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs557851089 CA9921891 |
32 | E>G | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA9921890 rs779302768 |
32 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9921892 rs772368340 |
33 | N>K | No |
ClinGen ExAC gnomAD |
|
|
CA9921893 rs200771350 |
34 | N>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs768856249 CA9921895 |
35 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA316277671 rs768856249 |
35 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA409434254 rs1384436537 |
35 | A>V | No |
ClinGen gnomAD |
|
|
rs762929030 CA9921897 |
36 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs1394259521 CA409434268 |
38 | C>R | No |
ClinGen gnomAD |
|
|
CA316277699 rs6128079 |
40 | P>L | No |
ClinGen Ensembl |
|
|
rs6128079 CA409434286 |
40 | P>R | No |
ClinGen Ensembl |
|
|
rs1004704491 CA316277694 |
40 | P>T | No |
ClinGen Ensembl |
|
|
rs111327069 CA316277706 |
41 | D>G | No |
ClinGen Ensembl |
|
|
CA9921898 rs148380007 |
41 | D>N | No |
ClinGen 1000Genomes ESP ExAC gnomAD |
|
|
CA409434297 rs1329652569 |
42 | H>L | No |
ClinGen gnomAD |
|
|
rs751329147 CA9921899 |
42 | H>N | No |
ClinGen ExAC |
|
|
CA9921901 rs767089672 |
43 | I>V | No |
ClinGen ExAC gnomAD |
|
|
rs144360449 CA9921902 |
44 | H>R | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs777314725 CA9921904 |
46 | C>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9921906 rs542465770 |
48 | G>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1238296849 CA409434351 |
50 | E>D | No |
ClinGen gnomAD |
|
|
CA316277749 rs1011110192 COSM1533936 |
52 | E>D | lung [Cosmic] | No |
ClinGen cosmic curated TOPMed gnomAD |
|
rs893537181 CA316277748 |
52 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
| rs1194696584 | 52 | E>missing | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs28383585 CA9921908 VAR_021072 |
55 | R>Q | No |
ClinGen UniProt 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
|
CA9921907 COSM1028388 rs373529977 |
55 | R>W | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA316277755 rs193008342 |
56 | L>P | No |
ClinGen 1000Genomes |
|
|
rs1392559512 CA409434398 |
58 | G>A | No |
ClinGen TOPMed |
|
|
rs1189382908 CA409434396 |
58 | G>R | No |
ClinGen gnomAD |
|
|
rs1462472069 CA409434416 |
61 | E>K | No |
ClinGen TOPMed |
|
|
CA9921911 rs747223260 |
62 | E>D | No |
ClinGen ExAC gnomAD |
|
|
rs768909401 CA9921912 |
64 | G>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs768909401 CA409434442 |
64 | G>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs200152114 CA409434445 |
65 | I>F | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs991179342 CA316277788 |
65 | I>T | No |
ClinGen Ensembl |
|
|
rs200152114 CA9921913 |
65 | I>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs147273759 CA9921916 |
68 | R>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9921915 COSM3799694 rs369101907 |
68 | R>W | Variant assessed as Somatic; 0.0 impact. urinary_tract [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA409434469 rs1405681647 |
70 | K>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA9921918 rs767286091 |
71 | K>N | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 71 | K>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs977565806 CA316277810 |
72 | Y>* | No |
ClinGen Ensembl |
|
|
rs1221803831 CA409434498 |
73 | D>E | No |
ClinGen TOPMed |
|
|
CA409434499 rs1349692419 |
74 | N>D | No |
ClinGen TOPMed |
|
|
COSM1681789 rs775170603 CA409434511 |
75 | C>F | lung [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA409434525 rs1157282768 |
75 | C>W | No |
ClinGen gnomAD |
|
|
CA9921919 rs775170603 |
75 | C>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs139008325 CA9921943 |
76 | W>* | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA409434531 rs1600706208 |
76 | W>L | No |
ClinGen Ensembl |
|
|
CA409434539 rs1420632105 |
77 | L>F | No |
ClinGen gnomAD |
|
|
rs1360980675 CA409434557 |
80 | T>I | No |
ClinGen gnomAD |
|
|
CA9921947 rs755169252 CA409434576 |
83 | R>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs376452415 CA9921946 |
83 | R>T | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs267606015 CA9921950 |
89 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
| TCGA novel | 90 | S>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA9921951 rs149718395 |
92 | T>K | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA9921952 rs149718395 |
92 | T>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs149718395 CA316278253 |
92 | T>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA9921954 rs779834833 |
93 | V>I | No |
ClinGen ExAC gnomAD |
|
|
rs536299130 CA9921956 |
95 | V>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
CA9921957 rs776407163 |
96 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1489833023 CA409434656 |
96 | T>S | No |
ClinGen TOPMed gnomAD |
|
|
CA409434706 rs1216729199 |
103 | V>L | No |
ClinGen TOPMed |
|
|
CA9921962 rs766936971 |
104 | P>S | No |
ClinGen ExAC gnomAD |
|
|
CA409434715 rs1440586457 |
105 | I>L | No |
ClinGen gnomAD |
|
|
CA409434726 rs1383834419 |
106 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
CA9921964 rs760002281 |
107 | K>E | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 107 | K>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 108 | T>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs767751310 CA9921965 |
109 | G>S | No |
ClinGen ExAC gnomAD |
|
|
CA409434748 rs1295975416 |
110 | L>F | No |
ClinGen gnomAD |
|
|
CA9921967 rs756249268 |
114 | G>S | No |
ClinGen ExAC gnomAD |
|
|
rs184086519 COSM4164768 CA9921968 |
115 | R>H | kidney [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC TOPMed gnomAD |
|
CA409434787 rs1357097418 |
116 | W>* | No |
ClinGen gnomAD |
|
|
rs753854018 CA9921969 |
117 | M>I | No |
ClinGen ExAC gnomAD |
|
|
CA409434808 rs1161582719 |
119 | E>K | No |
ClinGen gnomAD |
|
|
rs758332173 CA9921970 |
119 | E>V | No |
ClinGen ExAC gnomAD |
|
|
CA409434829 rs1304006621 |
121 | D>E | No |
ClinGen TOPMed |
|
|
rs1202483843 CA409434826 |
121 | D>G | No |
ClinGen gnomAD |
|
|
CA409434849 rs1390250073 |
124 | K>T | No |
ClinGen gnomAD |
|
|
rs373113903 CA409434854 |
125 | A>P | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs373113903 CA9921972 |
125 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs768548800 CA9921973 |
125 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9921975 rs747868874 |
127 | N>D | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 128 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1171365893 CA409434896 |
131 | P>S | No |
ClinGen TOPMed |
|
|
rs1167673607 CA409434911 |
133 | C>F | No |
ClinGen gnomAD |
|
|
rs772863724 CA9921977 |
134 | M>T | No |
ClinGen ExAC |
|
|
CA409434914 rs1398991584 |
134 | M>V | No |
ClinGen gnomAD |
|
|
CA9922002 rs141813623 |
137 | R>C | No |
ClinGen ESP ExAC gnomAD |
|
|
rs150560473 COSM578044 CA9922003 |
137 | R>H | pancreas [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ESP ExAC TOPMed gnomAD |
|
rs754957616 CA9922007 |
139 | M>I | No |
ClinGen ExAC gnomAD |
|
|
rs750424968 CA409434960 |
139 | M>K | No |
ClinGen ExAC TOPMed |
|
|
CA9922006 rs750424968 |
139 | M>T | No |
ClinGen ExAC TOPMed |
|
|
rs1005296621 CA316278792 |
141 | V>A | No |
ClinGen Ensembl |
|
|
CA409434972 rs752677950 |
141 | V>F | No |
ClinGen ExAC gnomAD |
|
|
rs752677950 CA9922009 |
141 | V>I | No |
ClinGen ExAC gnomAD |
|
|
rs1390925507 CA409435005 |
146 | M>L | No |
ClinGen TOPMed |
|
|
rs777678315 CA9922011 |
146 | M>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs771118313 CA316278829 |
147 | G>R | No |
ClinGen Ensembl |
|
|
rs756920795 CA9922013 |
148 | P>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
| TCGA novel | 148 | P>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs748977083 CA9922012 |
148 | P>T | No |
ClinGen ExAC gnomAD |
|
|
CA9922016 rs771603187 |
151 | S>L | No |
ClinGen ExAC gnomAD |
|
|
CA9922015 rs745305712 |
151 | S>T | No |
ClinGen ExAC gnomAD |
|
|
CA409435042 rs1335000207 |
152 | P>L | No |
ClinGen TOPMed |
|
|
CA409435046 rs1276772072 |
153 | L>P | No |
ClinGen TOPMed gnomAD |
|
|
CA409435050 rs1600706720 |
154 | S>A | No |
ClinGen Ensembl |
|
|
CA9922018 rs747489666 |
154 | S>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs776943310 CA9922020 |
155 | K>E | No |
ClinGen ExAC gnomAD |
|
|
CA9922021 rs762049585 |
155 | K>R | No |
ClinGen ExAC gnomAD |
|
|
rs149873355 CA9922022 |
156 | I>F | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9922025 rs144907840 |
156 | I>M | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA9922023 rs145580276 |
156 | I>N | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA409435060 rs149873355 |
156 | I>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs866524390 CA316278862 |
157 | G>D | No |
ClinGen TOPMed |
|
|
CA9922026 rs752732225 COSM1028390 |
157 | G>S | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
rs866524390 CA409435066 |
157 | G>V | No |
ClinGen TOPMed |
|
|
CA9922029 rs764002893 |
158 | I>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9922027 rs756073673 |
158 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA9922031 rs778493492 |
159 | E>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA316278902 COSM1713715 rs778493492 |
159 | E>K | Variant assessed as Somatic; 0.0 impact. skin [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA409435087 rs149006114 |
161 | T>K | No |
ClinGen ESP TOPMed gnomAD |
|
|
CA316278915 COSM1412685 rs149006114 |
161 | T>M | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP NCI-TCGA TOPMed gnomAD |
|
rs1600706807 CA409435085 |
161 | T>S | No |
ClinGen Ensembl |
|
|
CA409435090 rs1280567586 |
162 | D>Y | No |
ClinGen TOPMed |
|
|
rs960583607 CA316278929 |
163 | S>L | No |
ClinGen TOPMed gnomAD |
|
|
rs1387377616 CA409435103 |
164 | P>S | No |
ClinGen gnomAD |
|
|
CA9922036 rs769106289 |
166 | V>E | No |
ClinGen ExAC gnomAD |
|
|
rs368269624 CA409435115 |
166 | V>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
COSM2153160 rs368269624 CA9922035 |
166 | V>M | Variant assessed as Somatic; 0.0 impact. central_nervous_system [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA409435119 rs748446228 |
167 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs748446228 CA9922038 |
167 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1264845362 CA409435128 |
168 | A>V | No |
ClinGen gnomAD |
|
|
CA409435133 rs1342768636 |
169 | S>N | No |
ClinGen TOPMed gnomAD |
|
|
rs1244247754 CA409435141 |
170 | M>R | No |
ClinGen gnomAD |
|
|
CA9922042 rs375564832 |
171 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs770190877 CA9922040 |
171 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs774522183 CA316278968 |
172 | I>M | No |
ClinGen ExAC gnomAD |
|
|
CA409435171 rs761566552 COSM1681790 |
175 | R>L | kidney [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
rs761566552 CA9922049 |
175 | R>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs761566552 CA9922048 |
175 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9922047 rs753818713 |
175 | R>W | No |
ClinGen ExAC gnomAD |
|
|
CA409435176 rs1279102847 |
176 | M>T | No |
ClinGen TOPMed |
|
|
rs1445934363 CA409435184 |
177 | G>D | No |
ClinGen TOPMed |
|
|
rs758033067 CA409435190 |
178 | T>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs758033067 CA9922052 |
178 | T>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs373884006 CA316279006 |
179 | P>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs373884006 CA409435192 |
179 | P>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9922053 rs373884006 COSM355156 |
179 | P>T | lung [Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD |
|
rs367998997 CA409435196 |
180 | V>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1568908556 CA409435209 |
182 | E>G | No |
ClinGen Ensembl |
|
| TCGA novel | 183 | A>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1312507533 CA409435214 |
183 | A>T | No |
ClinGen gnomAD |
|
|
CA9922058 rs371728787 |
185 | G>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs749492662 CA9922060 |
186 | D>G | No |
ClinGen ExAC gnomAD |
|
|
rs1224037261 CA409435239 |
187 | G>E | No |
ClinGen TOPMed |
|
|
CA409435258 rs1283838888 |
190 | V>I | No |
ClinGen TOPMed |
|
|
rs759753630 CA9922063 |
191 | K>Q | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 191 | K>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA9922065 rs139125510 |
193 | L>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9922066 rs141485103 |
194 | H>Q | No |
ClinGen ESP ExAC TOPMed |
|
|
CA409435287 rs1424340769 |
194 | H>R | No |
ClinGen gnomAD |
|
|
CA409435291 rs1311305002 |
195 | S>A | No |
ClinGen TOPMed |
|
|
CA9922067 rs374694652 |
196 | V>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA409435304 rs1366641082 |
197 | G>A | No |
ClinGen TOPMed |
|
|
CA316279090 rs1056292955 |
198 | C>R | No |
ClinGen Ensembl |
|
|
CA9922068 rs750185572 |
198 | C>Y | No |
ClinGen ExAC gnomAD |
|
|
rs762530982 CA9922069 |
199 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA |
|
CA409435324 rs1468389269 |
201 | P>A | No |
ClinGen gnomAD |
|
|
CA409435332 rs1343007370 |
202 | L>S | No |
ClinGen TOPMed |
|
|
CA9922105 rs770754264 |
204 | K>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs749159373 CA9922104 |
204 | K>R | No |
ClinGen ExAC gnomAD |
|
|
rs774094154 CA9922107 |
205 | P>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed |
|
CA9922106 rs774094154 |
205 | P>R | No |
ClinGen ExAC TOPMed |
|
|
CA9922109 rs775000152 |
208 | N>K | No |
ClinGen ExAC gnomAD |
|
|
CA9922110 rs760290328 |
209 | N>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs763484889 CA409435399 |
211 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs763484889 CA9922111 |
211 | P>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs150402740 CA9922112 |
212 | C>* | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1600707098 CA409435413 |
213 | N>T | No |
ClinGen Ensembl |
|
|
rs765716997 CA9922114 |
214 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9922113 rs762366213 |
214 | P>S | No |
ClinGen ExAC gnomAD |
|
|
CA9922116 rs377150721 |
217 | T>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9922119 rs755135303 |
220 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA |
|
CA409435465 rs1568908841 |
221 | H>Q | No |
ClinGen Ensembl |
|
|
rs1424827116 CA409435460 |
221 | H>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs781101554 CA9922120 |
222 | L>R | No |
ClinGen ExAC gnomAD |
|
|
CA316279461 rs6092497 |
223 | P>L | No |
ClinGen Ensembl |
|
| TCGA novel | 223 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA9922122 rs770807520 |
225 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA316279462 rs770807520 |
225 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9922123 rs369153854 |
225 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA409435485 rs369153854 |
225 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1349890290 CA409435486 |
226 | R>G | No |
ClinGen gnomAD |
|
|
rs1462558793 CA409435488 |
226 | R>K | No |
ClinGen gnomAD |
|
|
CA409435489 rs1462558793 |
226 | R>T | No |
ClinGen gnomAD |
|
|
CA9922124 rs745728357 |
227 | E>K | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 228 | I>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA9922126 rs775253048 |
233 | S>N | No |
ClinGen ExAC gnomAD |
|
|
CA316279472 rs938359858 |
236 | G>S | No |
ClinGen TOPMed gnomAD |
|
|
CA409435562 rs1415908197 |
237 | G>E | No |
ClinGen TOPMed |
|
|
CA9922129 rs775952976 |
237 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs983640947 CA316279493 |
238 | N>D | No |
ClinGen gnomAD |
|
|
rs1187137010 CA409435573 |
239 | S>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
rs1185656022 CA409435590 |
242 | G>E | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
|
CA9922134 rs763473369 |
245 | C>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1600707192 CA409435631 |
248 | L>F | No |
ClinGen Ensembl |
|
|
rs781356801 CA9922137 |
249 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA409435647 rs756180362 CA9922139 |
250 | M>I | No |
ClinGen ExAC gnomAD |
|
|
rs1568908939 CA409435643 |
250 | M>L | No |
ClinGen Ensembl |
|
|
CA9922140 rs778879335 |
252 | S>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs771938481 CA409435664 |
253 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9922142 rs771938481 |
253 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA9922141 rs201972484 |
253 | R>W | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA409435677 rs1357261237 |
256 | K>E | No |
ClinGen gnomAD |
|
|
CA409435702 rs1277594597 |
259 | G>E | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA9922143 rs779670565 |
259 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9922144 rs746694146 |
260 | W>* | No |
ClinGen ExAC gnomAD |
|
|
rs1162862797 CA409435710 |
260 | W>C | No |
ClinGen TOPMed |
|
|
CA409435707 rs1223456028 |
260 | W>G | No |
ClinGen gnomAD |
|
|
rs1045010083 CA316279601 |
261 | L>P | No |
ClinGen Ensembl |
|
|
rs1600707234 CA409435721 |
262 | A>G | No |
ClinGen Ensembl |
|
|
rs1442268105 CA409435736 |
264 | H>L | No |
ClinGen gnomAD |
|
|
CA409435733 rs1276770257 |
264 | H>Y | No |
ClinGen gnomAD |
|
|
CA9922148 rs769418607 |
265 | M>I | No |
ClinGen ExAC gnomAD |
|
|
CA9922147 rs141761035 |
265 | M>T | No |
ClinGen ESP ExAC TOPMed |
|
|
CA9922146 rs200745451 |
265 | M>V | No |
ClinGen 1000Genomes ExAC |
|
|
rs772810175 CA9922171 |
268 | L>R | No |
ClinGen ExAC gnomAD |
|
|
CA409435769 rs1158038081 |
268 | L>V | No |
ClinGen gnomAD |
|
|
rs749825944 CA9922172 |
270 | I>V | No |
ClinGen ExAC gnomAD |
|
|
rs1012516112 CA316279960 |
271 | T>N | No |
ClinGen TOPMed gnomAD |
|
|
CA409435794 rs774915631 CA9922174 |
272 | N>K | No |
ClinGen ExAC gnomAD |
|
|
CA9922173 rs558731216 |
272 | N>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1306089208 CA409435798 |
273 | P>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs1188847786 CA409435797 |
273 | P>T | No |
ClinGen TOPMed |
|
|
rs1444690698 CA409435804 |
274 | E>G | No |
ClinGen TOPMed |
|
| TCGA novel | 274 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA316279974 rs369202361 |
275 | G>S | No |
ClinGen ESP TOPMed gnomAD |
|
|
CA316279980 rs371044564 |
277 | K>N | No |
ClinGen ExAC TOPMed |
|
|
CA9922178 rs775729245 |
280 | L>V | No |
ClinGen ExAC gnomAD |
|
|
CA409435852 rs200991428 |
281 | A>G | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 281 | A>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
COSM1261522 rs200991428 CA9922179 |
281 | A>V | Variant assessed as Somatic; 0.0 impact. oesophagus [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
rs753855895 CA9922181 |
282 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs758358426 CA9922182 |
282 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA316280009 rs574265290 |
283 | A>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA9922184 rs574265290 |
283 | A>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA9922185 rs754779680 |
283 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs752608038 CA316280027 |
284 | F>S | No |
ClinGen Ensembl |
|
| TCGA novel | 285 | P>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs150928523 CA409435879 |
286 | S>R | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
COSM578041 CA9922188 rs747837917 |
287 | A>S | lung Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
CA9922187 rs747837917 |
287 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA409435892 rs61760966 |
288 | C>W | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA9922190 rs748682003 |
289 | G>R | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA409435907 rs1310396080 |
291 | T>S | No |
ClinGen gnomAD |
|
|
CA409435918 rs1243174353 |
292 | N>K | No |
ClinGen gnomAD |
|
|
CA409435916 rs1568909260 |
292 | N>S | No |
ClinGen Ensembl |
|
|
CA9922194 rs772452343 |
294 | A>D | No |
ClinGen ExAC gnomAD |
|
|
rs1163275323 CA409435927 |
294 | A>S | No |
ClinGen TOPMed |
|
|
rs545773547 CA9922195 CA409435936 |
295 | M>I | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA409435935 rs1236833914 |
295 | M>R | No |
ClinGen TOPMed |
|
|
rs147749756 CA9922196 |
296 | M>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9922202 rs759511459 |
303 | W>* | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA409435986 rs1185413351 |
303 | W>* | No |
ClinGen gnomAD |
|
|
rs767446111 CA9922203 |
304 | K>E | No |
ClinGen ExAC gnomAD |
|
|
rs752486702 CA9922204 |
305 | V>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9922205 rs201677393 |
306 | E>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9922206 rs777624810 |
307 | C>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs777624810 CA409436010 |
307 | C>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs45603039 CA9922207 |
308 | V>I | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs866799714 CA316280182 |
309 | G>K | No |
ClinGen Ensembl |
|
| TCGA novel | 311 | D>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs746384406 CA9922210 |
313 | A>S | No |
ClinGen ExAC gnomAD |
|
|
rs866379995 CA316280195 |
314 | W>* | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs1425979888 CA409436057 |
314 | W>R | No |
ClinGen TOPMed |
|
|
CA9922211 rs772509055 |
315 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1410815147 CA409436101 |
320 | Q>E | No |
ClinGen TOPMed |
|
|
rs1189769474 CA409436106 |
320 | Q>H | No |
ClinGen TOPMed |
|
|
rs768997627 CA9922215 |
321 | G>C | No |
ClinGen ExAC |
|
|
rs1393505094 CA409436140 |
324 | R>K | No |
ClinGen TOPMed |
|
|
COSM109229 rs148387840 CA316280575 |
325 | A>V | skin [Cosmic] | No |
ClinGen cosmic curated Ensembl |
|
CA409436167 rs1198614575 |
328 | P>S | No |
ClinGen gnomAD |
|
|
rs1320336027 CA409436175 |
329 | E>G | No |
ClinGen gnomAD |
|
|
rs1396000578 CA409436188 |
331 | G>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
COSM724064 rs771109436 CA409436206 |
333 | F>L | lung [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
rs749448028 COSM724064 CA9922237 |
333 | F>L | lung Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
CA409436203 rs1157444307 |
333 | F>Y | No |
ClinGen gnomAD |
|
|
rs775605946 CA9922239 |
334 | G>S | No |
ClinGen ExAC gnomAD |
|
|
CA316280596 rs893585457 |
334 | G>V | No |
ClinGen Ensembl |
|
|
COSM2764408 rs574426927 CA9922241 |
336 | A>T | Variant assessed as Somatic; 0.0 impact. central_nervous_system [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
CA9922243 rs148953365 |
337 | P>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1600707832 CA409436228 |
338 | G>R | No |
ClinGen Ensembl |
|
|
CA9922245 rs750062061 |
339 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA409436247 rs1239154126 |
341 | V>L | No |
ClinGen Ensembl |
|
|
CA409436257 rs757954228 |
342 | K>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs553589410 CA9922248 |
344 | N>K | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs533717610 CA9922247 |
344 | N>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1216622701 CA409436276 |
345 | P>L | No |
ClinGen gnomAD |
|
|
CA9922249 rs755464479 |
346 | N>D | No |
ClinGen ExAC gnomAD |
|
|
CA9922250 rs781427561 |
347 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA316280621 rs777444169 |
347 | A>V | No |
ClinGen Ensembl |
|
|
CA9922252 rs756433428 |
348 | I>F | No |
ClinGen ExAC gnomAD |
|
|
CA409436293 rs1455891265 |
348 | I>M | No |
ClinGen gnomAD |
|
|
rs576636213 CA9922253 |
349 | K>N | No |
ClinGen 1000Genomes ExAC gnomAD |
|
| TCGA novel | 349 | K>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA9922256 rs771162629 |
352 | Q>K | No |
ClinGen ExAC gnomAD |
|
|
CA409436332 rs1159209007 |
354 | N>T | No |
ClinGen gnomAD |
|
|
CA9922257 rs143715557 |
355 | T>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9922258 rs746953160 |
356 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA9922259 rs545533074 |
358 | T>A | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1476671696 CA409436377 |
361 | A>P | No |
ClinGen gnomAD |
|
|
rs368785323 COSM1028400 CA316280681 |
362 | E>K | Variant assessed as Somatic; impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP NCI-TCGA TOPMed |
|
rs1376085806 CA409436391 |
363 | T>N | No |
ClinGen gnomAD |
|
|
rs562622556 CA9922263 |
364 | S>C | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA9922262 rs562622556 |
364 | S>G | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs185439146 CA9922265 CA9922264 |
364 | S>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA409436401 rs1244133567 |
365 | D>G | No |
ClinGen gnomAD |
|
|
CA9922266 rs751016777 COSM1713716 |
365 | D>N | skin [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
CA9922268 rs148075029 |
366 | G>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9922269 rs753133356 |
366 | G>V | No |
ClinGen ExAC gnomAD |
|
|
CA9922270 rs756539195 |
367 | G>C | No |
ClinGen ExAC gnomAD |
|
|
CA9922271 rs778239411 |
367 | G>D | No |
ClinGen ExAC gnomAD |
|
|
CA316280752 rs973853096 |
369 | Y>* | No |
ClinGen gnomAD |
|
|
rs746027185 CA9922275 |
369 | Y>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA409436446 rs1465588549 |
372 | G>D | No |
ClinGen gnomAD |
|
|
CA409436442 rs1462643994 |
372 | G>R | No |
ClinGen gnomAD |
|
|
rs772030034 CA9922276 |
373 | I>S | No |
ClinGen ExAC gnomAD |
|
|
rs772030034 CA9922277 |
373 | I>T | No |
ClinGen ExAC gnomAD |
|
|
CA409436452 rs1298925180 |
374 | D>N | No |
ClinGen gnomAD |
|
|
CA409436461 rs1600707936 |
375 | E>Q | No |
ClinGen Ensembl |
|
|
rs144845374 CA9922280 |
376 | P>L | No |
ClinGen ESP ExAC gnomAD |
|
|
CA9922283 rs376361752 |
380 | G>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA409436498 rs1207035390 |
381 | V>A | No |
ClinGen gnomAD |
|
|
COSM1028402 CA9922285 rs766917599 |
381 | V>I | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA9922286 rs369625007 |
383 | I>F | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs745989703 CA316280789 |
383 | I>N | No |
ClinGen TOPMed gnomAD |
|
|
CA409436507 rs369625007 |
383 | I>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1186627076 CA409436516 |
384 | T>M | No |
ClinGen TOPMed gnomAD |
|
|
rs1487687043 CA409436522 |
385 | S>F | No |
ClinGen TOPMed |
|
|
CA9922289 rs754185331 |
386 | W>* | No |
ClinGen ExAC gnomAD |
|
|
rs764562797 CA9922288 |
386 | W>R | No |
ClinGen ExAC gnomAD |
|
|
CA409436543 rs1418324682 |
388 | N>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs757690926 CA9922290 |
390 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA409436566 rs1357380469 |
391 | W>C | No |
ClinGen gnomAD |
|
|
rs779335003 CA9922291 |
391 | W>R | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 392 | S>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA409436590 rs1433961209 |
394 | E>D | No |
ClinGen TOPMed gnomAD |
|
|
rs1224527562 CA409436583 |
394 | E>K | No |
ClinGen TOPMed |
|
|
rs750586126 CA9922292 |
395 | D>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA409436591 rs1313564970 |
395 | D>N | No |
ClinGen gnomAD |
|
|
CA409436620 rs1338587290 |
397 | E>D | No |
ClinGen TOPMed |
|
|
rs376297762 CA409436623 |
398 | P>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs778520298 CA9922318 |
398 | P>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs778520298 CA9922317 |
398 | P>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs376297762 CA9922316 |
398 | P>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs771553762 CA9922319 |
399 | C>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA409436635 rs146241929 |
400 | A>D | No |
ClinGen ESP gnomAD |
|
|
rs146241929 CA316280982 |
400 | A>V | No |
ClinGen ESP gnomAD |
|
|
CA409436640 rs1193991455 |
401 | H>P | No |
ClinGen gnomAD |
|
|
rs1193991455 CA409436641 |
401 | H>R | No |
ClinGen gnomAD |
|
|
CA9922321 rs142010387 |
403 | N>K | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA9922322 rs768259677 |
404 | S>A | No |
ClinGen ExAC gnomAD |
|
|
CA409436666 rs1600708096 |
405 | R>S | No |
ClinGen Ensembl |
|
|
CA9922326 rs765721123 |
406 | F>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1439030055 CA409436686 |
408 | T>N | No |
ClinGen gnomAD |
|
|
rs763241947 CA9922327 |
408 | T>P | No |
ClinGen ExAC gnomAD |
|
|
rs766581079 CA9922328 |
409 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs1568909904 CA409436689 |
409 | P>T | No |
ClinGen Ensembl |
|
|
CA9922329 rs751797494 |
411 | S>R | No |
ClinGen ExAC gnomAD |
|
|
CA316281044 rs935836462 |
412 | Q>* | No |
ClinGen TOPMed |
|
|
rs767556020 CA409436719 |
413 | C>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA409436725 rs1280643956 |
414 | P>R | No |
ClinGen gnomAD |
|
|
CA409436730 rs1367496165 |
415 | I>N | No |
ClinGen TOPMed gnomAD |
|
|
rs1367496165 CA409436732 |
415 | I>S | No |
ClinGen TOPMed gnomAD |
|
|
CA9922332 rs569350822 |
416 | I>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA9922333 rs143952631 |
417 | D>V | No |
ClinGen ESP ExAC gnomAD |
|
|
rs537836747 CA316281093 |
418 | A>S | No |
ClinGen 1000Genomes |
|
|
CA409436751 rs1270924804 |
418 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA409436757 rs1355790198 |
419 | A>V | No |
ClinGen TOPMed |
|
|
rs1214113189 CA409436759 |
420 | W>R | No |
ClinGen gnomAD |
|
|
rs1314250003 CA409436769 COSM374803 |
421 | E>* | lung [Cosmic] | No |
ClinGen cosmic curated TOPMed |
|
rs148603002 CA9922335 |
423 | P>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1254579379 CA409436783 |
423 | P>S | No |
ClinGen gnomAD |
|
|
CA409436794 rs1364289010 |
425 | G>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1471222759 CA409436800 |
426 | V>I | No |
ClinGen gnomAD |
|
|
rs28359550 RCV000966287 VAR_021078 CA9922337 |
427 | P>S | No |
ClinGen ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs950094023 CA316281105 |
428 | I>V | No |
ClinGen gnomAD |
|
|
rs1219103803 CA409436830 |
430 | G>V | No |
ClinGen gnomAD |
|
|
CA316281108 rs901420260 |
432 | I>M | No |
ClinGen TOPMed |
|
|
rs147359920 CA316281110 |
433 | F>S | No |
ClinGen ESP TOPMed |
|
|
CA9922338 rs141020523 |
435 | G>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9922340 rs200480357 |
436 | R>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9922341 rs112632361 |
436 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
COSM3963705 CA409436878 rs1338015823 |
438 | P>H | lung [Cosmic] | No |
ClinGen cosmic curated gnomAD |
|
rs770133234 CA9922342 |
439 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs773766733 CA9922343 |
439 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA9922365 rs151290242 |
440 | G>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9922364 rs151290242 |
440 | G>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1600708390 CA409436909 |
442 | P>R | No |
ClinGen Ensembl |
|
|
CA9922367 rs749773218 |
444 | V>L | No |
ClinGen ExAC gnomAD |
|
|
rs1194361076 CA409436942 |
447 | A>V | No |
ClinGen gnomAD |
|
|
rs771234718 CA9922368 |
448 | L>P | No |
ClinGen ExAC gnomAD |
|
|
rs150001707 CA409436976 |
452 | H>P | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9922369 rs150001707 |
452 | H>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs759756341 CA9922370 |
453 | G>A | Variant assessed as Somatic; 4.619e-05 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA9922372 rs368610566 |
456 | V>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs760715742 CA9922373 |
457 | G>E | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 458 | A>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA9922374 rs372883844 |
458 | A>T | No |
ClinGen ESP ExAC |
|
|
CA9922375 rs370747699 |
458 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA9922377 rs766102409 |
459 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs751333880 CA9922378 |
460 | M>L | No |
ClinGen ExAC gnomAD |
|
|
rs1348451524 CA409437029 |
461 | R>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA9922379 rs754818871 |
462 | S>* | No |
ClinGen ExAC gnomAD |
|
|
CA9922380 rs376043660 |
463 | E>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1485583612 CA409437050 COSM218632 |
464 | A>V | pancreas [Cosmic] | No |
ClinGen cosmic curated gnomAD |
| TCGA novel | 466 | A>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs548285338 CA9922382 |
466 | A>E | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA9922381 rs548285338 |
466 | A>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
| TCGA novel | 467 | A>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA409437061 rs1358012223 |
467 | A>T | No |
ClinGen gnomAD |
|
|
rs1600708441 CA409437070 |
468 | A>G | No |
ClinGen Ensembl |
|
|
rs373827777 CA9922385 |
468 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 471 | K>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs965842269 CA316282088 |
472 | G>D | No |
ClinGen TOPMed |
|
|
CA316281756 rs1001912906 |
472 | G>S | No |
ClinGen TOPMed |
|
| TCGA novel | 473 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1159139755 CA409437112 |
473 | K>Q | No |
ClinGen gnomAD |
|
| TCGA novel | 474 | I>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA9922399 rs767392624 |
474 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA409437156 rs1446861074 |
478 | D>E | No |
ClinGen TOPMed |
|
|
CA9922401 rs755746992 |
479 | P>L | Variant assessed as Somatic; 4.621e-05 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA409437160 rs1207210140 |
479 | P>S | No |
ClinGen TOPMed |
|
| TCGA novel | 481 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs763513290 CA9922402 |
483 | R>W | No |
ClinGen ExAC gnomAD |
|
|
CA9922404 rs756706610 |
484 | P>T | No |
ClinGen ExAC gnomAD |
|
|
CA9922405 rs377174792 |
485 | F>I | No |
ClinGen ESP ExAC gnomAD |
|
|
CA9922407 rs555506747 |
489 | N>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs374878290 CA9922409 |
491 | G>S | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1430110939 CA409437242 |
491 | G>V | No |
ClinGen TOPMed |
|
|
rs1337464300 CA409437253 |
493 | Y>H | No |
ClinGen gnomAD |
|
|
CA9922411 rs554489884 |
495 | A>D | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs748319385 CA9922412 |
496 | H>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA409437279 rs1177287592 |
497 | W>* | No |
ClinGen gnomAD |
|
|
rs907101906 CA316282220 |
497 | W>C | No |
ClinGen Ensembl |
|
|
CA409437318 rs774473179 |
502 | Q>H | No |
ClinGen ExAC gnomAD |
|
|
CA9922413 rs769973857 |
502 | Q>R | No |
ClinGen ExAC gnomAD |
|
|
CA409437324 rs1600708598 |
503 | H>R | No |
ClinGen Ensembl |
|
|
CA9922415 rs759509387 |
503 | H>Y | No |
ClinGen ExAC gnomAD |
|
|
CA409437328 rs1406909923 |
504 | P>S | No |
ClinGen gnomAD |
|
|
CA409437337 rs1353877376 |
505 | A>G | No |
ClinGen gnomAD |
|
|
CA409437355 rs1309774756 |
508 | L>Q | No |
ClinGen gnomAD |
|
|
rs1353709008 CA409437367 |
510 | K>R | No |
ClinGen gnomAD |
|
|
rs140394821 CA316282239 |
511 | I>F | No |
ClinGen ESP gnomAD |
|
|
rs1294175849 CA409437374 |
511 | I>N | No |
ClinGen gnomAD |
|
|
CA409437383 rs1213200017 |
512 | F>S | No |
ClinGen gnomAD |
|
|
CA9922418 rs760379277 |
513 | H>Q | No |
ClinGen ExAC gnomAD |
|
|
CA9922419 rs763861186 |
515 | N>T | No |
ClinGen ExAC gnomAD |
|
|
rs1278787584 CA409437408 |
516 | W>L | No |
ClinGen TOPMed gnomAD |
|
|
CA9922420 rs753407393 |
518 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs1473544189 CA409437439 |
520 | D>E | No |
ClinGen TOPMed gnomAD |
|
|
CA409437433 rs1257814791 |
520 | D>N | No |
ClinGen gnomAD |
|
|
CA409437443 rs1460259205 |
521 | K>E | No |
ClinGen TOPMed |
|
|
rs918852913 CA409437456 |
522 | E>D | No |
ClinGen TOPMed |
|
|
CA409437454 rs1242984982 |
522 | E>V | No |
ClinGen TOPMed |
|
|
rs950208003 CA316282273 |
525 | F>S | No |
ClinGen TOPMed gnomAD |
|
|
rs546079074 CA9922425 |
526 | L>F | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1434213118 CA409437485 |
527 | W>R | No |
ClinGen gnomAD |
|
|
rs145570510 CA9922426 |
528 | P>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1230588518 COSM256089 CA409437502 |
529 | G>V | large_intestine Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA TOPMed |
|
rs200656485 CA9922428 |
530 | F>L | No |
ClinGen ExAC gnomAD |
|
|
CA9922429 rs748289347 |
531 | G>E | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 531 | G>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 532 | E>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA316282312 rs536650413 |
532 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
|
rs1314022576 CA409437515 |
532 | E>K | No |
ClinGen TOPMed |
|
| TCGA novel | 535 | R>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA409437555 rs1360481396 |
538 | E>Q | No |
ClinGen TOPMed |
|
|
CA409437576 rs1347732049 |
540 | M>I | No |
ClinGen gnomAD |
|
|
rs377429546 CA9922430 |
540 | M>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1600708684 CA409437588 |
542 | N>D | No |
ClinGen Ensembl |
|
|
COSM1261523 rs893084747 CA316282335 |
542 | N>K | oesophagus [Cosmic] | No |
ClinGen cosmic curated TOPMed |
|
rs773381529 CA9922431 |
542 | N>S | No |
ClinGen ExAC gnomAD |
|
|
CA9922433 rs373324803 |
543 | R>Q | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
COSM1028408 CA9922432 rs745817666 |
543 | R>W | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA409437598 rs1445305797 |
544 | I>F | No |
ClinGen gnomAD |
|
|
CA409437599 rs1385169175 |
544 | I>N | No |
ClinGen TOPMed |
|
|
rs768301740 CA409437608 |
545 | D>E | No |
ClinGen ExAC gnomAD |
|
|
rs202078062 CA9922435 |
545 | D>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA9922437 rs776375312 |
546 | G>A | No |
ClinGen ExAC gnomAD |
|
|
CA409437616 rs1283262664 |
547 | K>E | No |
ClinGen TOPMed gnomAD |
|
|
CA409437625 rs1600708711 |
548 | A>D | No |
ClinGen Ensembl |
|
| TCGA novel | 548 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 549 | S>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1029281359 CA316282372 |
550 | T>A | No |
ClinGen TOPMed |
|
|
rs141743884 CA9922440 |
550 | T>I | No |
ClinGen ESP ExAC gnomAD |
|
|
CA409437663 rs1275134005 |
554 | P>R | No |
ClinGen TOPMed |
|
|
CA409437669 rs1220210881 |
555 | I>T | No |
ClinGen gnomAD |
|
|
rs1220356303 CA409437675 |
556 | G>V | No |
ClinGen TOPMed |
|
|
CA9922443 rs371151851 |
557 | Y>* | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1317955321 CA409437682 |
557 | Y>C | No |
ClinGen gnomAD |
|
|
rs752993638 CA9922446 |
559 | P>L | No |
ClinGen ExAC gnomAD |
|
|
CA409437697 rs200640038 |
560 | K>E | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA316282418 rs907601736 |
560 | K>M | No |
ClinGen gnomAD |
|
|
CA9922447 rs200640038 |
560 | K>Q | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs961661732 CA316282424 |
561 | E>D | No |
ClinGen TOPMed |
|
| TCGA novel | 561 | E>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1441101684 CA409437704 |
561 | E>K | No |
ClinGen TOPMed |
|
|
CA409437713 rs1346573428 |
562 | D>G | No |
ClinGen TOPMed gnomAD |
|
|
CA9922448 rs778009128 |
562 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA409437714 rs1346573428 |
562 | D>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1221541161 CA409437718 |
563 | A>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1221541161 CA409437719 |
563 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA316282450 rs374391997 |
568 | G>S | No |
ClinGen ESP TOPMed gnomAD |
|
|
CA409437753 rs1329356295 |
568 | G>V | No |
ClinGen gnomAD |
|
|
CA409437759 CA9922449 rs749433706 |
570 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1600708775 CA409437765 |
571 | H>D | No |
ClinGen Ensembl |
|
|
rs1600708778 CA409437768 |
571 | H>R | No |
ClinGen Ensembl |
|
|
rs1478309756 CA409437773 |
572 | I>V | No |
ClinGen gnomAD |
|
|
rs1467864672 CA409437783 |
573 | N>S | No |
ClinGen TOPMed gnomAD |
|
|
CA409437791 rs1248361136 |
574 | M>T | No |
ClinGen TOPMed gnomAD |
|
|
rs199728493 CA9922451 |
574 | M>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1600708791 CA409437797 |
575 | M>K | No |
ClinGen Ensembl |
|
|
CA9922452 rs138431434 |
575 | M>V | No |
ClinGen ESP ExAC gnomAD |
|
|
CA409437813 rs1409004157 |
577 | L>F | No |
ClinGen TOPMed gnomAD |
|
|
CA409437811 rs1409004157 |
577 | L>I | No |
ClinGen TOPMed gnomAD |
|
|
rs34103538 CA409437825 |
579 | S>G | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs367951958 CA316282515 |
579 | S>N | No |
ClinGen ESP |
|
|
CA409437830 rs1600708822 |
579 | S>R | No |
ClinGen Ensembl |
|
|
CA316282525 rs373655980 |
580 | I>T | No |
ClinGen ESP TOPMed gnomAD |
|
|
rs371783318 CA9922455 |
580 | I>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9922456 rs769502669 |
582 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 583 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
VAR_042444 CA316282571 rs1042529 |
586 | E>D | No |
ClinGen UniProt Ensembl dbSNP |
|
|
CA316282553 rs201347603 |
586 | E>G | No |
ClinGen 1000Genomes |
|
|
CA409437875 rs1278381131 |
586 | E>K | No |
ClinGen gnomAD |
|
|
CA9922459 rs367756890 |
588 | E>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1350892794 CA409437888 |
588 | E>K | No |
ClinGen TOPMed |
|
|
rs1333954446 CA409437902 |
590 | E>Q | No |
ClinGen gnomAD |
|
|
CA316282617 rs893130686 |
591 | D>A | No |
ClinGen TOPMed gnomAD |
|
|
CA409437912 rs893130686 |
591 | D>G | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 591 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1054922986 CA316282626 |
592 | I>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA9922462 rs767941725 |
593 | E>D | No |
ClinGen ExAC gnomAD |
|
|
CA9922461 rs201175342 |
593 | E>K | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
| TCGA novel | 594 | K>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1473608434 CA409437946 |
596 | L>P | No |
ClinGen gnomAD |
|
|
CA409437949 rs1186142819 |
597 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs1042530 CA316282640 |
597 | E>V | No |
ClinGen Ensembl |
|
|
rs1462320434 CA409437964 |
599 | Q>K | No |
ClinGen TOPMed gnomAD |
|
|
CA9922464 rs753047154 |
601 | N>S | No |
ClinGen ExAC gnomAD |
|
|
CA9922466 rs375658003 |
603 | D>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1370698333 CA409438000 |
604 | L>F | No |
ClinGen gnomAD |
|
|
rs1411103055 CA409438005 |
605 | P>A | No |
ClinGen TOPMed gnomAD |
|
|
CA9922467 rs200272426 |
606 | C>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA409438010 rs200272426 |
606 | C>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1354379102 CA409438012 |
606 | C>Y | No |
ClinGen gnomAD |
|
|
CA9922468 rs757386984 |
608 | I>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs17847705 CA409438032 |
609 | E>* | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
| TCGA novel | 609 | E>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs17847705 CA9922471 |
609 | E>K | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA9922473 rs373831494 |
610 | R>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA409438050 rs1401473852 COSM1681792 |
611 | E>D | large_intestine [Cosmic] | No |
ClinGen cosmic curated gnomAD |
|
CA9922474 rs200805749 |
611 | E>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
| rs1489385207 | 612 | I>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA316282751 rs534579150 |
615 | L>S | No |
ClinGen 1000Genomes |
|
|
CA409438095 rs1257102778 |
616 | K>T | No |
ClinGen gnomAD |
|
|
CA409438126 rs1322202364 |
618 | R>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
CA9922477 CA9922478 rs770499580 |
621 | Q>H | No |
ClinGen ExAC gnomAD |
|
|
rs1475283790 CA409438194 |
622 | M>I | No |
ClinGen gnomAD |
|
|
CA409438189 rs1371766319 |
622 | M>T | No |
ClinGen gnomAD |
1 associated diseases with P35558
[MIM: 261680]: Phosphoenolpyruvate carboxykinase deficiency, cytosolic (PCKDC)
An autosomal recessive metabolic disorder characterized by impaired gluconeogenesis, hypoglycemia, hypotonia, hepatomegaly, hepatic dysfunction, failure to thrive, lactic acidosis, and elevated tricarboxylic acid intermediates, particularly fumarate, in urine. {ECO:0000269|PubMed:24863970, ECO:0000269|PubMed:26971250, ECO:0000269|PubMed:28216384}. Note=The disease is caused by variants affecting the gene represented in this entry.
Without disease ID
- An autosomal recessive metabolic disorder characterized by impaired gluconeogenesis, hypoglycemia, hypotonia, hepatomegaly, hepatic dysfunction, failure to thrive, lactic acidosis, and elevated tricarboxylic acid intermediates, particularly fumarate, in urine. {ECO:0000269|PubMed:24863970, ECO:0000269|PubMed:26971250, ECO:0000269|PubMed:28216384}. Note=The disease is caused by variants affecting the gene represented in this entry.
3 regional properties for P35558
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| conserved_site | Phosphoenolpyruvate carboxykinase, GTP-utilising, conserved site | 284 - 292 | IPR018091 |
| domain | Phosphoenolpyruvate carboxykinase, C-terminal P-loop domain | 260 - 618 | IPR035077 |
| domain | Phosphoenolpyruvate carboxykinase, GTP-utilising, N-terminal | 29 - 256 | IPR035078 |
Functions
| Description | ||
|---|---|---|
| EC Number | 4.1.1.32 | Carboxy-lyases |
| Subcellular Localization |
|
|
| PANTHER Family | ||
| PANTHER Subfamily | ||
| PANTHER Protein Class | ||
| PANTHER Pathway Category | No pathway information available | |
5 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
| cytosol | The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. |
| endoplasmic reticulum | The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). |
| extracellular exosome | A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm. |
| mitochondrion | A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. |
6 GO annotations of molecular function
| Name | Definition |
|---|---|
| carboxylic acid binding | Binding to a carboxylic acid, an organic acid containing one or more carboxyl (COOH) groups or anions (COO-). |
| GTP binding | Binding to GTP, guanosine triphosphate. |
| magnesium ion binding | Binding to a magnesium (Mg) ion. |
| manganese ion binding | Binding to a manganese ion (Mn). |
| phosphoenolpyruvate carboxykinase (GTP) activity | Catalysis of the reaction: GTP + oxaloacetate = GDP + phosphoenolpyruvate + CO2. |
| protein serine kinase activity (using GTP as donor) | Catalysis of the reactions: GTP + L-seryl- = GDP + H(+) + O-phospho-L-seryl- |
19 GO annotations of biological process
| Name | Definition |
|---|---|
| cellular response to dexamethasone stimulus | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a dexamethasone stimulus. |
| cellular response to glucose stimulus | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus. |
| cellular response to insulin stimulus | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms. |
| cellular response to potassium ion starvation | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of potassium ions. |
| gluconeogenesis | The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol. |
| glucose homeostasis | Any process involved in the maintenance of an internal steady state of glucose within an organism or cell. |
| glucose metabolic process | The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides. |
| glycerol biosynthetic process from pyruvate | The chemical reactions and pathways resulting in the formation of glycerol, 1,2,3-propanetriol, from other compounds, including pyruvate. |
| hepatocyte differentiation | The process in which a relatively unspecialized cell acquires the specialized features of a hepatocyte. A hepatocyte is specialized epithelial cell that is organized into interconnected plates called lobules, and is the main structural component of the liver. |
| oxaloacetate metabolic process | The chemical reactions and pathways involving oxaloacetate, the anion of oxobutanedioic acid, an important intermediate in metabolism, especially as a component of the TCA cycle. |
| peptidyl-serine phosphorylation | The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine. |
| positive regulation of memory T cell differentiation | Any process that activates or increases the frequency, rate or extent of memory T cell differentiation. |
| positive regulation of transcription from RNA polymerase II promoter in response to acidic pH | Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a pH stimulus with pH < 7. |
| propionate catabolic process | The chemical reactions and pathways resulting in the breakdown of propionate, the anion derived from propionic acid. |
| regulation of lipid biosynthetic process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of lipids. |
| response to bacterium | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium. |
| response to insulin | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms. |
| response to lipid | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid stimulus. |
| response to starvation | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nourishment. |
3 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| P05153 | PCK1 | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | Gallus gallus (Chicken) | PR |
| Q9Z2V4 | Pck1 | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | Mus musculus (Mouse) | PR |
| P07379 | Pck1 | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | Rattus norvegicus (Rat) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MPPQLQNGLN | LSAKVVQGSL | DSLPQAVREF | LENNAELCQP | DHIHICDGSE | EENGRLLGQM |
| 70 | 80 | 90 | 100 | 110 | 120 |
| EEEGILRRLK | KYDNCWLALT | DPRDVARIES | KTVIVTQEQR | DTVPIPKTGL | SQLGRWMSEE |
| 130 | 140 | 150 | 160 | 170 | 180 |
| DFEKAFNARF | PGCMKGRTMY | VIPFSMGPLG | SPLSKIGIEL | TDSPYVVASM | RIMTRMGTPV |
| 190 | 200 | 210 | 220 | 230 | 240 |
| LEAVGDGEFV | KCLHSVGCPL | PLQKPLVNNW | PCNPELTLIA | HLPDRREIIS | FGSGYGGNSL |
| 250 | 260 | 270 | 280 | 290 | 300 |
| LGKKCFALRM | ASRLAKEEGW | LAEHMLILGI | TNPEGEKKYL | AAAFPSACGK | TNLAMMNPSL |
| 310 | 320 | 330 | 340 | 350 | 360 |
| PGWKVECVGD | DIAWMKFDAQ | GHLRAINPEN | GFFGVAPGTS | VKTNPNAIKT | IQKNTIFTNV |
| 370 | 380 | 390 | 400 | 410 | 420 |
| AETSDGGVYW | EGIDEPLASG | VTITSWKNKE | WSSEDGEPCA | HPNSRFCTPA | SQCPIIDAAW |
| 430 | 440 | 450 | 460 | 470 | 480 |
| ESPEGVPIEG | IIFGGRRPAG | VPLVYEALSW | QHGVFVGAAM | RSEATAAAEH | KGKIIMHDPF |
| 490 | 500 | 510 | 520 | 530 | 540 |
| AMRPFFGYNF | GKYLAHWLSM | AQHPAAKLPK | IFHVNWFRKD | KEGKFLWPGF | GENSRVLEWM |
| 550 | 560 | 570 | 580 | 590 | 600 |
| FNRIDGKAST | KLTPIGYIPK | EDALNLKGLG | HINMMELFSI | SKEFWEKEVE | DIEKYLEDQV |
| 610 | 620 | ||||
| NADLPCEIER | EILALKQRIS | QM |