P35251
Gene name |
RFC1 (RFC140) |
Protein name |
Replication factor C subunit 1 |
Names |
Activator 1 140 kDa subunit, A1 140 kDa subunit, Activator 1 large subunit, Activator 1 subunit 1, DNA-binding protein PO-GA, Replication factor C 140 kDa subunit, RF-C 140 kDa subunit, RFC140, Replication factor C large subunit |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:5981 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
5 structures for P35251
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| 2EBU | NMR | - | A | 392-496 | PDB |
| 2K6G | NMR | - | A | 375-480 | PDB |
| 2K7F | NMR | - | A | 375-480 | PDB |
| 6VVO | EM | 340 A | A | 556-1148 | PDB |
| AF-P35251-F1 | Predicted | AlphaFoldDB |
813 variants for P35251
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
rs1739849007 RCV001331820 |
133 | N>S | Cerebellar ataxia with neuropathy and bilateral vestibular areflexia syndrome [ClinVar] | Yes |
ClinVar dbSNP |
|
rs190369900 CA2893544 |
4 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA gnomAD |
|
CA2893545 rs768465738 |
4 | R>W | No |
ClinGen ExAC gnomAD |
|
|
CA356635904 rs1390785482 |
8 | G>E | No |
ClinGen gnomAD |
|
|
rs1205443032 CA356635891 |
10 | I>V | No |
ClinGen TOPMed |
|
|
rs1190401351 CA356635843 |
12 | S>G | No |
ClinGen TOPMed gnomAD |
|
|
CA2893542 rs757307308 |
13 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1182085253 CA356635745 |
16 | L>V | No |
ClinGen TOPMed |
|
|
CA2893540 rs61759896 |
18 | S>N | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA2893539 rs753085990 |
20 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2893538 rs753085990 |
20 | T>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs753463107 CA2893535 |
24 | N>S | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 25 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1277443149 CA356635509 |
26 | K>R | No |
ClinGen gnomAD |
|
|
CA356635487 rs1232681406 |
27 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
CA356635481 rs1232681406 |
27 | T>R | No |
ClinGen TOPMed gnomAD |
|
|
CA2893534 rs765960748 COSM254917 |
28 | K>M | urinary_tract [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA356635253 rs945708128 |
36 | A>E | No |
ClinGen TOPMed |
|
|
CA95685779 rs945708128 |
36 | A>G | No |
ClinGen TOPMed |
|
|
CA356635260 rs1307655865 |
36 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
CA2893531 rs772638183 |
37 | K>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA356635170 rs1372463082 |
38 | K>N | No |
ClinGen gnomAD |
|
|
CA2893530 rs771976617 |
39 | G>A | No |
ClinGen ExAC gnomAD |
|
|
rs1424206286 CA356635125 |
42 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
rs761691796 CA356635095 |
43 | I>M | No |
ClinGen ExAC gnomAD |
|
|
CA356635084 rs1225289731 |
44 | K>R | No |
ClinGen TOPMed |
|
|
rs774220730 CA2893504 |
45 | V>I | No |
ClinGen ExAC gnomAD |
|
|
CA95724780 rs951097556 |
47 | S>G | No |
ClinGen TOPMed gnomAD |
|
|
CA95724779 rs201314036 |
48 | S>F | No |
ClinGen 1000Genomes TOPMed |
|
|
rs1025507219 COSM1485947 CA95724747 |
49 | R>C | Variant assessed as Somatic; 0.0 impact. breast [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
|
CA2893502 rs762801694 |
49 | R>H | No |
ClinGen ExAC gnomAD |
|
|
CA2893503 rs762801694 |
49 | R>L | No |
ClinGen ExAC gnomAD |
|
|
rs1463843267 CA356661452 |
52 | D>N | No |
ClinGen gnomAD |
|
|
rs1267849876 CA356661429 |
54 | F>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1209600239 CA356661415 |
55 | K>N | No |
ClinGen TOPMed gnomAD |
|
|
CA2893501 rs775184201 |
56 | Q>* | No |
ClinGen ExAC gnomAD |
|
|
CA95724746 rs200203404 |
57 | K>N | No |
ClinGen TOPMed |
|
|
rs1379947730 CA356661388 |
59 | P>L | No |
ClinGen gnomAD |
|
|
rs747148742 CA2893499 |
59 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs773598218 CA2893498 |
60 | S>N | No |
ClinGen ExAC gnomAD |
|
|
rs748251247 CA356661380 |
61 | K>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs748251247 CA2893496 |
61 | K>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs779548462 CA2893495 |
61 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs560959580 CA2893494 |
64 | R>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1319253803 CA356661337 |
66 | I>M | No |
ClinGen TOPMed |
|
|
CA2893493 rs749643454 |
67 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
rs1560617691 CA356661335 |
67 | Y>H | No |
ClinGen Ensembl |
|
|
CA356661328 rs1404298637 |
68 | D>H | No |
ClinGen gnomAD |
|
|
rs1404298637 CA356661327 |
68 | D>Y | No |
ClinGen gnomAD |
|
|
CA356661316 rs1328381611 |
69 | S>L | No |
ClinGen TOPMed |
|
|
rs1483758535 CA356660635 |
70 | D>E | No |
ClinGen TOPMed |
|
|
CA356660622 rs1169747277 |
71 | S>L | No |
ClinGen gnomAD |
|
|
CA2893471 rs148989502 |
73 | S>P | No |
ClinGen ESP ExAC gnomAD |
|
|
CA95722501 rs148989502 |
73 | S>T | No |
ClinGen ESP ExAC gnomAD |
|
|
rs1560616018 CA356660583 |
74 | E>G | No |
ClinGen Ensembl |
|
|
rs1265647504 CA356660555 |
76 | T>A | No |
ClinGen gnomAD |
|
|
CA356660550 rs1190859841 |
76 | T>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs1248660560 CA356660520 |
78 | Q>P | No |
ClinGen gnomAD |
|
|
rs1248660560 CA356660518 |
78 | Q>R | No |
ClinGen gnomAD |
|
|
rs749719474 CA2893469 |
79 | V>A | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 81 | N>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 82 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA356660445 rs1273897241 |
83 | K>Q | No |
ClinGen gnomAD |
|
|
CA356660419 rs1228995587 |
84 | K>N | No |
ClinGen gnomAD |
|
|
rs1403274318 CA356660408 |
85 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
CA356660407 rs1403274318 |
85 | P>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs780617627 CA2893468 |
85 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs1406608268 CA356660391 |
86 | P>L | No |
ClinGen TOPMed |
|
|
rs1298830396 CA356660377 |
87 | E>G | No |
ClinGen gnomAD |
|
|
rs75288703 CA95722446 |
87 | E>K | No |
ClinGen Ensembl |
|
|
rs374246085 CA95722418 |
88 | K>N | No |
ClinGen Ensembl |
|
|
CA2893466 rs746294007 |
89 | L>R | No |
ClinGen ExAC gnomAD |
|
|
rs1560615924 CA356660327 |
90 | P>L | No |
ClinGen Ensembl |
|
|
rs1304573693 CA356660307 |
92 | S>Y | No |
ClinGen gnomAD |
|
|
rs1464312678 CA356660291 |
93 | S>F | No |
ClinGen gnomAD |
|
|
CA2893464 rs375316955 |
94 | K>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA2893463 rs751042466 |
95 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs751042466 CA95722384 |
95 | P>R | No |
ClinGen ExAC gnomAD |
|
|
rs1177398955 CA356660268 |
95 | P>S | No |
ClinGen TOPMed |
|
|
rs777096916 CA2893462 |
97 | K>E | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 97 | K>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs757953728 CA2893461 |
100 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA95722362 rs369009654 |
100 | R>W | No |
ClinGen ESP TOPMed gnomAD |
|
|
CA2893460 rs752508090 |
101 | Q>E | No |
ClinGen ExAC gnomAD |
|
|
COSM1581598 rs145820966 CA2893459 |
101 | Q>R | haematopoietic_and_lymphoid_tissue [Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD |
|
rs143871368 CA2893457 |
102 | D>H | No |
ClinGen 1000Genomes ESP ExAC gnomAD |
|
|
CA2893458 rs143871368 |
102 | D>N | No |
ClinGen 1000Genomes ESP ExAC gnomAD |
|
|
CA95722348 rs143871368 |
102 | D>Y | No |
ClinGen 1000Genomes ESP ExAC gnomAD |
|
| TCGA novel | 105 | T>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1252583536 CA356660124 |
105 | T>I | No |
ClinGen gnomAD |
|
|
CA2893455 rs762078054 |
106 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
CA2893453 rs768553238 |
110 | T>R | No |
ClinGen ExAC gnomAD |
|
|
rs569007187 CA2893432 |
111 | D>E | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA2893433 rs146652791 |
111 | D>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA2893431 rs777151667 |
116 | F>L | No |
ClinGen ExAC gnomAD |
|
|
CA2893429 rs747412068 |
117 | M>T | No |
ClinGen ExAC gnomAD |
|
|
CA2893430 rs771216082 |
117 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs372006154 CA2893427 |
121 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA2893424 rs778438832 |
124 | K>E | No |
ClinGen ExAC gnomAD |
|
|
CA2893422 rs749171683 |
127 | E>D | No |
ClinGen ExAC gnomAD |
|
|
CA2893421 rs780156280 |
128 | N>S | No |
ClinGen ExAC gnomAD |
|
|
rs1209981346 CA356656925 |
130 | R>G | No |
ClinGen gnomAD |
|
|
CA2893420 COSM1055238 rs755963050 |
130 | R>I | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
CA95713276 rs1028691663 |
131 | S>A | No |
ClinGen TOPMed |
|
|
CA2893419 rs750301952 |
131 | S>C | No |
ClinGen ExAC gnomAD |
|
|
rs764195715 CA2893418 |
132 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs895251004 CA95713254 |
133 | N>D | No |
ClinGen TOPMed |
|
|
CA95713252 rs370664179 |
133 | N>K | No |
ClinGen ESP TOPMed gnomAD |
|
|
rs752880075 CA2893416 |
135 | H>R | No |
ClinGen ExAC gnomAD |
|
|
rs765256510 CA95713244 |
137 | G>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs765256510 CA2893415 |
137 | G>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA356656759 rs1324933063 |
141 | M>V | No |
ClinGen TOPMed |
|
|
rs766928118 CA2893412 |
143 | K>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs760942281 CA2893411 |
146 | E>Q | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 146 | E>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2893409 rs771601041 |
148 | T>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs376735975 CA95713213 |
152 | N>S | No |
ClinGen gnomAD |
|
|
rs1376751995 CA356656571 |
153 | K>R | No |
ClinGen gnomAD |
|
|
CA356656566 rs1437548709 |
154 | P>A | No |
ClinGen gnomAD |
|
|
rs1442148992 CA356656525 |
155 | L>F | No |
ClinGen TOPMed |
|
|
rs141727621 CA2893407 |
157 | P>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA356656490 rs1560608231 |
157 | P>L | No |
ClinGen Ensembl |
|
|
rs1205077506 CA356656486 |
158 | I>V | No |
ClinGen gnomAD |
|
|
rs1275704364 CA356656422 |
160 | L>F | No |
ClinGen gnomAD |
|
|
CA2893405 rs748868314 |
160 | L>R | No |
ClinGen ExAC gnomAD |
|
|
CA356656395 rs1344726050 |
162 | P>A | No |
ClinGen TOPMed gnomAD |
|
|
CA356656394 rs1344726050 |
162 | P>S | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 165 | V>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs745632771 CA2893402 |
165 | V>L | No |
ClinGen ExAC gnomAD |
|
|
CA2893401 rs780987463 |
166 | L>F | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 166 | L>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 168 | Y>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs757029913 CA2893400 |
171 | T>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1330768994 CA356656140 |
172 | G>R | No |
ClinGen gnomAD |
|
|
rs1405087418 CA356656099 |
173 | S>G | No |
ClinGen TOPMed |
|
|
rs886459529 CA95713166 |
175 | Q>R | No |
ClinGen TOPMed |
|
|
rs752894711 CA2893399 |
176 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs765456455 CA2893398 COSM3428492 |
176 | R>K | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
COSM460629 CA356655978 rs1333670896 |
177 | S>C | cervix Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA TOPMed |
|
rs1560608140 CA356655946 |
178 | N>S | No |
ClinGen Ensembl |
|
|
CA356655904 rs1176744586 |
179 | K>N | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 182 | V>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA356655804 rs1178792632 |
182 | V>M | No |
ClinGen gnomAD |
|
|
CA356655752 rs1481174828 |
184 | S>N | No |
ClinGen gnomAD |
|
|
CA356655766 rs1346833260 |
184 | S>R | No |
ClinGen TOPMed |
|
| TCGA novel | 190 | S>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs779100462 CA2893381 |
191 | Q>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1409483894 CA356655425 |
192 | N>D | No |
ClinGen gnomAD |
|
|
rs768073660 CA95712544 |
196 | S>P | No |
ClinGen gnomAD |
|
|
CA95712531 rs758568648 |
200 | D>A | No |
ClinGen Ensembl |
|
|
CA356655257 rs1445540699 |
200 | D>H | No |
ClinGen TOPMed |
|
|
CA356655259 rs1445540699 |
200 | D>N | No |
ClinGen TOPMed |
|
|
rs753892527 CA2893379 |
201 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA356655203 rs780132979 |
202 | A>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA356655201 rs780132979 |
202 | A>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs780132979 CA2893378 |
202 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2893376 COSM1055237 rs376166947 |
204 | A>T | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs55704262 CA2893374 |
208 | Q>H | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA356655089 rs1318842710 |
208 | Q>L | No |
ClinGen gnomAD |
|
|
CA2893373 rs532718208 |
213 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA356654534 rs1560606199 |
216 | E>V | No |
ClinGen Ensembl |
|
|
CA2893359 rs369129047 |
217 | R>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA95710437 rs200429404 |
219 | L>V | No |
ClinGen Ensembl |
|
|
rs1214931015 CA356654461 |
220 | H>L | No |
ClinGen TOPMed gnomAD |
|
|
CA356654452 rs1214931015 |
220 | H>R | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA2893355 rs781704210 |
222 | D>E | No |
ClinGen ExAC gnomAD |
|
|
rs750536992 CA2893356 |
222 | D>V | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 222 | D>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs750536992 CA356654411 |
222 | D>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs757891211 CA2893354 |
224 | E>G | No |
ClinGen ExAC gnomAD |
|
|
CA95710429 rs113072594 |
225 | F>L | No |
ClinGen Ensembl |
|
| TCGA novel | 225 | F>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2893351 rs758834846 |
228 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs764517878 CA2893352 |
228 | T>S | No |
ClinGen ExAC gnomAD |
|
|
rs1215006062 CA356654269 |
229 | L>S | No |
ClinGen gnomAD |
|
|
CA356654275 rs1171628276 |
229 | L>V | No |
ClinGen gnomAD |
|
|
rs1560606115 CA356654242 |
230 | A>V | No |
ClinGen Ensembl |
|
|
CA356654238 rs1430656897 |
231 | M>V | No |
ClinGen gnomAD |
|
|
CA356654178 rs1423371394 |
233 | D>E | No |
ClinGen gnomAD |
|
|
rs752335779 CA2893350 |
234 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 240 | K>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs753551050 CA2893328 |
241 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs760191657 COSM1429621 CA2893327 |
242 | R>* | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
rs760191657 CA2893326 |
242 | R>G | No |
ClinGen ExAC gnomAD |
|
|
rs773119176 CA2893325 |
242 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs773119176 CA356653085 |
242 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA356653007 rs201358782 |
247 | A>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA2893323 rs201358782 |
247 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA2893321 rs28903095 |
248 | G>R | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA95709430 rs1035194287 |
249 | E>K | No |
ClinGen TOPMed |
|
|
rs746033187 CA2893320 |
250 | T>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1008965140 CA95709414 |
251 | F>C | No |
ClinGen Ensembl |
|
|
CA356652929 rs1174790021 |
253 | S>P | No |
ClinGen TOPMed |
|
|
CA356652907 rs1157194176 |
254 | V>A | No |
ClinGen gnomAD |
|
|
rs778423177 CA2893316 |
254 | V>L | No |
ClinGen ExAC gnomAD |
|
|
CA356652892 rs1456803206 |
255 | Q>R | No |
ClinGen gnomAD |
|
|
CA2893315 rs759016023 |
256 | A>G | No |
ClinGen ExAC gnomAD |
|
|
rs748525530 CA2893314 |
257 | N>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs779098990 CA2893313 |
258 | L>F | No |
ClinGen ExAC gnomAD |
|
|
CA2893312 rs755402925 |
259 | S>C | No |
ClinGen ExAC gnomAD |
|
|
rs755402925 CA356652819 |
259 | S>G | No |
ClinGen ExAC gnomAD |
|
|
CA356652808 rs1190866199 |
259 | S>I | No |
ClinGen TOPMed gnomAD |
|
|
CA356652741 rs1182825971 |
262 | E>D | No |
ClinGen gnomAD |
|
|
rs377367100 CA95709403 |
264 | H>R | No |
ClinGen Ensembl |
|
|
rs1578135991 CA356652668 |
267 | P>H | No |
ClinGen Ensembl |
|
| TCGA novel | 267 | P>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2893311 rs753366121 |
267 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA95709396 rs753366121 |
267 | P>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2893310 rs200063891 |
268 | H>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA95709394 rs147243992 |
268 | H>Y | No |
ClinGen ESP |
|
|
rs756791779 CA2893286 |
272 | T>I | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 274 | Q>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 274 | Q>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 275 | V>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1364986119 CA356652513 |
275 | V>I | No |
ClinGen gnomAD |
|
|
rs201311873 CA95709036 |
277 | D>H | No |
ClinGen 1000Genomes |
|
|
rs752583076 CA2893282 |
278 | E>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2893283 rs762655321 |
278 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs149569383 CA2893281 |
279 | R>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA2893280 rs760932819 |
280 | K>N | No |
ClinGen ExAC gnomAD |
|
|
rs1194812270 CA356652327 |
284 | P>S | No |
ClinGen gnomAD |
|
| TCGA novel | 285 | R>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2893279 rs572693377 |
286 | K>R | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA95708999 rs940851959 |
289 | K>R | No |
ClinGen TOPMed |
|
|
CA2893277 rs761966474 |
291 | E>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1491001504 CA356652162 |
293 | S>P | No |
ClinGen gnomAD |
|
|
CA2893276 rs372173606 |
294 | K>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA95708991 rs533588479 |
296 | S>P | No |
ClinGen TOPMed |
|
|
rs1340472680 CA356651975 |
301 | K>R | No |
ClinGen gnomAD |
|
|
rs749592628 CA2893274 |
304 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs1231286448 CA356651879 |
304 | A>V | No |
ClinGen gnomAD |
|
|
rs1457407252 CA356651861 |
305 | D>E | No |
ClinGen TOPMed |
|
|
CA95708966 rs374128143 |
305 | D>G | No |
ClinGen Ensembl |
|
|
rs1210493037 CA356651765 |
307 | I>T | No |
ClinGen TOPMed |
|
|
rs1470051371 CA356651709 |
310 | V>D | No |
ClinGen gnomAD |
|
|
CA356651657 rs1406840014 |
311 | S>Y | No |
ClinGen gnomAD |
|
|
rs1409175533 CA356651588 |
313 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
rs1326741422 CA356651610 |
313 | P>S | No |
ClinGen gnomAD |
|
|
rs780346100 CA2893272 |
314 | K>R | No |
ClinGen ExAC gnomAD |
|
|
rs34586398 CA95708958 |
317 | S>F | No |
ClinGen Ensembl |
|
|
CA2893271 rs559190915 |
317 | S>T | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA356651473 rs1431306296 |
318 | K>E | No |
ClinGen TOPMed |
|
|
CA356651414 rs1197925875 |
320 | A>P | No |
ClinGen TOPMed |
|
|
rs1428155697 CA356651405 |
320 | A>V | No |
ClinGen gnomAD |
|
|
rs780832386 CA2893269 |
322 | M>L | No |
ClinGen ExAC gnomAD |
|
|
CA2893268 rs756712820 |
322 | M>T | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 323 | K>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA356651275 rs1181661083 |
324 | R>K | No |
ClinGen gnomAD |
|
|
rs746600122 CA2893267 |
325 | K>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2893266 rs777544130 |
326 | E>G | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 327 | E>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs908017417 CA95708942 |
327 | E>G | No |
ClinGen TOPMed |
|
|
rs1057394361 CA356651146 |
328 | S>I | No |
ClinGen TOPMed gnomAD |
|
|
CA356651151 rs1168146563 |
328 | S>R | No |
ClinGen TOPMed |
|
|
CA95708936 rs1057394361 |
328 | S>T | No |
ClinGen TOPMed gnomAD |
|
|
CA95708927 rs201558285 |
329 | S>F | No |
ClinGen 1000Genomes |
|
|
rs1167967876 CA356651125 |
329 | S>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs752705656 CA2893264 |
333 | I>T | No |
ClinGen ExAC gnomAD |
|
|
rs1294705033 CA356650814 |
335 | P>L | No |
ClinGen TOPMed |
|
|
CA95708901 rs938879469 |
337 | A>P | No |
ClinGen TOPMed gnomAD |
|
|
rs1441302773 CA356650744 |
338 | S>* | No |
ClinGen gnomAD |
|
|
COSM187434 CA356650736 rs1441302773 |
338 | S>L | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
CA95708894 rs569282965 |
339 | K>E | No |
ClinGen 1000Genomes |
|
|
CA356650661 rs1336137802 |
340 | R>K | No |
ClinGen gnomAD |
|
|
CA356650552 rs1578135084 |
343 | N>Y | No |
ClinGen Ensembl |
|
|
rs1450181816 CA356650496 |
344 | A>T | No |
ClinGen gnomAD |
|
|
CA2893262 rs137867721 |
346 | K>I | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs137867721 CA2893261 |
346 | K>R | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA95708867 rs980499125 |
348 | K>R | No |
ClinGen TOPMed |
|
|
rs1341561499 CA356650246 |
350 | E>G | No |
ClinGen TOPMed |
|
|
CA2893258 rs774537579 |
351 | T>A | No |
ClinGen ExAC gnomAD |
|
|
RCV000912007 rs567126430 CA2893257 |
351 | T>I | No |
ClinGen ClinVar 1000Genomes ExAC dbSNP gnomAD |
|
|
rs1182173157 CA356650160 |
354 | P>S | No |
ClinGen gnomAD |
|
|
CA2893254 rs775978452 |
357 | T>A | No |
ClinGen ExAC gnomAD |
|
|
rs55734630 CA2893253 |
357 | T>S | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs746285755 CA2893252 |
358 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs776147227 CA2893251 |
359 | S>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2893249 rs140509314 |
361 | P>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1281185688 CA356649943 |
363 | K>R | No |
ClinGen gnomAD |
|
|
rs746480822 CA2893248 |
365 | E>K | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 365 | E>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs749259193 CA2893210 |
366 | S>C | No |
ClinGen ExAC gnomAD |
|
|
rs749259193 CA356647919 |
366 | S>F | No |
ClinGen ExAC gnomAD |
|
|
rs201630129 CA95706264 |
367 | V>L | No |
ClinGen 1000Genomes |
|
|
rs1301837081 CA356647890 |
368 | S>N | No |
ClinGen TOPMed gnomAD |
|
|
rs1424516993 CA356647864 |
369 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
CA356647873 rs1354550306 |
369 | P>T | No |
ClinGen gnomAD |
|
|
CA2893209 rs779858013 |
372 | S>F | No |
ClinGen ExAC gnomAD |
|
|
CA2893207 rs138918161 |
376 | R>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA2893206 rs374549255 |
376 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA2893204 rs752817616 |
377 | T>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs752817616 CA2893205 |
377 | T>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs759294546 CA2893203 |
378 | N>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2893202 rs759989483 |
379 | Y>F | No |
ClinGen ExAC gnomAD |
|
|
rs754336277 CA2893201 |
382 | Y>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
COSM1429620 CA95706186 rs896111059 |
383 | R>Q | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
CA356647524 rs1035947105 |
388 | R>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs760962792 CA2893199 |
388 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
COSM4159061 CA2893198 rs552225009 |
389 | E>D | thyroid [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
| TCGA novel | 390 | G>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs200654181 CA2893197 |
392 | K>E | No |
ClinGen ESP ExAC gnomAD |
|
|
CA2893196 rs761384771 |
394 | L>P | No |
ClinGen ExAC gnomAD |
|
|
CA2893195 rs773949787 |
396 | S>F | No |
ClinGen ExAC gnomAD |
|
|
rs768311053 CA2893194 |
399 | I>M | No |
ClinGen ExAC gnomAD |
|
|
rs1003176717 CA95706150 |
401 | K>R | No |
ClinGen gnomAD |
|
|
rs762425047 CA2893176 |
409 | G>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2893174 rs769655528 |
410 | L>V | No |
ClinGen ExAC gnomAD |
|
|
CA2893172 rs374739604 |
411 | I>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA2893173 rs374739604 |
411 | I>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA356645990 rs1417303223 |
412 | F>C | No |
ClinGen gnomAD |
|
|
rs370587908 CA2893170 |
416 | G>D | No |
ClinGen ESP ExAC |
|
|
CA2893168 rs755074181 |
417 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs756529258 CA2893165 |
419 | E>A | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 419 | E>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2893164 rs201881505 |
421 | I>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA2893162 COSM1163616 rs757709074 |
423 | R>* | pancreas [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
rs1398201957 CA356645922 |
424 | D>N | No |
ClinGen TOPMed |
|
|
rs1560600174 CA356645914 |
425 | E>K | No |
ClinGen Ensembl |
|
|
CA356645902 rs145113928 |
426 | A>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1306637456 CA356645906 |
426 | A>T | No |
ClinGen gnomAD |
|
|
CA2893160 rs145113928 |
426 | A>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1287485715 CA356645897 |
427 | K>R | No |
ClinGen TOPMed |
|
|
CA95698891 rs1031235840 |
428 | S>C | No |
ClinGen Ensembl |
|
|
rs1453577637 CA356645887 |
429 | L>V | No |
ClinGen gnomAD |
|
|
rs774908169 CA2893158 |
432 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs368877527 COSM1055231 CA2893157 |
432 | R>H | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA95698883 rs368877527 |
432 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs776556661 CA2893155 |
433 | Y>H | No |
ClinGen ExAC gnomAD |
|
|
CA356645856 rs1441351794 |
434 | G>R | No |
ClinGen gnomAD |
|
|
CA2893152 rs774551557 COSM1055230 |
437 | V>L | endometrium [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
rs1412158758 CA356645828 |
438 | T>I | No |
ClinGen TOPMed |
|
|
rs1461537999 CA356645821 |
440 | N>H | No |
ClinGen gnomAD |
|
|
rs768802365 CA2893151 |
442 | S>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs749546912 CA2893150 |
443 | K>N | No |
ClinGen ExAC gnomAD |
|
|
rs1202897147 CA356645796 |
443 | K>T | No |
ClinGen gnomAD |
|
|
rs758157010 CA95698838 |
446 | N>K | No |
ClinGen Ensembl |
|
|
rs765151856 CA95698837 |
447 | Y>C | No |
ClinGen Ensembl |
|
|
CA2893147 rs141418649 |
450 | M>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs369740243 COSM125824 CA2893146 |
452 | R>H | upper_aerodigestive_tract [Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD |
|
CA356645728 rs1297682689 |
453 | D>E | No |
ClinGen TOPMed |
|
|
rs1314858321 CA356645729 |
453 | D>V | No |
ClinGen gnomAD |
|
|
CA2893145 rs757688983 |
454 | S>N | No |
ClinGen ExAC gnomAD |
|
|
rs1342525398 CA356645710 |
456 | Q>R | No |
ClinGen gnomAD |
|
|
CA356645705 rs1356104867 |
457 | S>T | No |
ClinGen TOPMed |
|
|
CA356645688 rs1381747027 |
459 | S>N | No |
ClinGen gnomAD |
|
|
rs565756189 CA95698781 |
460 | D>G | No |
ClinGen Ensembl |
|
|
rs1374223058 CA356645652 |
462 | A>D | No |
ClinGen TOPMed |
|
|
rs146649219 CA2893128 |
463 | A>T | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA356645629 rs1461222088 |
466 | G>E | No |
ClinGen gnomAD |
|
|
CA2893127 rs371180655 |
469 | I>S | No |
ClinGen ESP ExAC gnomAD |
|
| TCGA novel | 470 | I>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2893126 rs771612144 |
471 | D>A | No |
ClinGen ExAC gnomAD |
|
|
CA356645586 rs1346505319 |
471 | D>E | No |
ClinGen TOPMed |
|
|
CA356645531 rs1216982136 |
475 | L>M | No |
ClinGen Ensembl |
|
|
CA2893125 rs747537833 |
479 | I>T | No |
ClinGen ExAC gnomAD |
|
|
CA2893123 rs758796849 |
480 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs367742770 CA2893124 |
480 | R>W | Variant assessed as Somatic; 4.623e-05 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA2893121 rs778686345 |
482 | M>L | No |
ClinGen ExAC gnomAD |
|
|
rs866531767 CA95697717 |
483 | P>S | No |
ClinGen Ensembl |
|
|
rs541798977 CA95697712 |
484 | G>D | No |
ClinGen gnomAD |
|
|
CA2893120 rs754480413 |
485 | K>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1199696482 CA356645356 |
485 | K>R | No |
ClinGen TOPMed |
|
|
CA2893119 rs753388385 |
487 | S>A | No |
ClinGen ExAC gnomAD |
|
|
rs1578125089 CA356645256 |
490 | E>K | No |
ClinGen Ensembl |
|
| TCGA novel | 491 | I>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA356645172 rs1437034275 |
495 | T>A | No |
ClinGen TOPMed gnomAD |
|
|
CA2893116 rs750377380 |
496 | E>G | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 498 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1447332666 CA356644528 |
502 | K>R | No |
ClinGen TOPMed |
|
|
CA2893097 rs750314523 |
503 | L>Q | No |
ClinGen ExAC gnomAD |
|
|
rs756968126 CA2893095 |
506 | T>I | No |
ClinGen ExAC gnomAD |
|
|
rs767556822 CA2893096 |
506 | T>S | No |
ClinGen ExAC gnomAD |
|
|
CA356644501 rs1212392375 |
507 | P>S | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 508 | Q>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2893094 rs369507694 |
508 | Q>P | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs764000823 CA2893093 |
509 | K>R | No |
ClinGen ExAC gnomAD |
|
|
rs1448444299 CA356644482 |
510 | N>H | No |
ClinGen TOPMed |
|
|
CA2893091 rs777001359 |
510 | N>K | No |
ClinGen ExAC |
|
|
rs759788745 CA2893092 |
510 | N>S | No |
ClinGen ExAC gnomAD |
|
|
CA356644476 rs1183676074 |
511 | V>I | No |
ClinGen TOPMed |
|
|
CA2893090 rs766510970 |
514 | K>Q | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 515 | R>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs760899943 CA2893089 |
516 | K>R | No |
ClinGen ExAC gnomAD |
|
|
CA2893088 rs773588677 |
518 | S>T | No |
ClinGen ExAC gnomAD |
|
|
rs748440897 CA356644409 |
521 | K>E | No |
ClinGen ExAC gnomAD |
|
|
rs748440897 CA2893086 |
521 | K>Q | No |
ClinGen ExAC gnomAD |
|
|
CA95695770 rs1037054416 |
522 | K>E | No |
ClinGen TOPMed gnomAD |
|
|
rs774729803 CA2893085 |
524 | S>P | No |
ClinGen ExAC gnomAD |
|
|
rs1420896413 CA356644367 |
527 | K>E | No |
ClinGen gnomAD |
|
|
rs769012008 CA2893084 |
527 | K>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2893081 rs755615781 |
531 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs918114541 CA95695739 |
532 | T>I | No |
ClinGen TOPMed |
|
|
CA2893080 rs745419387 |
534 | K>E | No |
ClinGen ExAC gnomAD |
|
|
rs780964610 CA2893079 |
534 | K>R | No |
ClinGen ExAC |
|
|
rs757166322 CA2893078 |
535 | R>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA356644303 rs1298018014 |
536 | D>E | No |
ClinGen gnomAD |
|
|
CA356644306 rs1241536139 |
536 | D>G | No |
ClinGen TOPMed gnomAD |
|
|
CA356644305 rs1241536139 |
536 | D>V | No |
ClinGen TOPMed gnomAD |
|
|
CA356644308 rs1474469059 |
536 | D>Y | No |
ClinGen gnomAD |
|
| TCGA novel | 538 | L>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1194466482 CA356644290 |
538 | L>W | No |
ClinGen gnomAD |
|
|
rs751480509 CA2893077 |
539 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2893076 rs371255500 |
539 | A>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA95695710 rs959688159 |
540 | K>T | No |
ClinGen TOPMed |
|
|
rs1229613405 CA356644264 |
542 | I>M | No |
ClinGen gnomAD |
|
| TCGA novel | 543 | K>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1206688096 CA356644251 |
544 | K>R | No |
ClinGen TOPMed |
|
|
CA2893072 rs183190812 |
546 | T>A | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs773390851 CA2893071 |
546 | T>I | No |
ClinGen ExAC gnomAD |
|
|
rs979799484 CA95695700 |
547 | D>E | No |
ClinGen TOPMed gnomAD |
|
|
CA356644231 rs1432677571 |
547 | D>G | No |
ClinGen gnomAD |
|
| TCGA novel | 547 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA356644221 rs1301779593 |
549 | F>L | No |
ClinGen TOPMed gnomAD |
|
|
rs1404753197 CA356644194 |
552 | S>I | No |
ClinGen gnomAD |
|
|
CA2893070 rs767518528 |
558 | Q>H | No |
ClinGen ExAC gnomAD |
|
|
rs774851700 CA2893068 |
564 | S>N | No |
ClinGen ExAC gnomAD |
|
|
CA2893067 rs768993651 |
565 | G>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs749720141 CA2893066 |
565 | G>V | No |
ClinGen ExAC gnomAD |
|
|
rs1478833233 CA356644100 |
566 | D>N | No |
ClinGen gnomAD |
|
|
CA95695628 rs17854711 |
567 | S>N | No |
ClinGen Ensembl |
|
|
rs149897970 CA2893064 |
568 | K>R | No |
ClinGen ESP ExAC gnomAD |
|
|
CA2893063 rs747426890 |
569 | A>T | No |
ClinGen ExAC |
|
|
CA2893062 rs375278905 |
570 | R>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1201656145 CA356644038 |
575 | D>N | No |
ClinGen gnomAD |
|
|
rs1223487211 CA356644010 |
578 | E>G | No |
ClinGen gnomAD |
|
| TCGA novel | 580 | K>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 581 | V>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1578122105 CA356643983 |
582 | E>K | No |
ClinGen Ensembl |
|
|
rs942718865 CA95695582 |
584 | L>F | No |
ClinGen TOPMed |
|
|
CA2893060 rs370147025 |
584 | L>W | No |
ClinGen ESP ExAC gnomAD |
|
|
rs139096199 COSM270027 CA2893059 |
593 | T>A | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
rs748333308 CA95695568 |
594 | S>L | No |
ClinGen gnomAD |
|
|
CA356643893 rs1368902896 |
595 | L>F | No |
ClinGen gnomAD |
|
|
CA356643869 rs377460974 |
598 | I>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA2893057 RCV000894321 VAR_014860 rs2066791 |
598 | I>V | No |
ClinGen ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs1332240399 CA356643864 |
599 | I>T | No |
ClinGen gnomAD |
|
|
rs562481131 CA95695548 |
599 | I>V | No |
ClinGen gnomAD |
|
|
CA2893055 rs780401677 |
601 | Q>R | No |
ClinGen ExAC gnomAD |
|
|
CA356643840 rs1427211421 |
603 | G>R | No |
ClinGen gnomAD |
|
|
CA356643829 rs1432587686 |
604 | D>E | No |
ClinGen TOPMed gnomAD |
|
|
CA95695532 rs989070824 |
604 | D>N | No |
ClinGen gnomAD |
|
|
CA356643800 rs1394387956 |
608 | A>G | No |
ClinGen TOPMed |
|
| TCGA novel | 609 | N>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1192754517 CA356643793 |
609 | N>T | No |
ClinGen gnomAD |
|
|
rs767574991 COSM3825819 CA2893052 |
613 | R>C | Variant assessed as Somatic; 0.0 impact. breast [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
rs1057747 CA356643769 |
613 | R>H | No |
ClinGen TOPMed gnomAD |
|
|
rs1057747 CA95695493 VAR_016986 |
613 | R>L | No |
ClinGen UniProt TOPMed dbSNP gnomAD |
|
|
rs761854574 CA2893051 COSM2846610 |
616 | R>Q | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
rs140584118 CA356643744 |
617 | N>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs140584118 CA2893050 |
617 | N>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1313341834 CA356643746 |
617 | N>Y | No |
ClinGen gnomAD |
|
|
CA356643729 rs1222450872 |
619 | Q>P | No |
ClinGen gnomAD |
|
|
CA356643728 rs1222450872 |
619 | Q>R | No |
ClinGen gnomAD |
|
|
CA2893049 rs763277787 |
621 | S>G | No |
ClinGen ExAC gnomAD |
|
|
CA2893047 rs775780200 |
621 | S>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs763277787 CA2893048 |
621 | S>R | No |
ClinGen ExAC gnomAD |
|
|
rs770083988 CA2893046 |
622 | S>F | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA356643701 rs1404170132 |
623 | S>F | No |
ClinGen gnomAD |
|
|
CA2893044 rs748232846 |
624 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA95695430 rs148725208 |
625 | D>G | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA2893043 rs148725208 |
625 | D>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA356643680 rs1339139106 |
626 | K>N | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 627 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA356643673 rs1295438015 |
627 | K>N | No |
ClinGen TOPMed gnomAD |
|
| rs201668482 | 628 | H>= | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2893042 rs746587538 |
628 | H>R | No |
ClinGen ExAC gnomAD |
|
|
rs760243930 CA2893020 |
630 | A>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs748034378 CA2893017 |
631 | K>R | No |
ClinGen ExAC gnomAD |
|
|
CA2893015 rs768491668 |
633 | G>D | No |
ClinGen ExAC gnomAD |
|
|
rs778771799 CA2893016 |
633 | G>R | No |
ClinGen ExAC gnomAD |
|
|
CA2893014 COSM420593 rs55727832 |
636 | S>F | urinary_tract [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC TOPMed gnomAD |
|
CA2893011 rs147227437 |
637 | G>S | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1298681724 CA356642862 |
637 | G>V | No |
ClinGen gnomAD |
|
|
CA2893009 rs61748745 |
640 | D>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA356642806 rs61748745 |
640 | D>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs374867437 CA356642789 |
641 | G>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA95694246 rs1135544 |
641 | G>S | No |
ClinGen TOPMed gnomAD |
|
|
COSM481246 rs374867437 CA2893008 |
641 | G>V | kidney Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs755342067 CA2893006 |
642 | S>F | No |
ClinGen ExAC gnomAD |
|
|
rs754209348 CA2893005 |
646 | A>G | No |
ClinGen ExAC gnomAD |
|
|
rs1205041770 CA356642705 |
647 | A>T | No |
ClinGen gnomAD |
|
|
rs766790092 CA2893004 |
647 | A>V | Variant assessed as Somatic; 4.622e-05 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs1210803086 CA356642623 |
652 | P>L | No |
ClinGen gnomAD |
|
|
CA2893001 rs767080058 |
652 | P>S | No |
ClinGen ExAC gnomAD |
|
|
CA2892999 rs774313023 |
653 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs761473475 CA2893000 |
653 | P>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs768524441 CA2892998 |
655 | V>I | No |
ClinGen ExAC gnomAD |
|
|
CA356642573 rs1318653305 |
656 | G>D | No |
ClinGen gnomAD |
|
|
CA356642563 rs1418708823 |
657 | K>T | No |
ClinGen TOPMed |
|
|
rs749270095 CA2892997 |
658 | T>N | No |
ClinGen ExAC gnomAD |
|
|
rs775104115 CA356642500 |
662 | S>P | No |
ClinGen ExAC gnomAD |
|
|
rs775104115 CA2892996 |
662 | S>T | No |
ClinGen ExAC gnomAD |
|
|
rs1322730316 CA356642475 |
664 | V>M | No |
ClinGen gnomAD |
|
|
CA2892994 rs747174315 |
665 | C>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2892995 rs368938991 |
665 | C>R | No |
ClinGen ESP ExAC gnomAD |
|
|
rs747174315 CA356642458 |
665 | C>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2892968 rs756514185 |
667 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA356641630 rs1258552616 |
670 | Y>H | No |
ClinGen TOPMed |
|
|
rs28903096 CA356641584 CA2892966 |
673 | V>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs28903096 CA2892965 |
673 | V>M | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs145107601 CA95692937 |
674 | E>A | No |
ClinGen ESP TOPMed |
|
|
rs941829262 CA95692935 |
676 | N>S | No |
ClinGen TOPMed gnomAD |
|
|
CA2892962 rs762579159 |
681 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
rs776364634 CA2892958 |
682 | S>R | No |
ClinGen ExAC gnomAD |
|
|
rs759308496 CA2892959 |
682 | S>T | No |
ClinGen ExAC gnomAD |
|
|
CA2892957 rs138470471 |
683 | K>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1578116522 CA356641454 |
684 | S>I | No |
ClinGen Ensembl |
|
|
rs761874961 CA2892956 |
685 | S>G | No |
ClinGen ExAC gnomAD |
|
|
COSM1055224 rs370446342 CA2892955 |
688 | A>V | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA356641396 rs1472514752 |
689 | I>F | No |
ClinGen TOPMed gnomAD |
|
|
rs368198058 CA2892952 |
691 | A>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA2892950 VAR_020657 rs11932767 RCV000966907 |
692 | E>D | No |
ClinGen ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
| TCGA novel | 692 | E>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1215653913 CA356641344 COSM3696643 |
693 | S>L | large_intestine [Cosmic] | No |
ClinGen cosmic curated gnomAD |
|
CA356641296 rs1560594682 |
698 | S>N | No |
ClinGen Ensembl |
|
|
rs1239961331 CA356641285 |
699 | I>F | No |
ClinGen TOPMed |
|
| TCGA novel | 699 | I>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs781015457 CA95692886 |
701 | G>D | No |
ClinGen Ensembl |
|
|
CA2892948 rs757653219 |
704 | S>A | No |
ClinGen ExAC gnomAD |
|
|
rs777334711 CA2892929 |
705 | N>K | No |
ClinGen ExAC gnomAD |
|
|
CA2892927 rs376187267 |
707 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs747438761 CA2892926 |
711 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs564171683 CA2892925 |
713 | T>A | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA2892924 rs142517282 |
713 | T>M | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA2892923 rs142517282 |
713 | T>R | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1292187854 CA356641036 |
714 | K>R | No |
ClinGen gnomAD |
|
|
CA356641019 rs1350708315 |
716 | A>V | No |
ClinGen gnomAD |
|
|
CA356641017 rs2306598 |
717 | L>F | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA2892922 rs2306598 |
717 | L>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA95691758 rs930143957 |
719 | M>V | No |
ClinGen Ensembl |
|
|
rs1560593573 CA356640973 |
723 | D>G | No |
ClinGen Ensembl |
|
| TCGA novel | 723 | D>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs766409944 CA2892918 |
728 | N>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs750181204 CA2892916 |
732 | G>R | No |
ClinGen ExAC gnomAD |
|
|
CA356640895 rs1246960748 |
734 | I>T | No |
ClinGen TOPMed gnomAD |
|
|
rs773587132 CA2892905 |
738 | I>F | No |
ClinGen ExAC gnomAD |
|
|
CA356640850 rs1380486322 |
739 | G>S | No |
ClinGen TOPMed |
|
|
rs1294463605 CA356640842 |
740 | L>R | No |
ClinGen TOPMed gnomAD |
|
|
CA356640828 rs1578114006 |
742 | K>N | No |
ClinGen Ensembl |
|
|
CA2892904 rs577715030 |
743 | H>R | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1425676226 CA356640824 |
743 | H>Y | No |
ClinGen gnomAD |
|
|
CA356640818 rs1437474171 |
744 | T>A | No |
ClinGen gnomAD |
|
|
CA356640810 rs1280310569 |
745 | K>R | No |
ClinGen gnomAD |
|
|
CA95691507 rs12502450 |
748 | I>N | No |
ClinGen Ensembl |
|
|
rs1237165224 CA356640785 |
749 | I>V | No |
ClinGen gnomAD |
|
|
CA356640776 rs1178739379 |
750 | C>Y | No |
ClinGen gnomAD |
|
|
CA2892903 rs558110225 |
751 | M>V | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1359115561 CA356640754 |
753 | N>D | No |
ClinGen TOPMed |
|
|
CA2892902 rs778599319 |
753 | N>S | No |
ClinGen ExAC gnomAD |
|
|
rs1282996098 CA356640675 |
758 | P>L | No |
ClinGen gnomAD |
|
|
rs748839045 CA2892900 |
760 | I>F | No |
ClinGen ExAC |
|
|
rs1241292836 CA356640639 |
761 | R>C | No |
ClinGen TOPMed gnomAD |
|
|
COSM1055223 rs774151006 CA2892899 |
761 | R>H | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
CA2892898 rs774151006 |
761 | R>L | No |
ClinGen ExAC gnomAD |
|
|
CA2892897 rs750328833 |
762 | S>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA356640612 rs1215156008 |
764 | V>I | No |
ClinGen TOPMed |
|
|
CA2892896 rs767280898 |
765 | H>R | No |
ClinGen ExAC gnomAD |
|
|
rs1282724899 CA356640580 |
766 | Y>C | No |
ClinGen gnomAD |
|
|
CA2892895 rs757175937 |
766 | Y>H | No |
ClinGen ExAC gnomAD |
|
|
CA2892894 rs752963051 |
767 | C>S | No |
ClinGen ExAC gnomAD |
|
|
CA356640525 rs1560593222 |
770 | L>V | No |
ClinGen Ensembl |
|
|
rs765595532 CA2892893 |
771 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA2892892 rs147804632 |
771 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA2892890 rs201195147 |
773 | Q>P | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs940269437 CA95691421 |
775 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
rs199688793 CA356640449 |
776 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs199688793 CA2892887 |
776 | R>Q | Variant assessed as Somatic; 4.754e-05 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA2892888 rs773606833 |
776 | R>W | No |
ClinGen ExAC gnomAD |
|
|
COSM177763 rs1304775320 CA356640401 |
779 | Q>H | large_intestine Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
rs768055158 CA2892868 |
784 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2892867 rs369274424 |
785 | M>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 786 | S>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1275594880 CA356640259 |
787 | I>T | No |
ClinGen TOPMed |
|
|
rs774655717 CA2892866 |
787 | I>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs769010068 CA2892865 |
788 | A>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1221752406 CA356640231 |
789 | F>Y | No |
ClinGen TOPMed |
|
|
CA356640215 rs1245651984 |
790 | K>I | No |
ClinGen gnomAD |
|
|
rs762605626 CA2892864 |
795 | I>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA95691227 rs144320551 |
796 | P>H | No |
ClinGen TOPMed gnomAD |
|
|
COSM110047 CA95691219 rs144320551 |
796 | P>L | skin [Cosmic] | No |
ClinGen cosmic curated TOPMed gnomAD |
|
rs775059245 CA2892863 |
796 | P>S | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 797 | P>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs769341933 CA2892862 |
799 | A>T | No |
ClinGen ExAC gnomAD |
|
|
CA356640013 rs1383685207 |
805 | L>F | No |
ClinGen gnomAD |
|
|
rs1197434795 CA356639995 |
807 | A>T | No |
ClinGen TOPMed |
|
|
CA2892860 rs144389543 |
809 | Q>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA2892861 rs144389543 |
809 | Q>P | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1461514755 CA356639934 |
811 | I>V | No |
ClinGen gnomAD |
|
|
rs866576240 CA95691202 |
812 | R>K | No |
ClinGen Ensembl |
|
|
rs370085283 CA2892838 |
814 | V>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs541683474 CA2892837 COSM1581597 |
816 | H>Q | haematopoietic_and_lymphoid_tissue [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC TOPMed gnomAD |
|
rs140467780 CA2892836 |
817 | N>S | No |
ClinGen ESP ExAC TOPMed |
|
|
CA95691007 rs779768249 |
819 | S>N | No |
ClinGen Ensembl |
|
|
rs1229526080 CA356639789 |
821 | W>S | No |
ClinGen TOPMed |
|
|
rs201073589 CA95690987 |
822 | C>Y | No |
ClinGen 1000Genomes TOPMed |
|
|
CA356639757 rs1178128210 |
824 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA356639722 rs1273637156 |
827 | A>V | No |
ClinGen gnomAD |
|
|
rs781188723 CA2892834 |
829 | T>A | No |
ClinGen ExAC gnomAD |
|
|
CA2892833 rs535971979 COSM1670947 |
830 | Y>C | prostate [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA356639665 rs1234716742 |
831 | D>G | No |
ClinGen gnomAD |
|
|
rs1372749611 CA356639650 |
832 | Q>L | No |
ClinGen gnomAD |
|
|
rs946365296 CA95690966 |
833 | A>S | No |
ClinGen TOPMed gnomAD |
|
|
rs946365296 CA356639644 |
833 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
rs752053155 CA2892832 |
834 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs764625447 CA2892831 |
835 | A>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs914951575 CA95690947 |
837 | S>C | No |
ClinGen gnomAD |
|
|
rs1436920232 CA356639603 |
838 | H>R | No |
ClinGen gnomAD |
|
|
CA2892829 rs752953383 |
838 | H>Y | No |
ClinGen ExAC gnomAD |
|
|
CA2892827 rs759045902 |
839 | R>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1470562542 CA356639586 |
840 | A>T | No |
ClinGen gnomAD |
|
|
rs1234737188 CA356639573 |
841 | K>E | No |
ClinGen gnomAD |
|
|
rs914428458 CA95690903 |
841 | K>R | No |
ClinGen TOPMed gnomAD |
|
|
rs765974271 CA2892825 |
843 | D>G | No |
ClinGen ExAC gnomAD |
|
|
CA95690876 rs760329608 |
844 | I>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs760329608 CA2892824 |
844 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA356639495 rs1367790921 |
846 | M>T | No |
ClinGen TOPMed |
|
|
CA2892822 rs771956490 |
846 | M>V | No |
ClinGen ExAC gnomAD |
|
|
rs199897885 CA2892801 |
848 | P>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
| TCGA novel | 848 | P>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2892799 rs774401356 |
852 | A>S | No |
ClinGen ExAC gnomAD |
|
|
rs377090257 CA95689200 |
852 | A>V | No |
ClinGen ESP TOPMed gnomAD |
|
|
rs768328174 CA95689195 |
853 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
COSM1567343 rs762772857 CA2892797 |
853 | R>Q | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
rs768328174 CA2892798 |
853 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1438073765 CA356638788 |
854 | K>E | No |
ClinGen TOPMed |
|
|
CA2892795 rs771093293 |
857 | A>T | No |
ClinGen ExAC gnomAD |
|
|
CA356638714 rs1475596448 |
858 | A>S | No |
ClinGen gnomAD |
|
|
rs1218853685 CA356638621 |
864 | H>Y | No |
ClinGen gnomAD |
|
|
CA2892793 rs374383197 |
865 | M>V | No |
ClinGen ESP ExAC gnomAD |
|
|
CA95689146 rs1017070617 |
866 | S>P | No |
ClinGen TOPMed gnomAD |
|
|
CA356638537 rs1214987412 |
867 | L>P | No |
ClinGen gnomAD |
|
|
CA356638517 rs1272868342 |
868 | V>G | No |
ClinGen gnomAD |
|
|
CA95689139 CA2892792 rs150822138 |
868 | V>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA2892789 rs755363991 |
872 | D>H | No |
ClinGen ExAC gnomAD |
|
|
rs754307909 CA2892788 |
874 | F>L | No |
ClinGen ExAC |
|
|
CA95689095 rs886966688 |
875 | F>L | No |
ClinGen TOPMed gnomAD |
|
|
CA2892787 rs780591988 |
876 | H>R | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 879 | S>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1464085133 CA356638297 |
880 | I>V | No |
ClinGen TOPMed gnomAD |
|
|
rs755790926 CA2892786 |
881 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA356638263 rs1368858733 |
882 | P>S | No |
ClinGen TOPMed |
|
|
rs750107361 CA2892785 |
883 | L>V | No |
ClinGen ExAC |
|
|
rs140065280 CA2892782 COSM481245 |
885 | V>I | kidney Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs1256226898 CA356638130 |
888 | N>D | No |
ClinGen TOPMed gnomAD |
|
|
CA356638102 rs1253219295 |
890 | I>V | No |
ClinGen gnomAD |
|
|
CA2892780 rs762899997 |
891 | H>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA95689027 rs142870671 |
891 | H>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs890880662 CA95688995 |
892 | V>M | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 896 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1482464262 CA356638016 |
897 | A>S | No |
ClinGen TOPMed |
|
|
CA2892776 rs773542334 |
898 | G>E | No |
ClinGen ExAC gnomAD |
|
|
CA2892762 rs765004911 |
899 | G>D | No |
ClinGen ExAC gnomAD |
|
|
rs765004911 CA2892761 |
899 | G>V | No |
ClinGen ExAC gnomAD |
|
|
rs759394739 CA2892760 |
901 | M>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1307850428 CA356637934 |
901 | M>L | No |
ClinGen gnomAD |
|
|
CA95688783 rs903227099 |
901 | M>T | No |
ClinGen Ensembl |
|
|
CA356637932 rs1307850428 |
901 | M>V | No |
ClinGen gnomAD |
|
|
rs78870520 CA2892759 |
902 | K>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs78870520 CA95688773 |
902 | K>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs767829817 CA2892758 |
903 | K>E | No |
ClinGen ExAC gnomAD |
|
|
rs774454174 CA2892756 |
906 | M>I | No |
ClinGen ExAC gnomAD |
|
|
rs768864359 CA2892755 |
907 | L>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs768864359 CA356637851 |
907 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1362838626 CA356637755 |
913 | D>E | No |
ClinGen gnomAD |
|
|
CA95688714 rs975067705 |
915 | I>L | No |
ClinGen TOPMed gnomAD |
|
|
rs975067705 CA356637737 |
915 | I>V | No |
ClinGen TOPMed gnomAD |
|
|
CA2892751 rs746289718 |
917 | D>A | No |
ClinGen ExAC gnomAD |
|
|
CA356637709 rs1187786692 |
917 | D>Y | No |
ClinGen gnomAD |
|
|
CA356637677 rs1170040935 |
919 | D>E | No |
ClinGen gnomAD |
|
|
CA356637655 rs1345366198 |
923 | S>G | No |
ClinGen TOPMed |
|
|
rs746646125 CA2892748 |
924 | Q>R | No |
ClinGen ExAC gnomAD |
|
|
CA2892746 rs757962310 |
925 | I>M | No |
ClinGen ExAC gnomAD |
|
|
rs777206921 CA2892747 |
925 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA2892744 rs765201139 |
926 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
COSM3783802 rs752627380 CA2892745 |
926 | R>W | Variant assessed as Somatic; 0.0 impact. prostate [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
rs754708326 CA2892743 |
927 | S>N | No |
ClinGen ExAC gnomAD |
|
|
rs375229636 CA2892742 |
932 | S>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1452932688 CA356637584 COSM1581596 |
933 | L>F | haematopoietic_and_lymphoid_tissue [Cosmic] | No |
ClinGen cosmic curated TOPMed |
|
rs1025907552 CA95688637 |
936 | A>P | No |
ClinGen TOPMed |
|
|
rs372275301 CA2892741 |
936 | A>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 938 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2892720 rs56273953 |
939 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs764456357 CA2892719 |
941 | A>G | No |
ClinGen ExAC gnomAD |
|
|
CA356637183 rs1578103629 |
944 | L>F | No |
ClinGen Ensembl |
|
| TCGA novel | 944 | L>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1461904070 CA356637168 |
946 | G>A | No |
ClinGen gnomAD |
|
|
rs752781267 CA2892717 |
947 | E>G | No |
ClinGen ExAC gnomAD |
|
|
rs535419863 CA2892716 |
949 | M>I | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs777062272 CA2892714 |
952 | Y>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs777062272 CA356637127 |
952 | Y>F | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 953 | M>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1469849381 CA356637122 |
953 | M>L | No |
ClinGen TOPMed gnomAD |
|
|
CA356637124 rs1469849381 COSM3381016 |
953 | M>V | pancreas [Cosmic] | No |
ClinGen cosmic curated TOPMed gnomAD |
|
RCV000910098 rs17335452 CA2892713 VAR_020658 |
955 | Q>K | No |
ClinGen ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs1458398102 CA356637097 |
956 | F>L | No |
ClinGen TOPMed |
|
|
CA95686211 rs915040518 |
957 | P>L | No |
ClinGen Ensembl |
|
|
rs371369749 CA2892712 |
958 | T>I | No |
ClinGen ESP ExAC gnomAD |
|
|
CA2892711 rs772831646 |
959 | F>Y | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 966 | H>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2892710 rs771665656 |
966 | H>Y | No |
ClinGen ExAC gnomAD |
|
|
rs1229318967 CA356636970 |
967 | S>* | No |
ClinGen gnomAD |
|
|
CA356636971 rs1229318967 |
967 | S>L | No |
ClinGen gnomAD |
|
|
rs1404139713 CA356636956 |
969 | T>I | No |
ClinGen TOPMed |
|
|
CA356636943 rs1342045831 |
971 | K>R | No |
ClinGen TOPMed |
|
|
CA356636937 rs1372607221 |
972 | H>Y | No |
ClinGen gnomAD |
|
|
rs768068878 CA2892707 |
973 | D>H | No |
ClinGen ExAC gnomAD |
|
|
rs867900340 CA95686181 |
974 | R>C | No |
ClinGen Ensembl |
|
|
CA2892706 rs749239449 |
974 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs779893192 CA2892705 |
977 | Q>R | No |
ClinGen ExAC gnomAD |
|
|
CA2892704 rs755911170 |
980 | A>G | No |
ClinGen ExAC gnomAD |
|
|
CA95686168 rs755911170 |
980 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs1331380914 CA356636873 |
982 | H>P | No |
ClinGen gnomAD |
|
|
rs988390344 CA95686142 |
983 | M>I | No |
ClinGen Ensembl |
|
|
CA2892700 rs752979455 |
983 | M>T | No |
ClinGen ExAC gnomAD |
|
|
CA2892701 rs758624735 |
983 | M>V | No |
ClinGen ExAC gnomAD |
|
|
rs1181166261 CA356636859 |
984 | S>N | No |
ClinGen gnomAD |
|
|
rs748376062 CA2892680 |
987 | T>S | No |
ClinGen ExAC gnomAD |
|
|
rs973935017 CA95683842 |
990 | S>G | No |
ClinGen Ensembl |
|
|
CA2892678 rs755063786 |
992 | R>T | No |
ClinGen ExAC gnomAD |
|
|
CA95683825 rs963487293 |
994 | V>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
|
CA2892676 rs766512359 |
996 | M>V | No |
ClinGen ExAC gnomAD |
|
|
CA356636678 rs1470519769 |
997 | D>N | No |
ClinGen TOPMed gnomAD |
|
|
rs1578098579 CA356636649 |
1001 | L>F | No |
ClinGen Ensembl |
|
|
rs762236070 CA2892672 |
1003 | R>K | No |
ClinGen ExAC gnomAD |
|
|
CA356636629 rs774029496 |
1004 | D>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA95683790 rs983618925 |
1004 | D>H | No |
ClinGen TOPMed gnomAD |
|
|
rs763600225 CA2892670 |
1006 | L>F | No |
ClinGen ExAC gnomAD |
|
|
CA2892668 rs774793398 |
1007 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2892669 rs774793398 |
1007 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs770817146 CA2892664 |
1017 | G>R | No |
ClinGen ExAC gnomAD |
|
|
rs1430019393 CA356636539 |
1019 | Q>E | No |
ClinGen TOPMed |
|
|
rs147775081 CA2892663 |
1019 | Q>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA356636508 rs1560585707 |
1023 | A>V | No |
ClinGen Ensembl |
|
|
rs903676685 CA95683737 |
1024 | L>R | No |
ClinGen TOPMed |
|
|
rs1334781039 CA356636497 |
1025 | M>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs777646834 CA2892662 |
1025 | M>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs755117925 CA2892661 |
1026 | D>G | No |
ClinGen ExAC gnomAD |
|
|
CA356636485 rs1230415909 |
1027 | T>A | No |
ClinGen gnomAD |
|
|
CA356636465 rs1431841392 |
1030 | L>M | No |
ClinGen gnomAD |
|
|
rs1328417067 CA356636434 |
1033 | E>D | No |
ClinGen TOPMed gnomAD |
|
|
rs779942577 CA2892659 |
1034 | D>H | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 1036 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs756247646 CA2892658 |
1038 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA2892657 rs750929464 |
1039 | M>V | No |
ClinGen ExAC gnomAD |
|
|
rs1304356415 CA356636374 |
1041 | I>S | No |
ClinGen gnomAD |
|
|
CA2892656 rs768056946 |
1043 | S>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs757780127 CA2892655 |
1043 | S>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA356636346 rs1030509258 |
1045 | G>D | No |
ClinGen gnomAD |
|
|
CA95683717 rs1030509258 |
1045 | G>V | No |
ClinGen gnomAD |
|
|
rs997813421 CA95683716 |
1049 | S>T | No |
ClinGen TOPMed gnomAD |
|
|
rs764520516 CA2892653 |
1051 | F>V | No |
ClinGen ExAC gnomAD |
|
|
rs1326050338 CA356636299 |
1052 | S>L | No |
ClinGen TOPMed |
|
|
CA2892651 rs775269581 |
1053 | K>E | No |
ClinGen ExAC TOPMed |
|
|
rs1224488198 CA356636255 |
1056 | P>S | No |
ClinGen gnomAD |
|
|
CA356636248 rs1306234277 |
1057 | K>Q | No |
ClinGen gnomAD |
|
|
rs1321450394 CA356636093 |
1061 | A>T | No |
ClinGen TOPMed |
|
|
CA356636065 rs1258732166 |
1062 | F>L | No |
ClinGen gnomAD |
|
|
CA2892634 rs752260406 |
1063 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1233896388 CA356636014 |
1066 | Y>* | No |
ClinGen TOPMed gnomAD |
|
|
CA95682856 rs946285194 |
1067 | N>S | No |
ClinGen TOPMed gnomAD |
|
|
CA2892633 rs765030999 |
1067 | N>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1303571019 CA356635993 |
1068 | K>E | No |
ClinGen gnomAD |
|
|
CA356635976 rs1222086660 |
1069 | E>K | No |
ClinGen gnomAD |
|
|
CA2892632 rs759284813 |
1071 | H>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2892631 rs753359174 |
1072 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs765992803 CA2892630 COSM254918 |
1074 | P>A | Variant assessed as Somatic; 0.0 impact. urinary_tract [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
CA95682818 rs1007672189 |
1074 | P>L | No |
ClinGen gnomAD |
|
|
rs142067677 CA2892627 |
1075 | Y>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1057751 CA95682804 |
1076 | S>A | No |
ClinGen Ensembl |
|
|
rs775671826 CA2892625 |
1079 | A>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA95682788 rs903917735 |
1081 | K>E | No |
ClinGen TOPMed gnomAD |
|
|
CA95682794 rs903917735 |
1081 | K>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs368875528 CA2892624 |
1082 | A>S | No |
ClinGen ESP ExAC TOPMed |
|
|
rs746091232 CA2892623 |
1085 | H>Y | No |
ClinGen ExAC gnomAD |
|
|
rs538858430 CA2892622 |
1087 | T>I | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA356635774 rs538858430 |
1087 | T>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs771098449 CA2892621 |
1088 | S>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs747464005 CA2892620 |
1090 | S>F | No |
ClinGen ExAC gnomAD |
|
|
CA356635727 rs1486129072 |
1090 | S>P | No |
ClinGen gnomAD |
|
|
rs1486129072 CA356635730 |
1090 | S>T | No |
ClinGen gnomAD |
|
| TCGA novel | 1091 | L>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
COSM175341 CA2892618 rs758666616 |
1093 | S>L | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
rs1285016083 CA356635613 |
1096 | N>S | No |
ClinGen gnomAD |
|
|
rs1291228921 CA356635544 |
1100 | N>H | No |
ClinGen TOPMed gnomAD |
|
|
rs1230456191 CA356635517 |
1101 | E>G | No |
ClinGen Ensembl |
|
|
rs1450848204 CA356635496 |
1102 | D>G | No |
ClinGen TOPMed |
|
|
rs377688011 COSM1539973 CA2892614 |
1105 | Q>* | lung Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs549951885 CA2892612 |
1106 | S>C | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA356635408 rs1360400460 |
1107 | D>E | No |
ClinGen gnomAD |
|
|
CA95682668 rs892729415 |
1107 | D>V | No |
ClinGen Ensembl |
|
|
CA356635311 rs1351774094 |
1113 | A>D | No |
ClinGen TOPMed |
|
|
rs1288643281 CA356635316 |
1113 | A>P | No |
ClinGen gnomAD |
|
|
rs1451149913 CA356635271 |
1115 | E>D | No |
ClinGen TOPMed gnomAD |
|
|
CA356635217 rs1431812840 |
1119 | M>K | No |
ClinGen gnomAD |
|
|
rs1347153662 CA356635199 |
1120 | I>F | No |
ClinGen gnomAD |
|
|
CA356634780 rs1164773602 |
1123 | K>N | No |
ClinGen TOPMed gnomAD |
|
|
CA95682173 rs1004627601 |
1124 | T>K | No |
ClinGen TOPMed gnomAD |
|
|
CA356634776 rs1004627601 |
1124 | T>R | No |
ClinGen TOPMed gnomAD |
|
|
CA2892594 rs748946392 |
1125 | K>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1434820858 CA356634754 |
1128 | K>E | No |
ClinGen TOPMed gnomAD |
|
|
rs1434820858 CA356634755 |
1128 | K>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs755561864 CA2892592 |
1129 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs749903526 CA356634727 |
1132 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs749903526 CA2892591 |
1132 | P>T | No |
ClinGen ExAC gnomAD |
|
|
CA356634703 rs1190631383 |
1135 | D>G | No |
ClinGen gnomAD |
|
|
CA356634691 rs1560583763 |
1137 | E>K | No |
ClinGen Ensembl |
|
|
rs1259455289 CA356634680 |
1138 | P>L | No |
ClinGen gnomAD |
|
|
CA95682144 rs1023797166 |
1144 | K>R | No |
ClinGen Ensembl |
|
|
CA356634631 rs1252432568 |
1145 | S>T | No |
ClinGen gnomAD |
|
|
rs766937786 CA2892589 |
1146 | S>A | No |
ClinGen ExAC gnomAD |
|
|
rs17288828 VAR_020659 CA2892588 |
1146 | S>L | No |
ClinGen UniProt ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA2892586 rs369353126 |
1147 | K>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs149767968 CA2892585 |
1149 | K>R | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
1 associated diseases with P35251
[MIM: 614575]: Cerebellar ataxia, neuropathy, and vestibular areflexia syndrome (CANVAS)
An autosomal recessive neurologic disease characterized by imbalance, cerebellar ataxia, impaired vestibular function, and non-length-dependent sensory deficit. {ECO:0000269|PubMed:30926972, ECO:0000269|PubMed:31230722}. Note=The disease is caused by variants affecting the gene represented in this entry. The disease is caused by intronic AAGGG repeat expansions in intron 2. {ECO:0000269|PubMed:30926972, ECO:0000269|PubMed:31230722}.
Without disease ID
- An autosomal recessive neurologic disease characterized by imbalance, cerebellar ataxia, impaired vestibular function, and non-length-dependent sensory deficit. {ECO:0000269|PubMed:30926972, ECO:0000269|PubMed:31230722}. Note=The disease is caused by variants affecting the gene represented in this entry. The disease is caused by intronic AAGGG repeat expansions in intron 2. {ECO:0000269|PubMed:30926972, ECO:0000269|PubMed:31230722}.
7 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
| DNA replication factor C complex | A complex that loads the DNA polymerase processivity factor proliferating cell nuclear antigen (PCNA) onto DNA, thereby permitting processive DNA synthesis catalyzed by DNA polymerase. In eukaryotes the complex consists of five polypeptides. |
| Elg1 RFC-like complex | A pentameric replication factor C (RLC) complex, which unloads the DNA polymerase processivity factor proliferating cell nuclear antigen (PCNA) from chromatin and has roles in telomere length regulation and other aspects of genome stability. In Saccharomyces the subunits are known as Elg1p, Rfc2p, Rfc3p, Rfc4p, and Rfc5p. |
| extracellular exosome | A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm. |
| nucleolus | A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. |
| nucleoplasm | That part of the nuclear content other than the chromosomes or the nucleolus. |
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
9 GO annotations of molecular function
| Name | Definition |
|---|---|
| ATP binding | Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
| ATP hydrolysis activity | Catalysis of the reaction: ATP + H2O = ADP + H+ phosphate. ATP hydrolysis is used in some reactions as an energy source, for example to catalyze a reaction or drive transport against a concentration gradient. |
| DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
| DNA clamp loader activity | Facilitating the opening of the ring structure of the PCNA complex, or any of the related sliding clamp complexes, and their closing around the DNA duplex, driven by ATP hydrolysis. |
| DNA clamp unloader activity | Facilitating the opening of the ring structure of the PCNA complex, or any of the related sliding clamp complexes, and their removal from the DNA duplex, driven by ATP hydrolysis. |
| double-stranded DNA binding | Binding to double-stranded DNA. |
| enzyme activator activity | Binds to and increases the activity of an enzyme. |
| protein domain specific binding | Binding to a specific domain of a protein. |
| sequence-specific DNA binding | Binding to DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
5 GO annotations of biological process
| Name | Definition |
|---|---|
| DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. |
| DNA-templated DNA replication | A DNA replication process that uses parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands. |
| negative regulation of transcription by RNA polymerase II | Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II. |
| positive regulation of DNA-templated transcription | Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription. |
| telomere maintenance via telomerase | The maintenance of proper telomeric length by the addition of telomeric repeats by telomerase. |
3 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| P38630 | RFC1 | Replication factor C subunit 1 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | PR |
| Q8WVB6 | CHTF18 | Chromosome transmission fidelity protein 18 homolog | Homo sapiens (Human) | PR |
| P35601 | Rfc1 | Replication factor C subunit 1 | Mus musculus (Mouse) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MDIRKFFGVI | PSGKKLVSET | VKKNEKTKSD | EETLKAKKGI | KEIKVNSSRK | EDDFKQKQPS |
| 70 | 80 | 90 | 100 | 110 | 120 |
| KKKRIIYDSD | SESEETLQVK | NAKKPPEKLP | VSSKPGKISR | QDPVTYISET | DEEDDFMCKK |
| 130 | 140 | 150 | 160 | 170 | 180 |
| AASKSKENGR | STNSHLGTSN | MKKNEENTKT | KNKPLSPIKL | TPTSVLDYFG | TGSVQRSNKK |
| 190 | 200 | 210 | 220 | 230 | 240 |
| MVASKRKELS | QNTDESGLND | EAIAKQLQLD | EDAELERQLH | EDEEFARTLA | MLDEEPKTKK |
| 250 | 260 | 270 | 280 | 290 | 300 |
| ARKDTEAGET | FSSVQANLSK | AEKHKYPHKV | KTAQVSDERK | SYSPRKQSKY | ESSKESQQHS |
| 310 | 320 | 330 | 340 | 350 | 360 |
| KSSADKIGEV | SSPKASSKLA | IMKRKEESSY | KEIEPVASKR | KENAIKLKGE | TKTPKKTKSS |
| 370 | 380 | 390 | 400 | 410 | 420 |
| PAKKESVSPE | DSEKKRTNYQ | AYRSYLNREG | PKALGSKEIP | KGAENCLEGL | IFVITGVLES |
| 430 | 440 | 450 | 460 | 470 | 480 |
| IERDEAKSLI | ERYGGKVTGN | VSKKTNYLVM | GRDSGQSKSD | KAAALGTKII | DEDGLLNLIR |
| 490 | 500 | 510 | 520 | 530 | 540 |
| TMPGKKSKYE | IAVETEMKKE | SKLERTPQKN | VQGKRKISPS | KKESESKKSR | PTSKRDSLAK |
| 550 | 560 | 570 | 580 | 590 | 600 |
| TIKKETDVFW | KSLDFKEQVA | EETSGDSKAR | NLADDSSENK | VENLLWVDKY | KPTSLKTIIG |
| 610 | 620 | 630 | 640 | 650 | 660 |
| QQGDQSCANK | LLRWLRNWQK | SSSEDKKHAA | KFGKFSGKDD | GSSFKAALLS | GPPGVGKTTT |
| 670 | 680 | 690 | 700 | 710 | 720 |
| ASLVCQELGY | SYVELNASDT | RSKSSLKAIV | AESLNNTSIK | GFYSNGAASS | VSTKHALIMD |
| 730 | 740 | 750 | 760 | 770 | 780 |
| EVDGMAGNED | RGGIQELIGL | IKHTKIPIIC | MCNDRNHPKI | RSLVHYCFDL | RFQRPRVEQI |
| 790 | 800 | 810 | 820 | 830 | 840 |
| KGAMMSIAFK | EGLKIPPPAM | NEIILGANQD | IRQVLHNLSM | WCARSKALTY | DQAKADSHRA |
| 850 | 860 | 870 | 880 | 890 | 900 |
| KKDIKMGPFD | VARKVFAAGE | ETAHMSLVDK | SDLFFHDYSI | APLFVQENYI | HVKPVAAGGD |
| 910 | 920 | 930 | 940 | 950 | 960 |
| MKKHLMLLSR | AADSICDGDL | VDSQIRSKQN | WSLLPAQAIY | ASVLPGELMR | GYMTQFPTFP |
| 970 | 980 | 990 | 1000 | 1010 | 1020 |
| SWLGKHSSTG | KHDRIVQDLA | LHMSLRTYSS | KRTVNMDYLS | LLRDALVQPL | TSQGVDGVQD |
| 1030 | 1040 | 1050 | 1060 | 1070 | 1080 |
| VVALMDTYYL | MKEDFENIME | ISSWGGKPSP | FSKLDPKVKA | AFTRAYNKEA | HLTPYSLQAI |
| 1090 | 1100 | 1110 | 1120 | 1130 | 1140 |
| KASRHSTSPS | LDSEYNEELN | EDDSQSDEKD | QDAIETDAMI | KKKTKSSKPS | KPEKDKEPRK |
| GKGKSSKK |