P35222
Gene name |
CTNNB1 (CTNNB, OK/SW-cl.35, PRO2286) |
Protein name |
Catenin beta-1 |
Names |
Beta-catenin |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:1499 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
37 structures for P35222
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| 1G3J | X-ray | 210 A | A/C | 133-664 | PDB |
| 1JDH | X-ray | 190 A | A | 135-663 | PDB |
| 1JPW | X-ray | 250 A | A/B/C | 131-670 | PDB |
| 1LUJ | X-ray | 250 A | A | 150-663 | PDB |
| 1P22 | X-ray | 295 A | C | 19-44 | PDB |
| 1QZ7 | X-ray | 220 A | A | 133-665 | PDB |
| 1T08 | X-ray | 210 A | A | 146-664 | PDB |
| 1TH1 | X-ray | 250 A | A/B | 133-664 | PDB |
| 2G57 | NMR | - | A | 19-44 | PDB |
| 2GL7 | X-ray | 260 A | A/D | 138-686 | PDB |
| 2Z6H | X-ray | 220 A | A | 138-781 | PDB |
| 3DIW | X-ray | 210 A | C/D | 772-781 | PDB |
| 3FQN | X-ray | 165 A | C | 30-39 | PDB |
| 3FQR | X-ray | 170 A | C | 30-39 | PDB |
| 3SL9 | X-ray | 220 A | A/B/E/G | 141-305 | PDB |
| 3SLA | X-ray | 250 A | A/B/C/D/E | 141-306 | PDB |
| 3TX7 | X-ray | 276 A | A | 138-663 | PDB |
| 4DJS | X-ray | 303 A | A | 148-665 | PDB |
| 6M90 | X-ray | 205 A | C | 17-48 | PDB |
| 6M91 | X-ray | 240 A | C | 17-48 | PDB |
| 6M92 | X-ray | 235 A | C | 17-48 | PDB |
| 6M93 | X-ray | 250 A | C | 17-48 | PDB |
| 6M94 | X-ray | 270 A | C | 17-48 | PDB |
| 6O9B | X-ray | 220 A | C | 41-49 | PDB |
| 6O9C | X-ray | 245 A | C | 41-49 | PDB |
| 6WLX | X-ray | 220 A | B | 671-677 | PDB |
| 6WNX | X-ray | 250 A | C/F/I | 31-39 | PDB |
| 7AFW | X-ray | 181 A | A | 141-305 | PDB |
| 7AR4 | X-ray | 260 A | AAA | 134-665 | PDB |
| 7UWI | X-ray | 232 A | A | 143-663 | PDB |
| 7UWO | X-ray | 275 A | A | 134-665 | PDB |
| 7ZRB | X-ray | 343 A | A/B | 133-664 | PDB |
| 8EI9 | X-ray | 390 A | A | 134-665 | PDB |
| 8EIA | X-ray | 360 A | A | 134-665 | PDB |
| 8EIB | X-ray | 376 A | A | 134-665 | PDB |
| 8EIC | X-ray | 262 A | A | 134-665 | PDB |
| AF-P35222-F1 | Predicted | AlphaFoldDB |
505 variants for P35222
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
CA16602676 COSM5747 rs121913394 RCV000419765 |
13 | A>T | oesophagus Melanoma stomach [Cosmic, ClinVar] | Yes |
ClinGen cosmic curated ClinVar Ensembl dbSNP |
|
RCV000786916 CA352228024 rs1575315288 COSM49161 |
15 | E>K | Severe intellectual disability-progressive spastic diplegia syndrome large_intestine [ClinVar, Cosmic] | Yes |
ClinGen cosmic curated ClinVar Ensembl dbSNP |
|
COSM5738 rs121913395 CA16602677 RCV000430055 |
21 | A>T | Melanoma Variant assessed as Somatic; impact. soft_tissue stomach [ClinVar, NCI-TCGA, Cosmic] | Yes |
ClinGen cosmic curated ClinVar Ensembl NCI-TCGA dbSNP |
|
RCV000440292 rs121913416 |
22 | V>missing | Melanoma [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000420898 rs77064436 CA16602679 COSM5706 |
22 | V>A | thyroid large_intestine Melanoma [Cosmic, ClinVar] | Yes |
ClinGen cosmic curated ClinVar ExAC dbSNP gnomAD |
|
rs121913417 RCV000431125 |
25 | W>missing | Melanoma [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000505548 rs1553630102 |
28 | Q>H | Hepatoblastoma [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000439506 COSM5690 RCV000421851 RCV000428408 RCV000438648 VAR_017614 RCV000422917 CA16602682 rs121913396 RCV000429284 RCV000421005 RCV000433870 RCV000443906 |
32 | D>A | Malignant neoplasm of body of uterus Medulloblastoma (mdb) liver NS Neoplasm of uterine cervix Melanoma central_nervous_system endometrium Hepatocellular carcinoma Gastric adenocarcinoma Prostate adenocarcinoma ovary pancreas Medulloblastoma Variant assessed as Somatic; impact. Malignant melanoma of skin hepatocellular carcinoma [ClinVar, Ensembl, Cosmic, NCI-TCGA, UniProt] | Yes |
ClinGen cosmic curated ClinVar UniProt Ensembl NCI-TCGA dbSNP |
|
RCV000433199 RCV000443060 RCV000437703 CA127265 RCV000417687 RCV000435333 RCV000443883 RCV000427896 COSM5681 rs121913396 RCV000087199 RCV000425010 RCV000427454 RCV000019140 |
32 | D>G | Malignant neoplasm of body of uterus Medulloblastoma (mdb) NS Neoplasm of uterine cervix skin central_nervous_system Hepatocellular carcinoma stomach pancreas Variant assessed as Somatic; impact. soft_tissue pituitary cervix liver Melanoma endometrium urinary_tract Gastric adenocarcinoma Prostate adenocarcinoma lung ovary Pilomatrixoma Medulloblastoma large_intestine prostate Malignant melanoma of skin [ClinVar, Ensembl, Cosmic, NCI-TCGA] | Yes |
ClinGen cosmic curated ClinVar Ensembl NCI-TCGA dbSNP |
|
RCV000429774 RCV000439366 CA16602521 RCV000429157 RCV000421744 RCV000422380 RCV000419510 RCV000430427 rs28931588 COSM5668 RCV000440025 RCV000437131 |
32 | D>H | pituitary Malignant neoplasm of body of uterus Medulloblastoma (mdb) NS liver Neoplasm of uterine cervix Melanoma endometrium urinary_tract central_nervous_system Hepatocellular carcinoma stomach Gastric adenocarcinoma testis Prostate adenocarcinoma ovary pancreas Medulloblastoma Variant assessed as Somatic; impact. prostate haematopoietic_and_lymphoid_tissue Malignant melanoma of skin [Cosmic, ClinVar, Ensembl, NCI-TCGA] | Yes |
ClinGen cosmic curated ClinVar Ensembl NCI-TCGA dbSNP |
|
RCV000425710 CA16602681 RCV000431551 COSM5672 RCV000432187 rs28931588 RCV000438971 RCV000444402 RCV000421306 RCV002221234 RCV000441401 RCV000432497 RCV000444118 RCV000423696 |
32 | D>N | pituitary Malignant neoplasm of body of uterus Medulloblastoma (mdb) biliary_tract liver Neoplasm of uterine cervix skin central_nervous_system endometrium Hepatocellular carcinoma stomach bone Gastric adenocarcinoma testis Prostate adenocarcinoma Endometrial neoplasm pancreas Medulloblastoma large_intestine Variant assessed as Somatic; impact. Esophageal squamous cell carcinoma prostate Malignant melanoma of skin [Cosmic, ClinVar, Ensembl, NCI-TCGA] | Yes |
ClinGen cosmic curated ClinVar Ensembl NCI-TCGA dbSNP |
|
COSM5691 RCV000429141 RCV000434746 RCV000430242 CA16602683 RCV000418872 RCV000440497 RCV000423474 RCV000436415 RCV000439390 rs121913396 RCV000422753 |
32 | D>V | pituitary Malignant neoplasm of body of uterus Medulloblastoma (mdb) liver Neoplasm of uterine cervix endometrium skin central_nervous_system Hepatocellular carcinoma Gastric adenocarcinoma testis Prostate adenocarcinoma Endometrial neoplasm pancreas Medulloblastoma Variant assessed as Somatic; impact. soft_tissue prostate Malignant melanoma of skin [Cosmic, ClinVar, Ensembl, NCI-TCGA] | Yes |
ClinGen cosmic curated ClinVar Ensembl NCI-TCGA dbSNP |
|
COSM5661 RCV000437074 RCV000430774 RCV000418154 RCV000426839 CA127271 RCV000438170 RCV000128842 RCV000019144 RCV000426162 RCV000420526 rs28931588 RCV000441036 RCV000419388 |
32 | D>Y | Malignant neoplasm of body of uterus Medulloblastoma (mdb) Neoplasm of uterine cervix skin central_nervous_system Hepatocellular carcinoma stomach pancreas Variant assessed as Somatic; impact. soft_tissue Craniopharyngioma Hepatoblastoma pituitary liver endometrium urinary_tract bone Gastric adenocarcinoma Prostate adenocarcinoma lung ovary Pilomatrixoma Medulloblastoma large_intestine prostate Malignant melanoma of skin [ClinVar, Ensembl, Cosmic, NCI-TCGA] | Yes |
ClinGen cosmic curated ClinVar Ensembl NCI-TCGA dbSNP |
|
rs1057519886 RCV000443586 RCV000420132 RCV000423241 COSM5683 CA16602831 RCV000439171 RCV000441600 RCV000424341 RCV000433966 RCV000440476 RCV000428518 RCV000430905 RCV000433324 |
33 | S>A | pituitary Malignant neoplasm of body of uterus Medulloblastoma (mdb) Carcinoma of esophagus liver endometrium central_nervous_system Hepatocellular carcinoma stomach Gastric adenocarcinoma Lung adenocarcinoma Prostate adenocarcinoma pancreas Medulloblastoma Variant assessed as Somatic; impact. Pancreatic adenocarcinoma soft_tissue Neoplasm of the large intestine Malignant melanoma of skin [Cosmic, ClinVar, Ensembl, NCI-TCGA] | Yes |
ClinGen cosmic curated ClinVar Ensembl NCI-TCGA dbSNP |
|
CA16602684 RCV000420513 RCV000432570 COSM5677 RCV000441027 RCV000425323 RCV000431875 RCV000438635 RCV000441671 RCV000432807 RCV000444407 RCV000421624 rs121913400 RCV000430769 RCV000419399 RCV000429684 RCV000421237 |
33 | S>C | Malignant neoplasm of body of uterus Medulloblastoma (mdb) NS skin central_nervous_system Hepatocellular carcinoma stomach testis Lung adenocarcinoma kidney Neoplasm of brain pancreas Variant assessed as Somatic; impact. Pancreatic adenocarcinoma Neoplasm of the parathyroid gland soft_tissue Neoplasm of the large intestine pituitary Carcinoma of esophagus biliary_tract liver endometrium bone Gastric adenocarcinoma parathyroid Prostate adenocarcinoma lung ovary oesophagus Medulloblastoma large_intestine prostate Neoplasm of ovary breast Malignant melanoma of skin [ClinVar, Ensembl, Cosmic, NCI-TCGA] | Yes |
ClinGen cosmic curated ClinVar Ensembl NCI-TCGA dbSNP |
|
RCV000019148 RCV000439964 COSM5669 RCV000437352 RCV000438845 RCV000423964 RCV000443180 RCV000428161 RCV000418596 rs121913400 RCV000019147 RCV000434049 CA127275 RCV000421635 RCV000420986 RCV000505658 |
33 | S>F | Malignant neoplasm of body of uterus Medulloblastoma (mdb) ADRENAL CORTICAL NEOPLASM skin central_nervous_system Hepatocellular carcinoma stomach Lung adenocarcinoma kidney pancreas Variant assessed as Somatic; impact. Pancreatic adenocarcinoma Neoplasm of the large intestine haematopoietic_and_lymphoid_tissue pituitary Carcinoma of esophagus liver urinary_tract endometrium bone Gastric adenocarcinoma Prostate adenocarcinoma lung ovary thyroid Pilomatrixoma Medulloblastoma large_intestine prostate Malignant melanoma of skin [ClinVar, Ensembl, Cosmic, NCI-TCGA] | Yes |
ClinGen cosmic curated ClinVar Ensembl NCI-TCGA dbSNP |
|
RCV000434673 rs1057519886 COSM5682 RCV000426101 RCV000436119 RCV000442478 RCV000418863 CA16602830 RCV000443305 RCV000417825 RCV000426401 RCV000433600 RCV000425263 RCV000435028 |
33 | S>P | pituitary Malignant neoplasm of body of uterus Medulloblastoma (mdb) Carcinoma of esophagus liver endometrium central_nervous_system skin Hepatocellular carcinoma stomach Gastric adenocarcinoma Lung adenocarcinoma Prostate adenocarcinoma ovary pancreas Medulloblastoma large_intestine Variant assessed as Somatic; impact. Pancreatic adenocarcinoma Neoplasm of the large intestine Malignant melanoma of skin [Cosmic, ClinVar, Ensembl, NCI-TCGA] | Yes |
ClinGen cosmic curated ClinVar Ensembl NCI-TCGA dbSNP |
|
RCV000435335 rs1057519886 RCV000427045 RCV000425706 RCV000437702 RCV000431206 COSM27311 RCV000420531 RCV000440157 CA16602832 RCV000432938 RCV000441880 RCV000418116 RCV000424580 |
33 | S>T | Malignant neoplasm of body of uterus Medulloblastoma (mdb) Carcinoma of esophagus liver Hepatocellular carcinoma Gastric adenocarcinoma Lung adenocarcinoma Prostate adenocarcinoma Medulloblastoma Variant assessed as Somatic; impact. Pancreatic adenocarcinoma Neoplasm of the large intestine breast Malignant melanoma of skin [ClinVar, Ensembl, Cosmic, NCI-TCGA] | Yes |
ClinGen cosmic curated ClinVar Ensembl NCI-TCGA dbSNP |
|
RCV000019138 RCV000435972 RCV000443834 RCV000424968 rs121913400 COSM5673 RCV000418289 RCV000019139 CA127263 RCV000435233 RCV000426112 RCV000437025 RCV000443472 RCV000444481 RCV000430278 RCV000423917 RCV000434171 VAR_017619 |
33 | S>Y | Malignant neoplasm of body of uterus Medulloblastoma (mdb) central_nervous_system skin Hepatocellular carcinoma stomach Lung adenocarcinoma Variant assessed as Somatic; impact. Pancreatic adenocarcinoma Neoplasm of the large intestine haematopoietic_and_lymphoid_tissue pituitary Carcinoma of colon Carcinoma of esophagus liver endometrium bone Gastric adenocarcinoma Prostate adenocarcinoma ovary Pilomatrixoma Endometrial neoplasm Medulloblastoma large_intestine prostate Malignant melanoma of skin colorectal cancer and PTR; constitutively active Wnt signaling pathway; enhances transactivation of target genes [ClinVar, Ensembl, Cosmic, NCI-TCGA, UniProt] | Yes |
ClinGen cosmic curated ClinVar UniProt Ensembl NCI-TCGA dbSNP |
|
RCV000427731 RCV000436689 RCV000442184 RCV000430157 RCV000442160 RCV000437750 CA16602829 RCV000427084 RCV000419447 rs28931589 |
34 | G>A | Malignant neoplasm of body of uterus Medulloblastoma (mdb) Adrenal cortex carcinoma Squamous cell carcinoma of the head and neck Medulloblastoma Hepatocellular carcinoma Gastric adenocarcinoma Lung adenocarcinoma Malignant melanoma of skin [ClinVar, Ensembl] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
RCV000426491 RCV000439589 RCV000443977 RCV000019149 COSM5671 CA127277 RCV000433938 RCV000422250 RCV000443851 VAR_017620 RCV000423249 RCV000432939 RCV000434538 rs28931589 |
34 | G>E | Malignant neoplasm of body of uterus Medulloblastoma (mdb) Adrenal cortex carcinoma liver central_nervous_system skin endometrium Hepatocellular carcinoma stomach Gastric adenocarcinoma testis Lung adenocarcinoma lung Squamous cell carcinoma of the head and neck ovary Pilomatrixoma Variant assessed as Somatic; 0.0 impact. Medulloblastoma large_intestine prostate Neoplasm of ovary Malignant melanoma of skin PTR [ClinVar, Ensembl, Cosmic, NCI-TCGA, UniProt] | Yes |
ClinGen cosmic curated ClinVar UniProt ExAC NCI-TCGA dbSNP gnomAD |
|
VAR_017621 CA16602686 RCV000438599 RCV000438776 COSM5686 RCV000436663 RCV000419419 RCV000438184 RCV000427501 rs121913399 RCV000426895 RCV000427907 RCV000444074 RCV000420040 RCV000430713 CA16602685 RCV000418083 COSM5684 |
34 | G>R | Malignant neoplasm of body of uterus Adrenal cortex carcinoma Hepatocellular carcinoma Lung adenocarcinoma Gastric adenocarcinoma Squamous cell carcinoma of the head and neck Medulloblastoma Malignant melanoma of skin pituitary Medulloblastoma (mdb) NS liver central_nervous_system endometrium skin bone stomach testis lung ovary Pilomatrixoma pancreas large_intestine Variant assessed as Somatic; impact. soft_tissue Craniopharyngioma hepatocellular carcinoma [ClinVar, Cosmic, Ensembl, NCI-TCGA, UniProt] | Yes |
ClinGen cosmic curated ClinVar Ensembl NCI-TCGA dbSNP UniProt |
|
RCV000417805 RCV000429363 CA127273 VAR_017622 COSM5670 RCV000427137 RCV000437867 RCV000149120 RCV000418024 RCV000435058 RCV000425225 RCV000428985 RCV000436574 RCV000019146 RCV000418475 rs28931589 |
34 | G>V | Malignant neoplasm of body of uterus Medulloblastoma (mdb) Adrenal cortex carcinoma central_nervous_system skin Hepatocellular carcinoma stomach Lung adenocarcinoma pancreas Variant assessed as Somatic; impact. Craniopharyngioma Hepatoblastoma pituitary biliary_tract liver Melanoma endometrium bone Gastric adenocarcinoma lung Squamous cell carcinoma of the head and neck ovary Malignant tumor of prostate Medulloblastoma large_intestine prostate breast Malignant melanoma of skin hepatoblastoma [ClinVar, Ensembl, Cosmic, NCI-TCGA, UniProt] | Yes |
ClinGen cosmic curated ClinVar UniProt ExAC NCI-TCGA dbSNP gnomAD |
|
RCV000430984 RCV000435831 RCV000436705 RCV000435198 COSM5675 RCV000419464 RCV000430355 rs121913228 RCV000419658 RCV000424491 RCV000444358 CA16602688 RCV000426018 |
37 | S>A | Malignant neoplasm of body of uterus Medulloblastoma (mdb) Carcinoma of esophagus liver Neoplasm of uterine cervix central_nervous_system endometrium Hepatocellular carcinoma stomach Gastric adenocarcinoma parathyroid Lung adenocarcinoma small_intestine Prostate adenocarcinoma ovary Medulloblastoma large_intestine Variant assessed as Somatic; impact. Neoplasm of the parathyroid gland soft_tissue prostate [ClinVar, Ensembl, Cosmic, NCI-TCGA] | Yes |
ClinGen cosmic curated ClinVar Ensembl NCI-TCGA dbSNP |
|
VAR_017625 RCV000423597 RCV000431366 RCV000441696 RCV000030945 RCV000430788 RCV000445258 RCV000432924 RCV000019141 RCV000421574 RCV000438791 RCV000422240 rs121913403 RCV000087195 CA127267 COSM5679 |
37 | S>C | Malignant neoplasm of body of uterus Medulloblastoma (mdb) Neoplasm of uterine cervix central_nervous_system skin Hepatocellular carcinoma stomach Lung adenocarcinoma pancreas Variant assessed as Somatic; impact. pituitary Carcinoma of esophagus biliary_tract liver adrenal_gland urinary_tract endometrium bone Gastric adenocarcinoma Prostate adenocarcinoma lung ovary Pilomatrixoma Medulloblastoma large_intestine Neoplasm of ovary PTR, hepatoblastoma and ovarian cancer [ClinVar, Ensembl, Cosmic, NCI-TCGA, UniProt] | Yes |
ClinGen cosmic curated ClinVar UniProt Ensembl NCI-TCGA dbSNP |
|
RCV000428583 RCV000425340 RCV000420061 RCV000445320 VAR_017626 RCV000436738 rs121913403 COSM5662 RCV002464070 CA127279 RCV000444520 RCV000437726 RCV000427490 RCV000433883 RCV000426489 RCV000442576 RCV000019151 |
37 | S>F | Malignant neoplasm of body of uterus Medulloblastoma (mdb) Lung cancer Neoplasm of uterine cervix skin central_nervous_system Hepatocellular carcinoma stomach testis Lung adenocarcinoma pancreas Variant assessed as Somatic; impact. soft_tissue pituitary cervix Carcinoma of esophagus biliary_tract liver Melanoma endometrium urinary_tract Gastric adenocarcinoma Prostate adenocarcinoma lung ovary thyroid Pilomatrixoma oesophagus Medulloblastoma large_intestine Neoplasm of ovary PTR [ClinVar, Ensembl, Cosmic, NCI-TCGA, UniProt] | Yes |
ClinGen cosmic curated ClinVar UniProt Ensembl NCI-TCGA dbSNP |
|
COSM5687 RCV000431861 RCV000434676 RCV000423953 RCV000440535 RCV000443827 CA16602687 RCV000429643 RCV000440333 RCV000444541 RCV000423766 rs121913228 RCV000423296 |
37 | S>P | pituitary Malignant neoplasm of body of uterus Medulloblastoma (mdb) Carcinoma of esophagus liver Neoplasm of uterine cervix Neoplasm of stomach endometrium central_nervous_system skin Hepatocellular carcinoma stomach Gastric adenocarcinoma Lung adenocarcinoma Prostate adenocarcinoma pancreas Medulloblastoma large_intestine Variant assessed as Somatic; impact. [Cosmic, ClinVar, Ensembl, NCI-TCGA] | Yes |
ClinGen cosmic curated ClinVar Ensembl NCI-TCGA dbSNP |
|
CA16602377 RCV000420492 RCV000430785 RCV000431858 RCV000441660 rs121913403 RCV000419361 COSM5666 RCV000432982 RCV000441059 RCV000438660 RCV000421620 RCV000429634 VAR_017627 RCV000420998 |
37 | S>Y | Malignant neoplasm of body of uterus Medulloblastoma (mdb) Carcinoma of esophagus liver Neoplasm of uterine cervix Neoplasm of stomach Melanoma skin central_nervous_system endometrium Hepatocellular carcinoma stomach Gastric adenocarcinoma Lung adenocarcinoma Prostate adenocarcinoma ovary pancreas Medulloblastoma Variant assessed as Somatic; impact. soft_tissue breast hepatocellular carcinoma [ClinVar, Ensembl, Cosmic, NCI-TCGA, UniProt] | Yes |
ClinGen cosmic curated ClinVar UniProt Ensembl NCI-TCGA dbSNP |
|
RCV000433725 COSM5693 rs1057519836 CA16602690 |
40 | T>A | liver large_intestine Neoplasm of stomach [Cosmic, ClinVar] | Yes |
ClinGen cosmic curated ClinVar Ensembl dbSNP |
|
CA16602693 COSM5708 RCV000436951 rs1057519837 |
40 | T>I | thyroid Melanoma endometrium soft_tissue bone [Cosmic, ClinVar] | Yes |
ClinGen cosmic curated ClinVar Ensembl dbSNP |
|
CA16602689 RCV000425513 rs1057519836 |
40 | T>P | Neoplasm [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
rs1057519837 COSM29396 RCV000426279 CA16602692 |
40 | T>S | Neoplasm central_nervous_system [ClinVar, Cosmic] | Yes |
ClinGen cosmic curated ClinVar Ensembl dbSNP |
|
CA16602691 COSM29396 rs1057519836 RCV000444185 |
40 | T>S | Neoplasm central_nervous_system [ClinVar, Cosmic] | Yes |
ClinGen cosmic curated ClinVar Ensembl dbSNP |
|
RCV000431914 RCV000421675 CA127269 RCV000087196 RCV000019142 rs121913412 VAR_017629 RCV000019143 RCV000421001 RCV000430146 RCV000432978 RCV000419429 RCV000438649 COSM5664 RCV000440817 |
41 | T>A | Malignant neoplasm of body of uterus Adrenal cortex carcinoma upper_aerodigestive_tract central_nervous_system skin Hepatocellular carcinoma stomach Lung adenocarcinoma small_intestine kidney pancreas Variant assessed as Somatic; impact. Pancreatic adenocarcinoma soft_tissue Neoplasm of the large intestine haematopoietic_and_lymphoid_tissue Hepatoblastoma pituitary biliary_tract liver adrenal_gland endometrium urinary_tract bone Prostate adenocarcinoma lung ovary large_intestine prostate breast Desmoid tumor caused by somatic mutation Malignant melanoma of skin hepatoblastoma and hepatocellular carcinoma; also in a desmoid tumor; strongly reduces phosphorylation and degradation; abolishes phosphorylation on Ser-33 and Ser-37 and enhances transactivation of target genes [ClinVar, Cosmic, NCI-TCGA, UniProt] | Yes |
ClinGen cosmic curated ClinVar UniProt Ensembl NCI-TCGA dbSNP |
|
RCV000443038 RCV000422057 CA127281 RCV000436836 RCV000442963 RCV000432291 RCV000426659 rs121913413 RCV000442251 COSM5676 RCV000427656 RCV000019152 |
41 | T>I | pituitary Malignant neoplasm of body of uterus Adrenal cortex carcinoma biliary_tract liver skin endometrium Hepatocellular carcinoma stomach bone Lung adenocarcinoma Prostate adenocarcinoma ovary thyroid Pilomatrixoma pancreas large_intestine Variant assessed as Somatic; impact. Pancreatic adenocarcinoma prostate soft_tissue Neoplasm of the large intestine haematopoietic_and_lymphoid_tissue Malignant melanoma of skin [Cosmic, ClinVar, NCI-TCGA] | Yes |
ClinGen cosmic curated ClinVar Ensembl NCI-TCGA dbSNP |
|
RCV000435532 RCV000428037 CA16602833 RCV000430531 rs121913413 RCV000417888 COSM5730 RCV000420278 RCV000437888 RCV000422378 RCV000440036 |
41 | T>N | Malignant neoplasm of body of uterus cervix Adrenal cortex carcinoma liver skin Hepatocellular carcinoma Lung adenocarcinoma Prostate adenocarcinoma Variant assessed as Somatic; impact. Pancreatic adenocarcinoma Neoplasm of the large intestine haematopoietic_and_lymphoid_tissue Malignant melanoma of skin [ClinVar, Cosmic, NCI-TCGA] | Yes |
ClinGen cosmic curated ClinVar Ensembl NCI-TCGA dbSNP |
|
CA2330861 RCV002527229 rs769203968 RCV000503885 RCV002527230 COSM5696 |
42 | T>I | thyroid liver soft_tissue Inborn genetic diseases [Cosmic, ClinVar] | Yes |
ClinGen cosmic curated ClinVar ExAC dbSNP gnomAD |
|
rs587776850 RCV000019137 RCV000505566 |
45 | S>missing | Carcinoma of colon Nephroblastoma [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000427795 COSM5685 rs121913407 RCV000420592 CA16602694 |
45 | S>A | kidney Disease Neoplasm of brain liver large_intestine endometrium [Cosmic, ClinVar] | Yes |
ClinGen cosmic curated ClinVar Ensembl dbSNP |
|
COSM5689 RCV000439152 RCV000437569 RCV000428521 RCV000439811 rs121913409 RCV000422624 RCV000420360 RCV000428312 CA16602695 RCV000417615 RCV000432444 |
45 | S>C | Malignant neoplasm of body of uterus Adrenal cortex carcinoma Disease liver endometrium Hepatocellular carcinoma stomach Lung adenocarcinoma Prostate adenocarcinoma kidney large_intestine Variant assessed as Somatic; impact. soft_tissue Neoplasm of the large intestine Malignant melanoma of skin [ClinVar, Cosmic, NCI-TCGA] | Yes |
ClinGen cosmic curated ClinVar Ensembl NCI-TCGA dbSNP |
|
RCV000019153 RCV000422910 RCV000436327 VAR_017631 RCV000418669 RCV000429593 RCV000440570 RCV000441643 RCV001374445 rs121913409 CA127283 COSM5667 RCV000423935 RCV000429678 RCV000505673 RCV000430307 |
45 | S>F | Malignant neoplasm of body of uterus Adrenal cortex carcinoma Disease skin central_nervous_system Hepatocellular carcinoma stomach Lung adenocarcinoma kidney pancreas Variant assessed as Somatic; impact. soft_tissue Neoplasm of the large intestine haematopoietic_and_lymphoid_tissue cervix biliary_tract liver adrenal_gland Melanoma urinary_tract endometrium Prostate adenocarcinoma Gallbladder cancer lung ovary large_intestine Nephroblastoma Malignant melanoma of skin hepatocellular carcinoma [ClinVar, Cosmic, NCI-TCGA, UniProt] | Yes |
ClinGen cosmic curated ClinVar UniProt Ensembl NCI-TCGA dbSNP |
|
RCV000439398 RCV000441996 RCV000427866 RCV000087197 RCV000423471 CA127285 RCV000019154 RCV000417674 RCV000428983 RCV000439866 VAR_017632 RCV000435313 rs121913407 COSM5663 RCV000422223 |
45 | S>P | Malignant neoplasm of body of uterus Adrenal cortex carcinoma Disease skin Hepatocellular carcinoma Lung adenocarcinoma kidney pancreas Variant assessed as Somatic; impact. soft_tissue Neoplasm of the large intestine pituitary liver adrenal_gland Melanoma urinary_tract endometrium bone Prostate adenocarcinoma lung ovary thyroid large_intestine prostate Malignant melanoma of skin hepatocellular carcinoma [ClinVar, Cosmic, NCI-TCGA, UniProt] | Yes |
ClinGen cosmic curated ClinVar UniProt Ensembl NCI-TCGA dbSNP |
|
RCV000434843 RCV000435197 rs121913409 RCV000437572 RCV000444787 RCV000422850 COSM5692 CA16602378 RCV000427426 RCV000442079 RCV000424917 RCV000417587 |
45 | S>Y | pituitary Malignant neoplasm of body of uterus Adrenal cortex carcinoma liver adrenal_gland Melanoma skin endometrium Hepatocellular carcinoma Lung adenocarcinoma Prostate adenocarcinoma kidney ovary Variant assessed as Somatic; impact. soft_tissue Neoplasm of the large intestine Malignant melanoma of skin [Cosmic, ClinVar, NCI-TCGA] | Yes |
ClinGen cosmic curated ClinVar Ensembl NCI-TCGA dbSNP |
|
COSM1423027 COSM30736 RCV000361215 RCV001265460 rs886041553 CA10602900 |
66 | W>* | Severe intellectual disability-progressive spastic diplegia syndrome large_intestine haematopoietic_and_lymphoid_tissue [ClinVar, Cosmic] | Yes |
ClinGen cosmic curated ClinVar Ensembl dbSNP |
|
RCV001265237 RCV001008327 rs1575315766 |
71 | S>missing | Severe intellectual disability-progressive spastic diplegia syndrome [ClinVar] | Yes |
ClinVar dbSNP |
|
CA10586151 RCV000234865 RCV001266683 RCV000760810 rs1369821061 |
90 | R>* | Severe intellectual disability-progressive spastic diplegia syndrome Variant assessed as Somatic; impact. Inborn genetic diseases [ClinVar, NCI-TCGA] | Yes |
ClinGen ClinVar NCI-TCGA TOPMed dbSNP |
|
CA10588361 RCV000624646 RCV000256097 RCV000763110 rs775104326 RCV000415150 |
95 | R>* | Severe intellectual disability-progressive spastic diplegia syndrome Medulloblastoma Variant assessed as Somatic; impact. Inborn genetic diseases [ClinVar, NCI-TCGA] | Yes |
ClinGen ClinVar ExAC NCI-TCGA dbSNP gnomAD |
|
rs2078141730 RCV001258339 |
102 | T>* | Severe intellectual disability-progressive spastic diplegia syndrome [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000519540 CA352229068 RCV000678281 rs1553630279 |
113 | Q>* | Severe intellectual disability-progressive spastic diplegia syndrome [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
RCV000995750 rs1575316657 |
157 | T>missing | Severe intellectual disability-progressive spastic diplegia syndrome [ClinVar] | Yes |
ClinVar dbSNP |
|
rs1553630304 CA645372738 RCV000500221 |
159 | L>M | Severe intellectual disability-progressive spastic diplegia syndrome [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
rs2078151677 RCV001260752 |
185 | R>missing | Intellectual disability [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000119827 rs587777412 |
236 | G>missing | Severe intellectual disability-progressive spastic diplegia syndrome [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000505560 CA352230110 rs1553630452 COSM188059 |
257 | T>I | large_intestine Variant assessed as Somatic; impact. Nephroblastoma [Cosmic, NCI-TCGA, ClinVar] | Yes |
ClinGen cosmic curated ClinVar Ensembl NCI-TCGA dbSNP |
|
rs2078159952 RCV001265702 |
263 | L>* | Inborn genetic diseases [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000624180 CA352230169 rs1553630472 |
266 | Q>* | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
rs2078160204 RCV001267116 |
269 | A>missing | Inborn genetic diseases [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV001253425 rs2078160335 |
271 | M>missing | Severe intellectual disability-progressive spastic diplegia syndrome [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV001195546 rs2078160286 |
271 | M>missing | Severe intellectual disability-progressive spastic diplegia syndrome [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000987257 CA158232 RCV000886563 COSM5727 RCV002517580 RCV000120622 rs35288908 |
287 | N>S | large_intestine Hepatocellular carcinoma Inborn genetic diseases [Cosmic, ClinVar] | Yes |
ClinGen cosmic curated ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
rs1553630507 RCV000677414 |
289 | T>missing | Severe intellectual disability-progressive spastic diplegia syndrome [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV001260498 rs2078162003 |
306 | Y>F | Severe intellectual disability-progressive spastic diplegia syndrome [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000032860 rs376393123 CA130431 |
309 | Q>* | Severe intellectual disability-progressive spastic diplegia syndrome [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC dbSNP |
|
RCV001260749 rs2078196892 |
315 | I>missing | Intellectual disability [ClinVar] | Yes |
ClinVar dbSNP |
|
rs778624338 RCV000624466 RCV000522499 RCV001268411 RCV000987258 CA352231537 COSM480083 |
333 | Y>* | kidney Hepatocellular carcinoma Inborn genetic diseases [Cosmic, ClinVar] | Yes |
ClinVar dbSNP ClinGen cosmic curated ExAC gnomAD |
|
RCV000985149 CA10602890 RCV000300794 COSM480083 rs886041281 |
333 | Y>* | kidney Severe intellectual disability-progressive spastic diplegia syndrome [Cosmic, ClinVar] | Yes |
ClinGen cosmic curated ClinVar Ensembl dbSNP |
|
RCV001169957 rs1454068577 |
338 | W>* | Severe intellectual disability-progressive spastic diplegia syndrome [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000735215 rs1559470315 |
339 | T>I | Severe intellectual disability-progressive spastic diplegia syndrome [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000987259 rs1575320216 |
349 | V>missing | Hepatocellular carcinoma [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV001095731 rs2078356915 |
373 | P>missing | CTNNB1-related syndromic intellectual disability [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000623772 RCV001283821 CA352232153 rs1553631770 |
380 | N>I | Exudative vitreoretinopathy 7 Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
rs1553631783 RCV000623816 |
387 | N>missing | Inborn genetic diseases [ClinVar] | Yes |
ClinVar dbSNP |
|
VAR_072282 rs1559474140 RCV000679959 CA352232278 |
388 | L>P | Severe intellectual disability-progressive spastic diplegia syndrome NEDSDV [ClinVar, UniProt] | Yes |
ClinGen ClinVar Ensembl dbSNP UniProt |
|
CA279021 RCV000199502 rs863224864 |
424 | L>R | Severe intellectual disability-progressive spastic diplegia syndrome [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
RCV000032858 rs398122907 |
425 | S>missing | Severe intellectual disability-progressive spastic diplegia syndrome [ClinVar] | Yes |
ClinVar dbSNP |
|
rs2078362331 RCV001253306 |
432 | Y>* | Colorectal cancer [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000678968 CA352232913 rs1559474364 |
433 | K>* | Severe intellectual disability-progressive spastic diplegia syndrome [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
CA352233254 RCV000505598 rs1553631848 |
458 | E>D | Papillary renal cell carcinoma type 1 [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
rs2078364837 RCV001252213 |
470 | H>Y | Intellectual disability [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000677408 RCV001092247 RCV002286777 rs1553631860 RCV003126902 CA352233471 RCV001260750 RCV001374918 |
474 | R>* | Severe intellectual disability-progressive spastic diplegia syndrome Intellectual disability Variant assessed as Somatic; impact. Microcephalic primordial dwarfism, Alazami type Developmental disorder Neurodevelopmental disorder [ClinVar, NCI-TCGA] | Yes |
ClinGen ClinVar Ensembl NCI-TCGA dbSNP |
|
RCV000495846 RCV000416683 rs1057519379 |
479 | E>missing | Severe intellectual disability-progressive spastic diplegia syndrome Exudative vitreoretinopathy 1 [ClinVar] | Yes |
ClinVar dbSNP |
|
rs1553631896 RCV000987260 RCV000627529 |
499 | H>missing | Hepatocellular carcinoma [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000987261 rs1575330336 |
511 | V>missing | Hepatocellular carcinoma [ClinVar] | Yes |
ClinVar dbSNP |
|
rs397514554 RCV002496492 RCV000255163 CA130428 RCV000032859 |
515 | R>* | Severe intellectual disability-progressive spastic diplegia syndrome Medulloblastoma [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
rs2078377820 RCV001265877 |
526 | P>missing | Inborn genetic diseases [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000735236 CA352234198 rs1559474966 |
530 | Q>* | Severe intellectual disability-progressive spastic diplegia syndrome [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
RCV000984346 rs886039332 CA10588362 RCV001260751 RCV001335878 RCV000255131 RCV000495849 |
535 | R>* | Exudative vitreoretinopathy 7 Severe intellectual disability-progressive spastic diplegia syndrome Intellectual disability Variant assessed as Somatic; impact. Abnormal lung growth, pulmonary hypertension, microcephaly, and spasticity [ClinVar, NCI-TCGA] | Yes |
ClinGen ClinVar Ensembl NCI-TCGA dbSNP |
|
rs1131692181 CA352234498 RCV000495837 |
558 | Q>* | Severe intellectual disability-progressive spastic diplegia syndrome [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
| VAR_079199 | 558 | Q>del | NEDSDV; the patient also manifest features of exudative vitreoretinopathy [UniProt] | Yes | UniProt |
|
CA204652 rs797044875 RCV002470806 RCV001852533 RCV000190686 |
575 | G>R | Severe intellectual disability-progressive spastic diplegia syndrome Variant assessed as Somatic; impact. Inborn genetic diseases [ClinVar, NCI-TCGA] | Yes |
ClinGen ClinVar Ensembl NCI-TCGA dbSNP |
|
RCV000623506 rs1553632262 |
582 | R>missing | Inborn genetic diseases [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000486133 rs1064796453 CA16617967 RCV001253207 RCV000624883 |
587 | R>* | Severe intellectual disability-progressive spastic diplegia syndrome Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP |
|
rs1575333081 RCV000851507 |
590 | I>missing | Intellectual disability [ClinVar] | Yes |
ClinVar dbSNP |
|
rs2078435023 RCV001330863 |
610 | I>missing | Exudative vitreoretinopathy 7 [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000624574 rs1553632352 |
617 | V>missing | Inborn genetic diseases [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV001267063 rs2078435846 |
624 | D>missing | Inborn genetic diseases [ClinVar] | Yes |
ClinVar dbSNP |
|
rs1553632357 CA352236244 RCV000626747 |
626 | E>* | Imperforate anus [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
rs1575334103 CA352236297 RCV000995751 |
634 | E>* | Severe intellectual disability-progressive spastic diplegia syndrome [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
rs1553632361 RCV000598918 RCV000624274 RCV001265236 |
642 | E>missing | Severe intellectual disability-progressive spastic diplegia syndrome Inborn genetic diseases [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV003147435 rs750402920 CA10602905 RCV000329795 |
654 | Y>* | Severe intellectual disability-progressive spastic diplegia syndrome [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
RCV000494679 rs748294403 CA352236480 RCV000851495 RCV002463684 |
661 | R>* | Severe intellectual disability-progressive spastic diplegia syndrome Global developmental delay [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP |
|
RCV000681631 rs1559477241 CA352236811 |
692 | E>D | Severe intellectual disability-progressive spastic diplegia syndrome [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
rs2078481368 RCV001330864 |
700 | I>T | Severe intellectual disability-progressive spastic diplegia syndrome [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000416748 rs748653573 RCV001853378 CA16044151 RCV000495850 VAR_079200 |
710 | R>C | Exudative vitreoretinopathy 7 Exudative vitreoretinopathy 1 EVR7; unknown pathological significance [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt TOPMed dbSNP gnomAD |
|
rs1057519380 RCV000495836 CA16044152 RCV000416893 |
720 | H>* | Exudative vitreoretinopathy 7 Exudative vitreoretinopathy 1 [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
rs1575339920 RCV000824816 |
758 | H>missing | Severe intellectual disability-progressive spastic diplegia syndrome [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV002540205 CA2331327 rs138501547 RCV000900930 |
772 | N>S | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
rs1310497035 CA352227918 |
2 | A>G | No |
ClinGen TOPMed gnomAD |
|
|
CA352227914 rs1204596334 |
2 | A>T | No |
ClinGen TOPMed |
|
|
CA2330839 rs749331498 |
3 | T>N | No |
ClinGen ExAC gnomAD |
|
|
CA352227930 rs1575314399 |
4 | Q>P | No |
ClinGen Ensembl |
|
|
rs1448779783 CA352227952 |
5 | A>G | No |
ClinGen TOPMed |
|
| TCGA novel | 6 | D>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs752642845 RCV000513017 CA2330855 |
14 | M>V | No |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
|
rs587778221 RCV000120620 CA158228 |
15 | E>D | No |
ClinGen ClinVar Ensembl dbSNP |
|
|
rs1453594408 CA352228033 |
16 | P>R | No |
ClinGen gnomAD |
|
|
CA352228029 rs1290293308 |
16 | P>T | No |
ClinGen gnomAD |
|
|
CA2330856 rs757325337 COSM5702 |
20 | A>V | thyroid large_intestine [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA2330857 rs77064436 COSM238574 |
22 | V>G | prostate [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
COSM5714 VAR_017612 CA352228072 rs1413975856 |
23 | S>R | liver hepatocellular carcinoma; no effect [Cosmic, UniProt] | No |
ClinGen cosmic curated UniProt TOPMed dbSNP |
| VAR_017613 | 25 | W>del | hepatocellular carcinoma [UniProt] | No | UniProt |
|
rs1159520578 CA352228467 |
26 | Q>H | No |
ClinGen TOPMed |
|
|
CA352228476 rs369714835 |
27 | Q>H | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA352228484 rs1258632801 |
28 | Q>H | No |
ClinGen gnomAD |
|
| TCGA novel | 30 | Y>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 30 | Y>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 32 | D>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| VAR_017618 | 33 | S>L | hepatocellular carcinoma [UniProt] | No | UniProt |
| VAR_017623 | 35 | I>S | hepatocellular carcinoma [UniProt] | No | UniProt |
| VAR_017628 | 37 | S>W | hepatocellular carcinoma [UniProt] | No | UniProt |
| TCGA novel | 39 | A>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs121913412 CA74088775 COSM5688 |
41 | T>P | salivary_gland kidney liver large_intestine [Cosmic] | No |
ClinGen cosmic curated Ensembl |
|
rs121913412 COSM5701 CA74088767 COSM5716 |
41 | T>S | pituitary thyroid endometrium haematopoietic_and_lymphoid_tissue [Cosmic] | No |
ClinGen cosmic curated Ensembl |
| TCGA novel | 41 | T>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 42 | T>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
COSM5745 CA74088782 rs980491821 |
42 | T>A | soft_tissue [Cosmic] | No |
ClinGen cosmic curated Ensembl |
| rs587776850 | 45 | S>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 45 | S>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| VAR_055430 | 45 | S>del | colorectal cancer [UniProt] | No | UniProt |
|
COSM30735 rs1171472831 CA352228591 |
51 | N>S | large_intestine haematopoietic_and_lymphoid_tissue [Cosmic] | No |
ClinGen cosmic curated gnomAD |
|
CA74088798 COSM5698 rs1031199273 |
52 | P>L | thyroid [Cosmic] | No |
ClinGen cosmic curated TOPMed gnomAD |
|
rs1408694980 CA352228629 |
56 | D>A | No |
ClinGen TOPMed gnomAD |
|
|
rs772550053 CA2330865 |
58 | D>G | No |
ClinGen ExAC gnomAD |
|
|
CA352228646 rs1575315698 |
59 | T>A | No |
ClinGen Ensembl |
|
|
rs1330746638 CA352228680 |
64 | Y>C | No |
ClinGen TOPMed |
|
|
CA352228714 rs1353105537 COSM5736 |
67 | E>K | soft_tissue [Cosmic] | No |
ClinGen cosmic curated gnomAD |
|
rs1269197442 CA352228829 |
79 | V>I | No |
ClinGen TOPMed |
|
|
RCV001092245 rs2078134803 |
80 | A>P | No |
ClinVar dbSNP |
|
| TCGA novel | 80 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA352228861 rs773781329 |
82 | I>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA352228865 rs1283770769 |
82 | I>M | No |
ClinGen TOPMed gnomAD |
|
|
rs748781625 CA2330890 |
82 | I>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
COSM498637 rs773781329 CA2330889 |
82 | I>V | large_intestine [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
rs770494663 CA2330891 |
85 | Q>P | No |
ClinGen ExAC gnomAD |
|
|
rs1223771101 CA352228891 |
86 | Y>C | No |
ClinGen gnomAD |
|
|
rs1295048026 CA352228900 |
87 | A>V | No |
ClinGen TOPMed |
|
|
rs773961563 CA2330892 |
88 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs2078141257 RCV001268539 |
92 | Q>* | No |
ClinVar dbSNP |
|
|
CA352228945 rs1575316298 |
94 | V>G | No |
ClinGen Ensembl |
|
|
rs1158895192 CA352228947 |
95 | R>Q | No |
ClinGen gnomAD |
|
|
RCV000493681 rs1131691736 |
96 | A>missing | No |
ClinVar dbSNP |
|
|
CA352228963 rs760527240 |
98 | M>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2330896 rs760527240 |
98 | M>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
| TCGA novel | 101 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2330898 rs753874922 |
104 | D>E | No |
ClinGen ExAC gnomAD |
|
|
rs763882677 CA2330897 |
104 | D>N | No |
ClinGen ExAC gnomAD |
|
|
rs746139399 CA352229023 |
106 | G>D | No |
ClinGen TOPMed |
|
|
rs746139399 CA74088961 |
106 | G>V | No |
ClinGen TOPMed |
|
|
rs1373151037 CA352229029 |
107 | M>R | No |
ClinGen TOPMed |
|
| TCGA novel | 107 | M>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1575316358 CA352229043 |
109 | I>F | No |
ClinGen Ensembl |
|
|
CA352229085 rs1337182887 |
115 | D>A | No |
ClinGen Ensembl |
|
|
rs1350450456 CA352229084 |
115 | D>Y | No |
ClinGen gnomAD |
|
|
rs770107882 CA74088965 |
116 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
rs758551763 CA2330899 CA2330900 |
123 | Q>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC TOPMed gnomAD NCI-TCGA |
|
CA2330901 rs751808983 |
124 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA2330902 rs755204384 |
124 | R>H | No |
ClinGen ExAC gnomAD |
|
|
CA74088976 rs751808983 |
124 | R>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2330904 rs752945251 |
127 | E>D | No |
ClinGen ExAC |
|
|
CA74088991 rs202217100 |
128 | P>S | No |
ClinGen ExAC |
|
|
CA2330905 rs202217100 |
128 | P>T | No |
ClinGen ExAC |
|
|
rs1483026554 CA352229188 |
131 | M>I | No |
ClinGen TOPMed |
|
| TCGA novel | 132 | L>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA352229191 rs775491694 |
132 | L>V | No |
ClinGen gnomAD |
|
|
CA352229231 rs1468458366 |
138 | N>D | No |
ClinGen gnomAD |
|
|
CA74089020 rs892322076 |
146 | A>T | No |
ClinGen Ensembl |
|
|
CA352229325 rs1267755116 |
151 | R>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs200968230 CA2330909 |
151 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA352229328 rs1231397985 |
152 | A>T | No |
ClinGen TOPMed |
|
|
rs1333019206 CA352229333 |
152 | A>V | No |
ClinGen TOPMed |
|
|
CA352229336 rs1362923686 |
153 | I>V | No |
ClinGen gnomAD |
|
|
rs1413932105 CA352229365 |
157 | T>I | No |
ClinGen gnomAD |
|
|
CA352229406 rs1349803723 |
163 | E>D | No |
ClinGen TOPMed |
|
| TCGA novel | 166 | V>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1457418133 CA352229458 |
169 | N>S | No |
ClinGen gnomAD |
|
|
rs764327430 CA2330940 |
173 | V>I | No |
ClinGen ExAC gnomAD |
|
|
CA2330941 rs754132704 |
174 | M>T | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 178 | L>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs77624106 CA74089177 |
179 | S>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
|
CA2330942 rs757629128 |
180 | K>R | No |
ClinGen ExAC gnomAD |
|
|
RCV000484374 rs1064793509 |
181 | K>missing | No |
ClinVar dbSNP |
|
|
CA352229539 rs1403906625 |
181 | K>M | No |
ClinGen TOPMed |
|
|
rs765722646 CA2330943 |
181 | K>Q | No |
ClinGen ExAC gnomAD |
|
|
rs2078151590 RCV001200160 |
185 | R>* | No |
ClinVar dbSNP |
|
|
CA74089194 rs963558956 COSM327070 |
187 | A>T | haematopoietic_and_lymphoid_tissue [Cosmic] | No |
ClinGen cosmic curated TOPMed gnomAD |
|
rs757818390 CA2330945 |
189 | M>T | No |
ClinGen ExAC gnomAD |
|
|
CA352229600 rs1172941347 |
190 | R>H | No |
ClinGen TOPMed gnomAD |
|
|
CA2330948 CA2330947 rs147382769 |
195 | V>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA74089202 rs147382769 |
195 | V>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA74089209 rs982974494 |
198 | I>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1361277045 CA352229653 COSM1044591 |
199 | V>I | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
rs139085081 CA74089212 |
200 | R>C | No |
ClinGen ESP TOPMed |
|
|
rs587778222 RCV000120621 RCV001854607 CA158230 |
202 | M>T | No |
ClinGen ClinVar TOPMed dbSNP gnomAD |
|
| TCGA novel | 203 | Q>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2330949 rs780996852 |
204 | N>S | No |
ClinGen ExAC gnomAD |
|
|
rs769777389 CA2330951 |
205 | T>I | No |
ClinGen ExAC gnomAD |
|
|
CA352229699 rs1463690576 |
206 | N>D | No |
ClinGen TOPMed |
|
|
rs975378240 CA74089229 |
207 | D>E | No |
ClinGen gnomAD |
|
|
rs1407787738 CA352229729 |
210 | T>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1208316016 CA352229736 |
211 | A>V | No |
ClinGen gnomAD |
|
|
CA2330954 rs770795614 |
212 | R>C | No |
ClinGen ExAC gnomAD |
|
|
CA2330955 rs200890083 |
212 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA gnomAD |
|
CA352229753 COSM1423037 rs1230436040 |
214 | T>A | large_intestine [Cosmic] | No |
ClinGen cosmic curated TOPMed gnomAD |
|
CA352229758 rs369771822 |
215 | A>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA2330958 rs369771822 COSM1044592 |
215 | A>T | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA2330959 rs762164590 |
215 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA352229827 rs144087793 |
225 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA gnomAD |
|
CA352229828 rs144087793 |
225 | R>L | No |
ClinGen ESP ExAC gnomAD |
|
|
CA2330960 rs144087793 |
225 | R>P | No |
ClinGen ESP ExAC gnomAD |
|
|
CA352229835 rs757499487 |
226 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA74089262 rs755834449 |
228 | L>I | No |
ClinGen Ensembl |
|
|
rs1453237622 CA352229849 |
229 | L>M | No |
ClinGen gnomAD |
|
|
CA352229857 rs1287180882 |
230 | A>D | No |
ClinGen gnomAD |
|
|
rs1393572968 CA352229871 |
232 | F>S | No |
ClinGen gnomAD |
|
|
rs758889881 CA2330962 |
237 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA74089270 rs373574509 |
240 | L>V | No |
ClinGen ESP gnomAD |
|
|
CA74089271 rs936616269 |
243 | M>T | No |
ClinGen TOPMed gnomAD |
|
|
CA2330963 rs766827521 |
245 | G>S | No |
ClinGen ExAC gnomAD |
|
|
rs1430995778 CA352230053 |
250 | S>F | No |
ClinGen TOPMed |
|
|
rs1349714845 CA352230068 |
251 | V>G | No |
ClinGen TOPMed |
|
|
rs2078159405 RCV001249376 |
256 | I>M | No |
ClinVar dbSNP |
|
|
rs1427148157 CA352230115 |
258 | T>N | No |
ClinGen TOPMed |
|
|
RCV000598599 rs1553630458 |
259 | L>missing | No |
ClinVar dbSNP |
|
|
rs1472749661 CA352230120 |
259 | L>F | No |
ClinGen TOPMed gnomAD |
|
|
RCV001312010 rs2078159857 |
263 | L>missing | No |
ClinVar dbSNP |
|
|
RCV000481334 rs1064793948 |
264 | L>missing | No |
ClinVar dbSNP |
|
|
rs1559469063 CA352230160 |
265 | H>N | No |
ClinGen Ensembl |
|
|
rs1392093769 CA352230194 |
269 | A>G | No |
ClinGen TOPMed |
|
| TCGA novel | 270 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1390494769 CA352230204 |
271 | M>L | No |
ClinGen gnomAD |
|
|
CA352230223 rs1304354105 |
273 | V>A | No |
ClinGen gnomAD |
|
|
CA352230219 rs1183899293 |
273 | V>M | No |
ClinGen gnomAD |
|
|
CA352230227 rs1323014360 |
274 | R>C | No |
ClinGen TOPMed gnomAD |
|
|
CA352230230 rs1233296947 |
274 | R>H | No |
ClinGen gnomAD |
|
|
rs762074528 CA2330977 |
277 | G>S | No |
ClinGen ExAC gnomAD |
|
|
CA16604470 rs1057520556 RCV000422243 |
281 | K>* | No |
ClinGen ClinVar Ensembl dbSNP |
|
|
rs770030043 CA2330978 |
282 | M>T | No |
ClinGen ExAC gnomAD |
|
|
CA2330981 rs766853534 |
287 | N>H | No |
ClinGen ExAC gnomAD |
|
|
CA352230328 rs1292334493 |
290 | N>D | No |
ClinGen TOPMed |
|
|
RCV001092246 rs2078161525 |
293 | F>missing | No |
ClinVar dbSNP |
|
| TCGA novel | 296 | I>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs759085197 CA2330982 |
297 | T>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1575317915 RCV001008980 |
309 | Q>missing | No |
ClinVar dbSNP |
|
|
rs376393123 CA2330984 |
309 | Q>E | No |
ClinGen ESP ExAC |
|
|
rs2078162308 RCV001268866 |
310 | E>* | No |
ClinVar dbSNP |
|
|
rs755788748 CA2330985 |
311 | S>G | No |
ClinGen ExAC gnomAD |
|
|
rs1270698911 CA352231244 |
313 | L>F | No |
ClinGen gnomAD |
|
|
rs1214328620 CA352231271 |
315 | I>V | No |
ClinGen TOPMed |
|
|
rs1426062980 CA352231284 |
316 | L>M | No |
ClinGen Ensembl |
|
|
rs1361178030 CA352231311 |
317 | A>P | No |
ClinGen gnomAD |
|
|
CA2331006 rs752184222 COSM3823849 |
318 | S>N | breast [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
rs760272296 CA2331007 |
318 | S>R | No |
ClinGen ExAC gnomAD |
|
|
rs1348918944 CA352231369 |
320 | G>E | No |
ClinGen gnomAD |
|
|
RCV000627453 rs1553630795 |
321 | P>missing | No |
ClinVar dbSNP |
|
|
CA352231402 rs1575320087 |
322 | Q>P | No |
ClinGen Ensembl |
|
|
RCV001232713 rs554998963 |
324 | L>V | No |
ClinVar dbSNP |
|
|
CA352231460 rs1319210904 |
326 | N>H | No |
ClinGen TOPMed |
|
|
CA2331009 rs753499163 |
327 | I>L | No |
ClinGen ExAC gnomAD |
|
|
RCV001171836 rs2078198486 |
328 | M>missing | No |
ClinVar dbSNP |
|
|
rs1242107231 CA352231500 |
328 | M>T | No |
ClinGen gnomAD |
|
|
CA74090242 rs1051533682 |
331 | Y>C | No |
ClinGen Ensembl |
|
|
COSM299929 rs1245266458 CA352231539 |
334 | E>K | large_intestine Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA TOPMed |
|
rs1454068577 CA352231573 |
338 | W>C | No |
ClinGen gnomAD |
|
|
CA2331013 rs758291562 |
339 | T>I | No |
ClinGen ExAC gnomAD |
|
|
RCV000338847 rs886041444 |
348 | S>missing | No |
ClinVar dbSNP |
|
|
CA352231655 rs1379671563 |
351 | S>F | No |
ClinGen TOPMed |
|
| TCGA novel | 354 | K>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs769825609 CA2331016 |
355 | P>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA74090266 rs891968045 |
357 | I>T | No |
ClinGen TOPMed gnomAD |
|
|
CA2331018 rs575671885 |
357 | I>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA352231702 rs1423528790 |
359 | E>K | No |
ClinGen TOPMed |
|
|
CA352231711 rs1233211339 |
360 | A>P | No |
ClinGen gnomAD |
|
|
CA352231986 rs1443251066 |
361 | G>V | No |
ClinGen TOPMed gnomAD |
|
|
RCV000760566 CA352232004 rs1559474040 |
364 | Q>* | No |
ClinGen ClinVar Ensembl dbSNP |
|
|
rs758207378 CA2331034 |
366 | L>S | No |
ClinGen ExAC gnomAD |
|
|
CA2331036 rs751567042 COSM1167931 |
373 | P>S | NS [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
rs1575328856 RCV001009199 |
380 | N>missing | No |
ClinVar dbSNP |
|
|
rs1064796240 RCV000478521 CA16617965 |
382 | L>P | No |
ClinGen ClinVar Ensembl dbSNP |
|
|
rs1275515249 CA352232182 |
382 | L>V | No |
ClinGen gnomAD |
|
|
rs778731804 CA352232238 |
386 | R>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
|
COSM188063 rs868651538 COSM131449 CA74093899 |
387 | N>K | kidney liver large_intestine Variant assessed as Somatic; impact. prostate [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated Ensembl NCI-TCGA |
|
CA352232351 rs1418552051 |
394 | K>E | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs751375496 CA2331054 |
396 | E>D | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA352232452 rs1405053019 |
398 | M>T | No |
ClinGen TOPMed |
|
|
rs767491256 CA2331056 COSM730869 |
402 | L>F | lung Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
rs753799399 CA2331057 |
404 | T>I | No |
ClinGen ExAC gnomAD |
|
|
rs1008276020 CA74093983 |
409 | L>M | No |
ClinGen TOPMed |
|
|
rs757415518 CA2331058 |
410 | G>S | No |
ClinGen ExAC gnomAD |
|
|
rs779273262 CA2331059 |
412 | D>V | No |
ClinGen ExAC gnomAD |
|
|
rs1360295347 CA352232637 |
413 | D>N | No |
ClinGen Ensembl |
|
|
rs1559474311 RCV000782021 |
421 | A>missing | No |
ClinVar dbSNP |
|
|
CA74093991 rs1021045139 |
421 | A>V | No |
ClinGen Ensembl |
|
|
rs747887509 CA74094001 |
424 | L>I | No |
ClinGen Ensembl |
|
|
rs1559474356 CA352232901 |
432 | Y>C | No |
ClinGen Ensembl |
|
|
rs768978318 CA2331064 |
437 | M>V | No |
ClinGen ExAC gnomAD |
|
|
CA74094048 rs936090981 |
438 | V>A | No |
ClinGen TOPMed gnomAD |
|
|
CA352233003 rs936090981 |
438 | V>G | No |
ClinGen TOPMed gnomAD |
|
|
CA2331065 rs781731106 |
440 | Q>R | No |
ClinGen ExAC gnomAD |
|
|
CA352233045 rs1299004124 |
442 | G>S | No |
ClinGen gnomAD |
|
|
CA74094071 rs1000703442 |
443 | G>C | No |
ClinGen Ensembl |
|
|
rs747602570 CA2331066 |
445 | E>Q | No |
ClinGen ExAC gnomAD |
|
|
CA2331067 rs769363745 |
447 | L>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs769363745 CA352233110 |
447 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2331068 rs772823421 |
448 | V>L | No |
ClinGen ExAC gnomAD |
|
|
rs771596917 CA74094108 COSM317204 |
449 | R>C | lung [Cosmic] | No |
ClinGen cosmic curated Ensembl |
|
COSM1423049 rs1198223590 CA352233138 |
449 | R>H | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
CA352233154 rs1447487057 |
451 | V>I | No |
ClinGen TOPMed gnomAD |
|
|
CA352233156 rs1447487057 |
451 | V>L | No |
ClinGen TOPMed gnomAD |
|
|
rs1575329479 RCV001008209 |
452 | L>missing | No |
ClinVar dbSNP |
|
|
rs1553631845 RCV000598755 |
452 | L>missing | No |
ClinVar dbSNP |
|
|
rs770598744 CA2331070 |
453 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 457 | R>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 458 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1297519016 CA352233313 |
463 | P>T | No |
ClinGen TOPMed |
|
|
rs1394698950 CA352233343 |
465 | I>V | No |
ClinGen TOPMed gnomAD |
|
|
CA352233388 rs1433004172 |
468 | L>F | No |
ClinGen gnomAD |
|
|
CA352233440 rs1386360637 |
472 | T>P | No |
ClinGen gnomAD |
|
| TCGA novel | 474 | R>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
RCV000734961 CA352233594 rs1559474557 |
482 | Q>* | No |
ClinGen ClinVar Ensembl dbSNP |
|
|
CA352233625 rs1316791736 |
484 | A>V | No |
ClinGen gnomAD |
|
|
rs113411271 CA2331076 COSM51394 |
486 | R>C | skin endometrium [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
rs750554859 RCV000998060 CA2331077 |
486 | R>H | No |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
|
rs113411271 CA352233638 |
486 | R>S | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 488 | H>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs780428505 CA2331079 |
489 | Y>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA352233771 rs1204504884 |
494 | V>A | No |
ClinGen gnomAD |
|
|
rs1009476273 CA74094192 |
499 | H>N | No |
ClinGen TOPMed |
|
|
CA2331080 rs751814202 |
502 | S>P | No |
ClinGen ExAC gnomAD |
|
|
CA74094213 rs1024575309 |
503 | H>Y | No |
ClinGen Ensembl |
|
|
rs1382258029 CA352233913 |
506 | L>P | No |
ClinGen Ensembl |
|
|
rs2078377150 RCV001092248 |
517 | L>missing | No |
ClinVar dbSNP |
|
|
rs1465536580 CA352234105 |
520 | C>S | No |
ClinGen TOPMed |
|
|
rs774271551 CA352234110 |
521 | P>A | No |
ClinGen gnomAD |
|
|
rs1305741896 CA352234113 |
521 | P>L | No |
ClinGen gnomAD |
|
|
rs774271551 CA74095151 |
521 | P>S | No |
ClinGen gnomAD |
|
|
rs764576683 CA352234117 |
522 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs764576683 COSM3408665 CA2331124 |
522 | A>T | central_nervous_system [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA2331125 rs754382114 |
523 | N>S | No |
ClinGen ExAC gnomAD |
|
|
CA352234140 rs1376864427 |
524 | H>L | No |
ClinGen TOPMed gnomAD |
|
|
CA352234142 rs1376864427 |
524 | H>R | No |
ClinGen TOPMed gnomAD |
|
|
rs973577793 CA74095169 |
525 | A>V | No |
ClinGen Ensembl |
|
|
rs1057520730 RCV000442337 CA16604594 |
527 | L>* | No |
ClinGen ClinVar Ensembl dbSNP |
|
|
CA2331126 rs756737848 |
528 | R>C | No |
ClinGen ExAC gnomAD |
|
|
rs587778220 RCV000120619 CA158226 |
533 | I>V | No |
ClinGen ClinVar Ensembl dbSNP |
|
|
rs551257843 CA2331128 |
542 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA gnomAD |
|
rs758002835 CA2331129 |
547 | T>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA352234408 rs1210247690 |
549 | R>C | No |
ClinGen gnomAD |
|
|
CA2331130 rs779588249 |
550 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA352234425 rs1187571366 |
551 | T>A | No |
ClinGen gnomAD |
|
|
CA352234447 rs1328515384 |
553 | M>T | No |
ClinGen TOPMed |
|
|
CA2331133 COSM1044601 rs199593411 |
553 | M>V | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA2331134 rs748148797 |
554 | G>C | No |
ClinGen ExAC |
|
|
rs186068630 CA74095213 |
555 | G>E | No |
ClinGen 1000Genomes |
|
|
rs1266504473 CA352234478 |
556 | T>A | No |
ClinGen TOPMed |
|
| TCGA novel | 562 | E>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2331157 rs745951696 |
563 | G>E | No |
ClinGen ExAC gnomAD |
|
|
rs772081115 CA2331158 |
564 | V>A | No |
ClinGen ExAC gnomAD |
|
|
CA352235331 rs772081115 |
564 | V>G | No |
ClinGen ExAC gnomAD |
|
|
CA2331159 rs775666001 |
565 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs760837728 CA2331160 |
565 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1436053000 CA352235424 |
569 | I>R | No |
ClinGen gnomAD |
|
|
rs1273240803 CA352235481 |
572 | G>D | No |
ClinGen gnomAD |
|
| TCGA novel | 578 | H>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1215990470 CA352235619 |
581 | A>T | No |
ClinGen gnomAD |
|
|
rs762099762 CA2331163 |
581 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs765762800 CA2331164 |
585 | H>D | No |
ClinGen ExAC gnomAD |
|
|
CA352235671 rs1220395399 |
585 | H>P | No |
ClinGen gnomAD |
|
|
CA74096153 rs763836725 |
586 | N>D | No |
ClinGen Ensembl |
|
|
rs762495207 CA2331166 |
587 | R>P | No |
ClinGen ExAC gnomAD |
|
|
CA352235714 rs1177261399 |
588 | I>L | No |
ClinGen gnomAD |
|
|
rs766038845 CA2331167 |
594 | N>S | No |
ClinGen ExAC gnomAD |
|
|
rs751139724 CA2331168 |
596 | I>V | No |
ClinGen ExAC gnomAD |
|
|
rs1410068456 CA352235867 COSM4158027 |
599 | F>L | thyroid [Cosmic] | No |
ClinGen cosmic curated gnomAD |
|
CA352235878 COSM4158027 rs1404476844 |
599 | F>L | thyroid [Cosmic] | No |
ClinGen cosmic curated gnomAD |
| TCGA novel | 602 | L>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2331187 rs759171472 |
605 | S>F | No |
ClinGen ExAC gnomAD |
|
|
CA352236006 rs1306221365 |
606 | P>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
CA352236011 rs1212384026 |
607 | I>F | No |
ClinGen gnomAD |
|
|
CA2331189 rs752328115 |
609 | N>D | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 613 | V>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA352236129 rs1168206875 |
617 | V>I | No |
ClinGen gnomAD |
|
|
CA352236175 rs1436728556 |
621 | L>F | No |
ClinGen gnomAD |
|
|
RCV000203130 CA249331 rs864309577 |
623 | Q>* | No |
ClinGen ClinVar Ensembl dbSNP |
|
|
CA352236222 rs1174315329 |
625 | K>R | No |
ClinGen gnomAD |
|
|
CA2331194 rs778834508 |
630 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs898106111 CA74096588 |
631 | I>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1304150324 CA352236329 |
639 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
| TCGA novel | 640 | L>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 642 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2331197 rs755119590 |
646 | S>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
COSM1044606 CA352236376 rs755119590 |
646 | S>F | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
CA352236378 rs1296486135 |
647 | R>G | No |
ClinGen gnomAD |
|
|
rs755534201 CA74096610 |
648 | N>S | No |
ClinGen TOPMed gnomAD |
|
|
CA74096693 rs1031583127 |
652 | A>V | No |
ClinGen gnomAD |
|
|
RCV001338886 rs2078441209 |
655 | A>E | No |
ClinVar dbSNP |
|
|
rs1575334396 RCV001008572 |
657 | A>missing | No |
ClinVar dbSNP |
|
|
CA2331215 COSM1537839 rs755029715 |
658 | V>F | lung [Cosmic] | No |
ClinGen cosmic curated ExAC |
|
rs2078441559 RCV001268736 |
659 | L>missing | No |
ClinVar dbSNP |
|
|
rs749661798 CA2331220 |
662 | M>I | No |
ClinGen ExAC |
|
|
CA2331219 rs778073244 |
662 | M>L | No |
ClinGen ExAC |
|
|
CA2331222 rs771458640 |
663 | S>C | No |
ClinGen ExAC |
|
|
rs771458640 CA2331221 |
663 | S>F | No |
ClinGen ExAC |
|
|
rs771458640 CA2331223 |
663 | S>Y | No |
ClinGen ExAC |
|
|
CA2331226 rs760245475 |
664 | E>* | No |
ClinGen ExAC |
|
|
CA2331227 rs763639110 |
664 | E>G | No |
ClinGen ExAC |
|
|
CA2331232 rs77750814 |
665 | D>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2331230 rs761565235 |
665 | D>H | No |
ClinGen ExAC gnomAD |
|
|
CA2331229 rs761565235 |
665 | D>N | No |
ClinGen ExAC gnomAD |
|
|
CA2331231 rs761565235 |
665 | D>Y | No |
ClinGen ExAC gnomAD |
|
|
CA2331235 rs756281365 |
667 | P>S | No |
ClinGen ExAC TOPMed |
|
|
rs754160678 CA2331237 |
668 | Q>R | No |
ClinGen ExAC gnomAD |
|
|
rs1188330297 CA352236585 |
673 | R>Q | No |
ClinGen TOPMed |
|
| TCGA novel | 675 | S>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2331241 rs772401455 |
681 | S>F | No |
ClinGen ExAC gnomAD |
|
|
CA352236746 rs1308481359 |
687 | P>A | No |
ClinGen gnomAD |
|
|
rs1227734411 CA352236767 |
688 | M>I | No |
ClinGen gnomAD |
|
|
VAR_018954 CA2331244 RCV000733698 rs4135384 |
688 | M>V | No |
ClinGen ClinVar UniProt ExAC TOPMed dbSNP gnomAD |
|
|
rs898060604 CA74096772 |
689 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
RCV000627341 CA352236786 rs1553632412 |
690 | W>* | No |
ClinGen ClinVar Ensembl dbSNP |
|
|
rs1575334693 CA352236794 |
691 | N>D | No |
ClinGen Ensembl |
|
|
CA2331265 rs769068251 |
694 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA2331268 rs769381974 |
698 | L>F | No |
ClinGen ExAC gnomAD |
|
|
CA352236919 rs769381974 |
698 | L>I | No |
ClinGen ExAC gnomAD |
|
|
CA2331269 rs772910638 |
700 | I>L | No |
ClinGen ExAC gnomAD |
|
|
CA352236946 rs1302131125 |
702 | A>T | No |
ClinGen gnomAD |
|
|
rs1376703203 CA352236951 |
702 | A>V | No |
ClinGen gnomAD |
|
|
CA352236956 rs1437006903 |
703 | Q>P | No |
ClinGen gnomAD |
|
|
RCV000782002 rs1559478415 |
705 | E>missing | No |
ClinVar dbSNP |
|
|
CA352236981 rs1575337349 |
705 | E>G | No |
ClinGen Ensembl |
|
|
rs762655300 CA2331270 |
705 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA352236996 rs1482609443 |
706 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
RCV001008373 rs1575337368 |
707 | L>missing | No |
ClinVar dbSNP |
|
|
rs770804258 CA2331271 |
707 | L>F | No |
ClinGen ExAC gnomAD |
|
|
rs774035744 CA2331272 |
708 | G>V | No |
ClinGen ExAC gnomAD |
|
|
COSM1044608 rs200308943 CA2331273 |
710 | R>H | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs748653573 CA74097836 |
710 | R>S | No |
ClinGen TOPMed gnomAD |
|
|
rs866190181 CA74098910 |
713 | D>E | No |
ClinGen Ensembl |
|
|
rs1260498461 CA352237251 |
714 | P>S | No |
ClinGen TOPMed |
|
|
CA2331301 rs755359135 |
715 | S>T | No |
ClinGen ExAC gnomAD |
|
|
rs1248210231 CA352237266 |
716 | Y>F | No |
ClinGen TOPMed |
|
|
rs768012106 CA2331302 |
717 | R>C | No |
ClinGen ExAC gnomAD |
|
|
rs753246841 CA2331303 |
717 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA2331304 rs756632297 |
718 | S>C | No |
ClinGen ExAC gnomAD |
|
|
CA352237286 rs1230378066 |
719 | F>L | No |
ClinGen TOPMed gnomAD |
|
|
rs777221523 CA2331305 |
720 | H>P | No |
ClinGen ExAC gnomAD |
|
|
CA2331306 rs748749625 |
724 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
CA2331307 rs756875168 |
725 | G>S | No |
ClinGen ExAC gnomAD |
|
|
CA2331309 rs745670329 |
728 | A>G | No |
ClinGen ExAC gnomAD |
|
|
RCV000192556 RCV002517067 rs797045504 CA205450 |
728 | A>P | No |
ClinGen ClinVar Ensembl dbSNP |
|
|
CA352237347 rs1411144383 |
729 | L>S | No |
ClinGen gnomAD |
|
|
COSM1202591 CA352237353 rs1471514536 |
730 | G>S | large_intestine [Cosmic] | No |
ClinGen cosmic curated gnomAD |
|
CA352237358 rs1293529882 |
731 | M>V | No |
ClinGen TOPMed |
|
|
CA352237372 rs772033082 |
732 | D>E | No |
ClinGen ExAC gnomAD |
|
|
rs1366225605 CA352237387 |
734 | M>I | No |
ClinGen TOPMed |
|
|
CA352237390 rs1405010887 |
735 | M>V | No |
ClinGen gnomAD |
|
|
rs746895877 CA2331312 |
737 | H>R | No |
ClinGen ExAC gnomAD |
|
|
COSM1186244 CA2331313 rs768746130 |
739 | M>I | lung [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA352237431 rs1438939521 |
740 | G>D | No |
ClinGen TOPMed |
|
|
rs773278783 CA2331314 |
740 | G>R | No |
ClinGen ExAC gnomAD |
|
|
CA352237434 rs1308020513 |
741 | G>S | No |
ClinGen gnomAD |
|
|
CA2331318 rs759866899 |
743 | H>Y | No |
ClinGen ExAC gnomAD |
|
|
rs1356035016 CA352237459 |
744 | P>R | No |
ClinGen gnomAD |
|
|
rs1016784041 CA74098992 |
745 | G>V | No |
ClinGen Ensembl |
|
|
rs1458355986 CA352237477 |
747 | D>V | No |
ClinGen TOPMed |
|
|
rs753089121 CA2331320 |
750 | V>A | No |
ClinGen ExAC gnomAD |
|
|
COSM3380579 rs1343763001 CA352237500 |
751 | D>N | pancreas [Cosmic] | No |
ClinGen cosmic curated gnomAD |
|
CA2331321 rs373158451 |
752 | G>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs200991012 CA2331322 |
755 | D>E | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1167738636 CA352237528 |
755 | D>G | No |
ClinGen TOPMed |
|
|
rs980453294 CA74099039 |
760 | Q>E | No |
ClinGen TOPMed |
|
|
rs1189472809 CA352237589 |
764 | D>N | No |
ClinGen gnomAD |
|
|
CA352237604 rs1237849101 |
766 | L>P | No |
ClinGen gnomAD |
|
|
CA2331324 rs756782457 |
767 | P>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA352237608 rs1180402965 |
767 | P>S | No |
ClinGen gnomAD |
|
|
CA74099044 rs377050808 |
768 | P>L | No |
ClinGen ESP |
|
|
CA352237621 rs1430541681 |
769 | G>V | No |
ClinGen gnomAD |
|
|
rs778596324 CA2331325 |
770 | D>H | No |
ClinGen ExAC gnomAD |
|
|
CA352237630 rs1221104083 |
771 | S>G | No |
ClinGen gnomAD |
|
|
CA352237633 rs1480609787 |
771 | S>T | No |
ClinGen TOPMed |
|
|
rs569666187 CA2331326 |
772 | N>D | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs779955747 CA2331328 |
773 | Q>E | No |
ClinGen ExAC gnomAD |
|
|
CA352237648 rs1340254110 |
773 | Q>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs1312540894 CA352237657 |
775 | A>S | No |
ClinGen gnomAD |
|
|
rs1302757202 CA352237660 |
775 | A>V | No |
ClinGen TOPMed |
|
| TCGA novel | 782 | L>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
9 associated diseases with P35222
[MIM: 114500]: Colorectal cancer (CRC)
A complex disease characterized by malignant lesions arising from the inner wall of the large intestine (the colon) and the rectum. Genetic alterations are often associated with progression from premalignant lesion (adenoma) to invasive adenocarcinoma. Risk factors for cancer of the colon and rectum include colon polyps, long-standing ulcerative colitis, and genetic family history. {ECO:0000269|PubMed:9065402}. Note=The gene represented in this entry may be involved in disease pathogenesis.
[MIM: 132600]: Pilomatrixoma (PTR)
Common benign skin tumor. {ECO:0000269|PubMed:10192393, ECO:0000269|PubMed:11703283, ECO:0000269|PubMed:12027456}. Note=The gene represented in this entry is involved in disease pathogenesis.
[MIM: 155255]: Medulloblastoma (MDB)
Malignant, invasive embryonal tumor of the cerebellum with a preferential manifestation in children. {ECO:0000269|PubMed:10666372, ECO:0000269|PubMed:12027456}. Note=The gene represented in this entry may be involved in disease pathogenesis.
[MIM: 167000]: Ovarian cancer (OC)
The term ovarian cancer defines malignancies originating from ovarian tissue. Although many histologic types of ovarian tumors have been described, epithelial ovarian carcinoma is the most common form. Ovarian cancers are often asymptomatic and the recognized signs and symptoms, even of late-stage disease, are vague. Consequently, most patients are diagnosed with advanced disease. {ECO:0000269|PubMed:10391090}. Note=Disease susceptibility is associated with variants affecting the gene represented in this entry.
[MIM: 156240]: Mesothelioma, malignant (MESOM)
An aggressive neoplasm of the serosal lining of the chest. It appears as broad sheets of cells, with some regions containing spindle-shaped, sarcoma-like cells and other regions showing adenomatous patterns. Pleural mesotheliomas have been linked to exposure to asbestos. {ECO:0000269|PubMed:11464291}. Note=The gene represented in this entry may be involved in disease pathogenesis.
[MIM: 615075]: Neurodevelopmental disorder with spastic diplegia and visual defects (NEDSDV)
An autosomal dominant disorder characterized by global developmental delay, severe intellectual disability with absent or very limited speech, microcephaly, spasticity, and visual abnormalities. {ECO:0000269|PubMed:23033978, ECO:0000269|PubMed:25326669, ECO:0000269|PubMed:28514307}. Note=The disease is caused by variants affecting the gene represented in this entry.
[MIM: 617572]: Vitreoretinopathy, exudative 7 (EVR7)
A form of exudative vitreoretinopathy, a disorder of the retinal vasculature characterized by an abrupt cessation of growth of peripheral capillaries, leading to an avascular peripheral retina. This may lead to compensatory retinal neovascularization, which is thought to be induced by hypoxia from the initial avascular insult. New vessels are prone to leakage and rupture causing exudates and bleeding, followed by scarring, retinal detachment and blindness. Clinical features can be highly variable, even within the same family. Patients with mild forms of the disease are asymptomatic, and their only disease related abnormality is an arc of avascular retina in the extreme temporal periphery. {ECO:0000269|PubMed:28575650}. Note=The disease is caused by variants affecting the gene represented in this entry.
Without disease ID
- A complex disease characterized by malignant lesions arising from the inner wall of the large intestine (the colon) and the rectum. Genetic alterations are often associated with progression from premalignant lesion (adenoma) to invasive adenocarcinoma. Risk factors for cancer of the colon and rectum include colon polyps, long-standing ulcerative colitis, and genetic family history. {ECO:0000269|PubMed:9065402}. Note=The gene represented in this entry may be involved in disease pathogenesis.
- Common benign skin tumor. {ECO:0000269|PubMed:10192393, ECO:0000269|PubMed:11703283, ECO:0000269|PubMed:12027456}. Note=The gene represented in this entry is involved in disease pathogenesis.
- Malignant, invasive embryonal tumor of the cerebellum with a preferential manifestation in children. {ECO:0000269|PubMed:10666372, ECO:0000269|PubMed:12027456}. Note=The gene represented in this entry may be involved in disease pathogenesis.
- The term ovarian cancer defines malignancies originating from ovarian tissue. Although many histologic types of ovarian tumors have been described, epithelial ovarian carcinoma is the most common form. Ovarian cancers are often asymptomatic and the recognized signs and symptoms, even of late-stage disease, are vague. Consequently, most patients are diagnosed with advanced disease. {ECO:0000269|PubMed:10391090}. Note=Disease susceptibility is associated with variants affecting the gene represented in this entry.
- An aggressive neoplasm of the serosal lining of the chest. It appears as broad sheets of cells, with some regions containing spindle-shaped, sarcoma-like cells and other regions showing adenomatous patterns. Pleural mesotheliomas have been linked to exposure to asbestos. {ECO:0000269|PubMed:11464291}. Note=The gene represented in this entry may be involved in disease pathogenesis.
- An autosomal dominant disorder characterized by global developmental delay, severe intellectual disability with absent or very limited speech, microcephaly, spasticity, and visual abnormalities. {ECO:0000269|PubMed:23033978, ECO:0000269|PubMed:25326669, ECO:0000269|PubMed:28514307}. Note=The disease is caused by variants affecting the gene represented in this entry.
- A form of exudative vitreoretinopathy, a disorder of the retinal vasculature characterized by an abrupt cessation of growth of peripheral capillaries, leading to an avascular peripheral retina. This may lead to compensatory retinal neovascularization, which is thought to be induced by hypoxia from the initial avascular insult. New vessels are prone to leakage and rupture causing exudates and bleeding, followed by scarring, retinal detachment and blindness. Clinical features can be highly variable, even within the same family. Patients with mild forms of the disease are asymptomatic, and their only disease related abnormality is an arc of avascular retina in the extreme temporal periphery. {ECO:0000269|PubMed:28575650}. Note=The disease is caused by variants affecting the gene represented in this entry.
3 regional properties for P35222
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| repeat | Armadillo | 141 - 390 | IPR000225-1 |
| repeat | Armadillo | 392 - 582 | IPR000225-2 |
| repeat | Armadillo | 583 - 664 | IPR000225-3 |
Functions
43 GO annotations of cellular component
| Name | Definition |
|---|---|
| adherens junction | A cell-cell junction composed of the epithelial cadherin-catenin complex. The epithelial cadherins, or E-cadherins, of each interacting cell extend through the plasma membrane into the extracellular space and bind to each other. The E-cadherins bind to catenins on the cytoplasmic side of the membrane, where the E-cadherin-catenin complex binds to cytoskeletal components and regulatory and signaling molecules. |
| apical part of cell | The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue. |
| apicolateral plasma membrane | The apical end of the lateral plasma membrane of epithelial cells. |
| basolateral plasma membrane | The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis. |
| beta-catenin destruction complex | A cytoplasmic protein complex containing glycogen synthase kinase-3-beta (GSK-3-beta), the adenomatous polyposis coli protein (APC), and the scaffolding protein axin, among others; phosphorylates beta-catenin, targets it for degradation by the proteasome. |
| beta-catenin-ICAT complex | Transcription factor complex that inhibits binding of Tcf to beta-catenin while preserving interaction of catenin with cadherin thus inhibiting transcription mediated by beta-catenin-Tcf complex. |
| beta-catenin-TCF complex | A protein complex that contains beta-catenin and a member of the T-cell factor (TCF)/lymphoid enhancer binding factor (LEF) family of transcription factors. |
| beta-catenin-TCF7L2 complex | A protein complex that contains beta-catenin and TCF7L2 (TCF4), binds to the TCF DNA motif within a promoter element, and is involved in the regulation of WNT target gene transcription. |
| bicellular tight junction | An occluding cell-cell junction that is composed of a branching network of sealing strands that completely encircles the apical end of each cell in an epithelial sheet; the outer leaflets of the two interacting plasma membranes are seen to be tightly apposed where sealing strands are present. Each sealing strand is composed of a long row of transmembrane adhesion proteins embedded in each of the two interacting plasma membranes. |
| catenin complex | Complex of peripheral cytoplasmic proteins (alpha-, beta- and gamma-catenin) that interact with the cytoplasmic region of uvomorulin/E-cadherin to connect it to the actin cytoskeleton. |
| cell cortex | The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins. |
| cell junction | A cellular component that forms a specialized region of connection between two or more cells, or between a cell and the extracellular matrix, or between two membrane-bound components of a cell, such as flagella. |
| cell periphery | The part of a cell encompassing the cell cortex, the plasma membrane, and any external encapsulating structures. |
| cell-cell junction | A cell junction that forms a connection between two or more cells of an organism; excludes direct cytoplasmic intercellular bridges, such as ring canals in insects. |
| centrosome | A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle. |
| cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
| cytosol | The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. |
| euchromatin | A dispersed and relatively uncompacted form of chromatin that is in a transcription-competent conformation. |
| extracellular exosome | A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm. |
| fascia adherens | A cell-cell junction that contains the transmembrane protein N-cadherin, which interacts with identical molecules from neighbouring cells to form a tight mechanical intercellular link; forms a large portion of the intercalated disc, the structure at which myofibrils terminate in cardiomyocytes. |
| flotillin complex | A protein complex that contains flotillin-1 and flotillin-2, and may contain associated proteins. Flotillins associate into membrane microdomains resembling caveolae. |
| focal adhesion | A cell-substrate junction that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments. In insects focal adhesion has also been referred to as hemi-adherens junction (HAJ). |
| lamellipodium | A thin sheetlike process extended by the leading edge of a migrating cell or extending cell process; contains a dense meshwork of actin filaments. |
| lateral plasma membrane | The portion of the plasma membrane at the lateral side of the cell. In epithelial cells, lateral plasma membranes are on the sides of cells which lie at the interface of adjacent cells. |
| membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
| microvillus membrane | The portion of the plasma membrane surrounding a microvillus. |
| nucleoplasm | That part of the nuclear content other than the chromosomes or the nucleolus. |
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
| perinuclear region of cytoplasm | Cytoplasm situated near, or occurring around, the nucleus. |
| plasma membrane | The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. |
| postsynaptic density, intracellular component | A network of proteins adjacent to the postsynaptic membrane forming an electron dense disc. Its major components include neurotransmitter receptors and the proteins that spatially and functionally organize neurotransmitter receptors in the adjacent membrane, such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components. |
| postsynaptic membrane | A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters cross the synaptic cleft and transmit the signal to the postsynaptic membrane. |
| presynaptic active zone cytoplasmic component | A specialized region below the presynaptic membrane, characterized by electron-dense material, a specialized cytoskeletal matrix and accumulated (associated) synaptic vesicles. |
| presynaptic membrane | A specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction; many synaptic junctions exhibit structural presynaptic characteristics, such as conical, electron-dense internal protrusions, that distinguish it from the remainder of the axon plasma membrane. |
| protein-containing complex | A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together. |
| protein-DNA complex | A macromolecular complex containing both protein and DNA molecules. |
| Schaffer collateral - CA1 synapse | A synapse between the Schaffer collateral axon of a CA3 pyramidal cell and a CA1 pyramidal cell. |
| Scrib-APC-beta-catenin complex | A protein complex that contains the Scribble protein (a cell polarity determinant), the tumor suppressor protein adenomatous polyposis coli (APC), and beta-catenin; may be involved in the control of cell proliferation. |
| spindle pole | Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules. |
| synapse | The junction between an axon of one neuron and a dendrite of another neuron, a muscle fiber or a glial cell. As the axon approaches the synapse it enlarges into a specialized structure, the presynaptic terminal bouton, which contains mitochondria and synaptic vesicles. At the tip of the terminal bouton is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic terminal bouton secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane. |
| transcription regulator complex | A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription. |
| Wnt signalosome | A multiprotein protein complex containing membrane-localized Wnt receptors and cytosolic protein complexes, which is capable of transmitting the Wnt signal. Contains at least a Wnt protein, LRP5 or LRP6, a member of the Frizzled (Fz) family, Axin and and a Dishevelled (DVL) protein. |
| Z disc | Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached. |
20 GO annotations of molecular function
| Name | Definition |
|---|---|
| alpha-catenin binding | Binding to catenin complex alpha subunit. |
| beta-catenin binding | Binding to a catenin beta subunit. |
| cadherin binding | Binding to cadherin, a type I membrane protein involved in cell adhesion. |
| chromatin binding | Binding to chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. |
| disordered domain specific binding | Binding to a disordered domain of a protein. |
| DNA-binding transcription factor binding | Binding to a DNA-binding transcription factor, a protein that interacts with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. |
| enzyme binding | Binding to an enzyme, a protein with catalytic activity. |
| histone methyltransferase binding | Binding to a histone methyltransferase enzyme. |
| I-SMAD binding | Binding to an inhibitory SMAD signaling protein. |
| kinase binding | Binding to a kinase, any enzyme that catalyzes the transfer of a phosphate group. |
| nuclear estrogen receptor binding | Binding to a nuclear estrogen receptor. |
| nuclear receptor binding | Binding to a nuclear receptor protein. Nuclear receptor proteins are DNA-binding transcription factors which are regulated by binding to a ligand. |
| protein C-terminus binding | Binding to a protein C-terminus, the end of a peptide chain at which the 1-carboxyl function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue. |
| protein kinase binding | Binding to a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate. |
| protein phosphatase binding | Binding to a protein phosphatase. |
| RNA polymerase II-specific DNA-binding transcription factor binding | Binding to a sequence-specific DNA binding RNA polymerase II transcription factor, any of the factors that interact selectively and non-covalently with a specific DNA sequence in order to modulate transcription. |
| SMAD binding | Binding to a SMAD signaling protein. |
| transcription coactivator activity | A transcription coregulator activity that activates or increases the transcription of specific gene sets via binding to a DNA-bound DNA-binding transcription factor, either on its own or as part of a complex. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coactivators modifies chromatin structure through covalent modification of histones. A second class remodels the conformation of chromatin in an ATP-dependent fashion. A third class modulates interactions of DNA-bound DNA-binding transcription factors with other transcription coregulators. A fourth class of coactivator activity is the bridging of a DNA-binding transcription factor to the general (basal) transcription machinery. The Mediator complex, which bridges sequence-specific DNA binding transcription factors and RNA polymerase, is also a transcription coactivator. |
| transcription coregulator binding | Binding to a transcription coregulator, a protein involved in regulation of transcription via protein-protein interactions with transcription factors and other transcription regulatory proteins. Cofactors do not bind DNA directly, but rather mediate protein-protein interactions between regulatory transcription factors and the basal transcription machinery. |
| transmembrane transporter binding | Binding to a transmembrane transporter, a protein or protein complex that enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
157 GO annotations of biological process
| Name | Definition |
|---|---|
| acinar cell differentiation | The epithelial cell differentiation process in which a relatively unspecialized cell acquires specialized features of an acinar cell, a secretory cell that is grouped together with other cells of the same type to form grape-shaped clusters known as acini. |
| adherens junction assembly | The aggregation, arrangement and bonding together of a set of components to form an adherens junction. An adherens junction is a cell-cell junction composed of the epithelial cadherin-catenin complex at which the cytoplasmic face of the plasma membrane is attached to actin filaments. |
| anterior/posterior axis specification | The establishment, maintenance and elaboration of the anterior/posterior axis. The anterior-posterior axis is defined by a line that runs from the head or mouth of an organism to the tail or opposite end of the organism. |
| apoptotic signaling pathway | The series of molecular signals which triggers the apoptotic death of a cell. The pathway starts with reception of a signal, and ends when the execution phase of apoptosis is triggered. |
| astrocyte-dopaminergic neuron signaling | Cell-cell signaling that mediates the transfer of information from an astrocyte to a dopaminergic neuron. |
| bone resorption | The process in which specialized cells known as osteoclasts degrade the organic and inorganic portions of bone, and endocytose and transport the degradation products. |
| branching involved in blood vessel morphogenesis | The process of coordinated growth and sprouting of blood vessels giving rise to the organized vascular system. |
| branching involved in ureteric bud morphogenesis | The process in which the branching structure of the ureteric bud is generated and organized. The ureteric bud is an epithelial tube that grows out from the metanephric duct. The bud elongates and branches to give rise to the ureter and kidney collecting tubules. |
| canonical Wnt signaling pathway | The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes. In this pathway, the activated receptor signals via downstream effectors that result in the inhibition of beta-catenin phosphorylation, thereby preventing degradation of beta-catenin. Stabilized beta-catenin can then accumulate and travel to the nucleus to trigger changes in transcription of target genes. |
| canonical Wnt signaling pathway involved in mesenchymal stem cell differentiation | The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes involved in mesenchymal stem cell differentiation. |
| canonical Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation | Any canonical Wnt signaling pathway that is involved in midbrain dopaminergic neuron differentiation. |
| canonical Wnt signaling pathway involved in negative regulation of apoptotic process | The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes involved in the negative regulation of apoptotic process. |
| canonical Wnt signaling pathway involved in osteoblast differentiation | The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes involved in osteoblast differentiation. |
| canonical Wnt signaling pathway involved in positive regulation of cardiac outflow tract cell proliferation | The canonical Wnt signaling pathway that contributes to the modulation of the expansion of a population of cardiac outflow tract cells. |
| canonical Wnt signaling pathway involved in positive regulation of epithelial to mesenchymal transition | The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes involved in the positive regulation of epithelial cell to mesenchymal cell transition. |
| cell adhesion | The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules. |
| cell fate specification | The process involved in the specification of cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment. |
| cell maturation | A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state. |
| cell morphogenesis involved in differentiation | The change in form (cell shape and size) that occurs when relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. |
| cell-cell adhesion | The attachment of one cell to another cell via adhesion molecules. |
| cell-matrix adhesion | The binding of a cell to the extracellular matrix via adhesion molecules. |
| cellular response to growth factor stimulus | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a growth factor stimulus. |
| cellular response to indole-3-methanol | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an indole-3-methanol stimulus. |
| central nervous system vasculogenesis | The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes in the central nervous system. The capillary endothelial cells in the brain are specialized to form the blood-brain barrier. |
| chemical synaptic transmission | The vesicular release of classical neurotransmitter molecules from a presynapse, across a chemical synapse, the subsequent activation of neurotransmitter receptors at the postsynapse of a target cell (neuron, muscle, or secretory cell) and the effects of this activation on the postsynaptic membrane potential and ionic composition of the postsynaptic cytosol. This process encompasses both spontaneous and evoked release of neurotransmitter and all parts of synaptic vesicle exocytosis. Evoked transmission starts with the arrival of an action potential at the presynapse. |
| chondrocyte differentiation | The process in which a chondroblast acquires specialized structural and/or functional features of a chondrocyte. A chondrocyte is a polymorphic cell that forms cartilage. |
| cranial ganglion development | The process whose specific outcome is the progression of a cranial ganglion over time, from its formation to the mature structure. |
| cranial skeletal system development | The process whose specific outcome is the progression of a cranial skeletal system over time, from its formation to the mature structure. The cranial skeletal system is the skeletal subdivision of the head, and includes the skull (cranium plus mandible), pharyngeal and/or hyoid apparatus. |
| detection of muscle stretch | The series of events by which a muscle stretch stimulus is received by a cell and converted into a molecular signal. |
| dorsal root ganglion development | The process whose specific outcome is the progression of a dorsal root ganglion over time, from its formation to the mature structure. |
| dorsal/ventral axis specification | The establishment, maintenance and elaboration of the dorsal/ventral axis. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism. |
| ectoderm development | The process whose specific outcome is the progression of the ectoderm over time, from its formation to the mature structure. In animal embryos, the ectoderm is the outer germ layer of the embryo, formed during gastrulation. |
| embryonic axis specification | The establishment, maintenance and elaboration of a pattern along a line or a point in an embryo. |
| embryonic brain development | The process occurring during the embryonic phase whose specific outcome is the progression of the brain over time, from its formation to the mature structure. |
| embryonic digit morphogenesis | The process, occurring in the embryo, by which the anatomical structures of the digit are generated and organized. A digit is one of the terminal divisions of an appendage, such as a finger or toe. |
| embryonic foregut morphogenesis | The process in which the anatomical structures of the foregut are generated and organized, during the embryonic phase. |
| embryonic forelimb morphogenesis | The process, occurring in the embryo, by which the anatomical structures of the forelimb are generated and organized. The forelimbs are the front limbs of an animal, e.g. the arms of a human. |
| embryonic heart tube development | The process whose specific outcome is the progression of the embryonic heart tube over time, from its formation to the mature structure. The heart tube forms as the heart rudiment from the heart field. |
| embryonic hindlimb morphogenesis | The process, occurring in the embryo, by which the anatomical structures of the hindlimbs are generated and organized. The hindlimbs are the posterior limbs of an animal. |
| embryonic skeletal limb joint morphogenesis | The process, occurring in the embryo, in which the anatomical structures of a skeletal limb joint are generated and organized. A skeletal limb joint is the connecting structure between the bones of a limb. |
| endodermal cell fate commitment | The cell differentiation process that results in commitment of a cell to become part of the endoderm. |
| endothelial tube morphogenesis | The process in which the anatomical structures of a tube are generated and organized from an endothelium. Endothelium refers to the layer of cells lining blood vessels, lymphatics, the heart, and serous cavities, and is derived from bone marrow or mesoderm. Corneal endothelium is a special case, derived from neural crest cells. |
| epithelial cell differentiation involved in prostate gland development | The process in which a relatively unspecialized cell acquires specialized features of an epithelial cell of the prostate gland. |
| epithelial cell proliferation involved in prostate gland development | The multiplication or reproduction of epithelial cells, resulting in the expansion of a cell population that contributes to the progression of the prostate gland over time. |
| epithelial to mesenchymal transition | A transition where an epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell. |
| epithelial tube branching involved in lung morphogenesis | The process in which a highly ordered sequence of patterning events generates the branched epithelial tubes of the lung, consisting of reiterated combinations of bud outgrowth, elongation, and dichotomous subdivision of terminal units. |
| fibroblast growth factor receptor signaling pathway | The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands. |
| fungiform papilla formation | The developmental process pertaining to the initial formation of a spongiform papilla from unspecified parts. The fungiform papilla is a mushroom-shaped papilla of the tongue. |
| gastrulation with mouth forming second | A gastrulation process in which the initial invagination becomes the anus and the mouth forms second. |
| genitalia morphogenesis | The process in which the anatomical structures of genitalia are generated and organized. The genitalia are the organs of reproduction or generation, external and internal. |
| glial cell fate determination | The cell fate determination process in which a cell becomes capable of differentiating autonomously into a glial cell regardless of its environment; upon determination, the cell fate cannot be reversed. |
| hair cell differentiation | The process in which a relatively unspecialized cell acquires specialized features of a hair cell. |
| hair follicle morphogenesis | The process in which the anatomical structures of the hair follicle are generated and organized. |
| hair follicle placode formation | The developmental process in which a hair placode forms. An hair follicle placode is a thickening of the ectoderm that will give rise to the hair follicle bud. |
| hindbrain development | The process whose specific outcome is the progression of the hindbrain over time, from its formation to the mature structure. The hindbrain is the posterior of the three primary divisions of the developing chordate brain, or the corresponding part of the adult brain (in vertebrates, includes the cerebellum, pons, and medulla oblongata and controls the autonomic functions and equilibrium). |
| hypothalamus development | The progression of the hypothalamus region of the forebrain, from its initial formation to its mature state. |
| I-kappaB kinase/NF-kappaB signaling | The process in which a signal is passed on to downstream components within the cell through the I-kappaB-kinase (IKK)-dependent activation of NF-kappaB. The cascade begins with activation of a trimeric IKK complex (consisting of catalytic kinase subunits IKKalpha and/or IKKbeta, and the regulatory scaffold protein NEMO) and ends with the regulation of transcription of target genes by NF-kappaB. In a resting state, NF-kappaB dimers are bound to I-kappaB proteins, sequestering NF-kappaB in the cytoplasm. Phosphorylation of I-kappaB targets I-kappaB for ubiquitination and proteasomal degradation, thus releasing the NF-kappaB dimers, which can translocate to the nucleus to bind DNA and regulate transcription. |
| in utero embryonic development | The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth. An example of this process is found in Mus musculus. |
| layer formation in cerebral cortex | The detachment of cells from radial glial fibers at the appropriate time when they cease to migrate and form distinct layer in the cerebral cortex. |
| lens morphogenesis in camera-type eye | The process in which the anatomical structures of the lens are generated and organized. The lens is a transparent structure in the eye through which light is focused onto the retina. An example of this process is found in Mus musculus. |
| lung epithelial cell differentiation | The process in which a relatively unspecialized cell acquires specialized features of an epithelial cell that contributes to the epithelium of the lung. |
| lung induction | The close range interaction of two or more cells or tissues that causes the cells of the foregut to change their fates and specify the development of the lung. |
| lung-associated mesenchyme development | The biological process whose specific outcome is the progression of a lung-associated mesenchyme from an initial condition to its mature state. This process begins with the formation of lung-associated mesenchyme and ends with the mature structure. Lung-associated mesenchyme is the tissue made up of loosely connected mesenchymal cells in the lung. |
| male genitalia development | The process whose specific outcome is the progression of the male genitalia over time, from its formation to the mature structure. |
| MAPK cascade | An intracellular protein kinase cascade containing at least a MAPK, a MAPKK and a MAP3K. The cascade can also contain an additional tiers: the upstream MAP4K. The kinases in each tier phosphorylate and activate the kinase in the downstream tier to transmit a signal within a cell. |
| mesenchymal cell proliferation involved in lung development | The multiplication or reproduction of cells, resulting in the expansion of a mesenchymal cell population that contributes to the progression of the lung over time. A mesenchymal cell is a cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets. |
| mesenchymal stem cell differentiation | The process in which a relatively unspecialized cell acquires specialized features of a mesenchymal stem cell. A mesenchymal stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized mesenchymal cells. |
| metanephros morphogenesis | The process in which the anatomical structures of the metanephros are generated and organized. |
| midbrain dopaminergic neuron differentiation | The process in which a relatively unspecialized cell acquires the specialized features of a midbrain dopaminergic neuron. |
| myoblast proliferation | The multiplication or reproduction of myoblasts, resulting in the expansion of a myoblast cell population. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers. |
| negative regulation of angiogenesis | Any process that stops, prevents, or reduces the frequency, rate or extent of angiogenesis. |
| negative regulation of apoptotic process | Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process. |
| negative regulation of apoptotic signaling pathway | Any process that stops, prevents or reduces the frequency, rate or extent of apoptotic signaling pathway. |
| negative regulation of canonical Wnt signaling pathway | Any process that decreases the rate, frequency, or extent of the Wnt signaling pathway through beta-catenin, the series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes. |
| negative regulation of cell population proliferation | Any process that stops, prevents or reduces the rate or extent of cell proliferation. |
| negative regulation of chondrocyte differentiation | Any process that stops, prevents, or reduces the frequency, rate or extent of chondrocyte differentiation. |
| negative regulation of DNA-templated transcription | Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription. |
| negative regulation of gene expression | Any process that decreases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product (protein or RNA). |
| negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis | Any process that decreases the rate, frequency or extent of the transition where a mesenchymal cell establishes apical/basolateral polarity,forms intercellular adhesive junctions, synthesizes basement membrane components and becomes an epithelial cell that will contribute to the shaping of the metanephros. |
| negative regulation of mitotic cell cycle, embryonic | Any process that stops, prevents or reduces the rate or extent of progression through the embryonic mitotic cell cycle. |
| negative regulation of oligodendrocyte differentiation | Any process that stops, prevents, or reduces the frequency, rate or extent of oligodendrocyte differentiation. |
| negative regulation of osteoclast differentiation | Any process that stops, prevents, or reduces the frequency, rate or extent of osteoclast differentiation. |
| negative regulation of oxidative stress-induced neuron death | Any process that stops, prevents or reduces the frequency, rate or extent of oxidative stress-induced neuron death. |
| negative regulation of protein sumoylation | Any process that stops, prevents, or reduces the frequency, rate or extent of the addition of SUMO groups to a protein. |
| negative regulation of transcription by RNA polymerase II | Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II. |
| nephron tubule formation | The developmental process pertaining to the initial formation of a nephron tubule from unspecified parts. A nephron tubule is an epithelial tube that is part of the nephron, the functional part of the kidney. |
| neural plate development | The process whose specific outcome is the progression of the neural plate over time, from its formation to the mature structure. The neural plate is a flat, thickened layer of ectodermal cells. The underlying dorsal mesoderm signals the ectodermal cells above it to elongate into columnar neural plate cells. The neural plate subsequently develops into the neural tube, which gives rise to the central nervous system. |
| neuroblast proliferation | The expansion of a neuroblast population by cell division. A neuroblast is any cell that will divide and give rise to a neuron. |
| neuron fate determination | The process in which a cell becomes capable of differentiating autonomously into a neuron regardless of its environment; upon determination, the cell fate cannot be reversed. |
| neuron migration | The characteristic movement of an immature neuron from germinal zones to specific positions where they will reside as they mature. |
| neuron projection extension | Long distance growth of a single neuron projection involved in cellular development. A neuron projection is a prolongation or process extending from a nerve cell, e.g. an axon or dendrite. |
| odontogenesis of dentin-containing tooth | The process whose specific outcome is the progression of a dentin-containing tooth over time, from its formation to the mature structure. A dentin-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and is composed mainly of dentin, a dense calcified substance, covered by a layer of enamel. |
| oligodendrocyte differentiation | The process in which a relatively unspecialized cell acquires the specialized features of an oligodendrocyte. An oligodendrocyte is a type of glial cell involved in myelinating the axons of neurons in the central nervous system. |
| oocyte development | The process whose specific outcome is the progression of an oocyte over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell. |
| osteoclast differentiation | The process in which a relatively unspecialized monocyte acquires the specialized features of an osteoclast. An osteoclast is a specialized phagocytic cell associated with the absorption and removal of the mineralized matrix of bone tissue. |
| oviduct development | The reproductive developmental process whose specific outcome is the progression of an oviduct over time, from its formation to the mature structure. An oviduct is a tube through which an ova passes from the ovary to the uterus, or from the ovary to the outside of the organism. |
| pancreas development | The process whose specific outcome is the progression of the pancreas over time, from its formation to the mature structure. The pancreas is an endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes. |
| positive regulation of apoptotic process | Any process that activates or increases the frequency, rate or extent of cell death by apoptotic process. |
| positive regulation of branching involved in lung morphogenesis | Any process that increases the rate, frequency, or extent of the process in which a highly ordered sequence of patterning events generates the branched structures of the lung, consisting of reiterated combinations of bud outgrowth, elongation, and dichotomous subdivision of terminal units. |
| positive regulation of cell differentiation | Any process that activates or increases the frequency, rate or extent of cell differentiation. |
| positive regulation of core promoter binding | Any process that activates or increases the frequency, rate or extent of core promoter binding. |
| positive regulation of determination of dorsal identity | Any process that activates or increases the frequency, rate or extent of determination of dorsal identity. |
| positive regulation of DNA-binding transcription factor activity | Any process that activates or increases the frequency, rate or extent of activity of a transcription factor, any factor involved in the initiation or regulation of transcription. |
| positive regulation of DNA-templated transcription | Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription. |
| positive regulation of endothelial cell differentiation | Any process that activates or increases the frequency, rate or extent of endothelial cell differentiation. |
| positive regulation of epithelial cell proliferation involved in prostate gland development | Any process that increases the rate, frequency or extent of epithelial cell proliferation that contributes to the progression of the prostate gland over time. |
| positive regulation of epithelial to mesenchymal transition | Any process that increases the rate, frequency, or extent of epithelial to mesenchymal transition. Epithelial to mesenchymal transition is where an epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell. |
| positive regulation of fibroblast growth factor receptor signaling pathway | Any process that activates or increases the frequency, rate or extent of fibroblast growth factor receptor signaling pathway activity. |
| positive regulation of gene expression | Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product (protein or RNA). |
| positive regulation of heparan sulfate proteoglycan biosynthetic process | Any process that increases the rate, frequency or extent of heparan sulfate proteoglycan biosynthesis. Heparan sulfate proteoglycan biosynthetic processes are the chemical reactions and pathways resulting in the formation of the heparan sulfate proteoglycan, a glycosaminoglycan with repeat unit consisting of alternating alpha-(1->4)-linked hexuronic acid and glucosamine residues. |
| positive regulation of histone H3-K4 methylation | Any process that activates or increases the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 4 of histone H3. |
| positive regulation of I-kappaB kinase/NF-kappaB signaling | Any process that activates or increases the frequency, rate or extent of I-kappaB kinase/NF-kappaB signaling. |
| positive regulation of MAPK cascade | Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade. |
| positive regulation of mesenchymal cell proliferation | The process of activating or increasing the rate or extent of mesenchymal cell proliferation. Mesenchymal cells are loosely organized embryonic cells. |
| positive regulation of myoblast proliferation | Any process that activates or increases the frequency, rate or extent of myoblast proliferation. |
| positive regulation of neuroblast proliferation | Any process that activates or increases the rate of neuroblast proliferation. |
| positive regulation of neuron apoptotic process | Any process that activates or increases the frequency, rate or extent of cell death of neurons by apoptotic process. |
| positive regulation of osteoblast differentiation | Any process that activates or increases the frequency, rate or extent of osteoblast differentiation. |
| positive regulation of skeletal muscle tissue development | Any process that activates, maintains or increases the rate of skeletal muscle tissue development. |
| positive regulation of stem cell proliferation | Any process that activates or increases the frequency, rate or extent of stem cell proliferation. |
| positive regulation of telomerase activity | Any process that activates or increases the frequency, rate or extent of telomerase activity, the catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). |
| positive regulation of telomere maintenance via telomerase | Any process that activates or increases the frequency, rate or extent of the addition of telomeric repeats by telomerase. |
| positive regulation of transcription by RNA polymerase II | Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. |
| positive regulation of transcription elongation by RNA polymerase II | Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II. |
| proteasome-mediated ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. |
| protein localization to cell surface | A process in which a protein is transported to, or maintained in, a location within the external part of the cell wall and/or plasma membrane. |
| protein polyubiquitination | Addition of multiple ubiquitin groups to a protein, forming a ubiquitin chain. |
| proximal/distal pattern formation | The regionalization process in which specific areas of cell differentiation are determined along a proximal/distal axis. The proximal/distal axis is defined by a line that runs from main body (proximal end) of an organism outward (distal end). |
| regulation of angiogenesis | Any process that modulates the frequency, rate or extent of angiogenesis. |
| regulation of calcium ion import | Any process that modulates the rate, frequency, or extent of the directed movement of calcium ions into a cell or organelle. |
| regulation of centriole-centriole cohesion | Any process that modulates the extent to which the two centrioles within a centrosome remain tightly paired; may be mediated by the assembly and disassembly of a proteinaceous linker. |
| regulation of centromeric sister chromatid cohesion | Any process that modulates the frequency, rate or extent of sister chromatid cohesion in the centromeric region of a chromosome. |
| regulation of fibroblast proliferation | Any process that modulates the frequency, rate or extent of multiplication or reproduction of fibroblast cells. |
| regulation of myelination | Any process that modulates the frequency, rate or extent of the formation of a myelin sheath around nerve axons. |
| regulation of nephron tubule epithelial cell differentiation | Any process that modulates the frequency, rate or extent of nephron tubule epithelial cell differentiation. |
| regulation of neurogenesis | Any process that modulates the frequency, rate or extent of neurogenesis, the generation of cells in the nervous system. |
| regulation of protein localization to cell surface | Any process that modulates the frequency, rate or extent of protein localization to the cell surface. |
| regulation of secondary heart field cardioblast proliferation | Any process that modulates the frequency, rate or extent of cardioblast proliferation in the second heart field. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating. The secondary heart field is the region of the heart that will form the majority of the mesodermal component of the right ventricle, the arterial pole (outflow tract) and the venous pole (inflow tract). |
| regulation of smooth muscle cell proliferation | Any process that modulates the frequency, rate or extent of smooth muscle cell proliferation. |
| regulation of T cell proliferation | Any process that modulates the frequency, rate or extent of T cell proliferation. |
| regulation of timing of anagen | Any process that modulates the frequency, rate or extent of timing of anagen, the growth phase of the hair cycle. |
| renal inner medulla development | The process whose specific outcome is the progression of the renal inner medulla over time, from its formation to the mature structure. The renal inner medulla is unique to mammalian kidneys and is the innermost region of the mammalian kidney. |
| renal outer medulla development | The process whose specific outcome is the progression of the renal outer medulla over time, from its formation to the mature structure. The renal outer medulla is the region of the kidney that lies between the renal cortex and the renal inner medulla. |
| renal vesicle formation | The developmental process pertaining to the initial formation of the renal vesicle from condensed mesenchymal cells. The renal vesicle is the primordial structure of the nephron epithelium, and is formed by the condensation of mesenchymal cells. |
| response to estradiol | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen. |
| response to xenobiotic stimulus | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a xenobiotic, a compound foreign to the organim exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical. |
| smooth muscle cell differentiation | The process in which a relatively unspecialized cell acquires specialized features of a smooth muscle cell; smooth muscle lacks transverse striations in its constituent fibers and are almost always involuntary. |
| stem cell population maintenance | The process by which an organism or tissue maintains a population of stem cells of a single type. This can be achieved by a number of mechanisms: stem cell asymmetric division maintains stem cell numbers; stem cell symmetric division increases them; maintenance of a stem cell niche maintains the conditions for commitment to the stem cell fate for some types of stem cell; stem cells may arise de novo from other cell types. |
| stem cell proliferation | The multiplication or reproduction of stem cells, resulting in the expansion of a stem cell population. A stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells. |
| sympathetic ganglion development | The process whose specific outcome is the progression of a sympathetic ganglion over time, from its formation to the mature structure. |
| synapse organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell). |
| synaptic vesicle clustering | The process that results in grouping synaptic vesicles in presynaptic structures. |
| synaptic vesicle transport | The directed movement of synaptic vesicles. |
| T cell differentiation in thymus | The process in which a precursor cell type acquires the specialized features of a T cell via a differentiation pathway dependent upon transit through the thymus. |
| thymus development | The process whose specific outcome is the progression of the thymus over time, from its formation to the mature structure. The thymus is a symmetric bi-lobed organ involved primarily in the differentiation of immature to mature T cells, with unique vascular, nervous, epithelial, and lymphoid cell components. |
| trachea formation | The process pertaining to the initial formation of a trachea from unspecified parts. The process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the trachea is recognizable. The trachea is the portion of the airway that attaches to the bronchi as it branches. |
| transcription by RNA polymerase II | The synthesis of RNA from a DNA template by RNA polymerase II (RNAP II), originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MATQADLMEL | DMAMEPDRKA | AVSHWQQQSY | LDSGIHSGAT | TTAPSLSGKG | NPEEEDVDTS |
| 70 | 80 | 90 | 100 | 110 | 120 |
| QVLYEWEQGF | SQSFTQEQVA | DIDGQYAMTR | AQRVRAAMFP | ETLDEGMQIP | STQFDAAHPT |
| 130 | 140 | 150 | 160 | 170 | 180 |
| NVQRLAEPSQ | MLKHAVVNLI | NYQDDAELAT | RAIPELTKLL | NDEDQVVVNK | AAVMVHQLSK |
| 190 | 200 | 210 | 220 | 230 | 240 |
| KEASRHAIMR | SPQMVSAIVR | TMQNTNDVET | ARCTAGTLHN | LSHHREGLLA | IFKSGGIPAL |
| 250 | 260 | 270 | 280 | 290 | 300 |
| VKMLGSPVDS | VLFYAITTLH | NLLLHQEGAK | MAVRLAGGLQ | KMVALLNKTN | VKFLAITTDC |
| 310 | 320 | 330 | 340 | 350 | 360 |
| LQILAYGNQE | SKLIILASGG | PQALVNIMRT | YTYEKLLWTT | SRVLKVLSVC | SSNKPAIVEA |
| 370 | 380 | 390 | 400 | 410 | 420 |
| GGMQALGLHL | TDPSQRLVQN | CLWTLRNLSD | AATKQEGMEG | LLGTLVQLLG | SDDINVVTCA |
| 430 | 440 | 450 | 460 | 470 | 480 |
| AGILSNLTCN | NYKNKMMVCQ | VGGIEALVRT | VLRAGDREDI | TEPAICALRH | LTSRHQEAEM |
| 490 | 500 | 510 | 520 | 530 | 540 |
| AQNAVRLHYG | LPVVVKLLHP | PSHWPLIKAT | VGLIRNLALC | PANHAPLREQ | GAIPRLVQLL |
| 550 | 560 | 570 | 580 | 590 | 600 |
| VRAHQDTQRR | TSMGGTQQQF | VEGVRMEEIV | EGCTGALHIL | ARDVHNRIVI | RGLNTIPLFV |
| 610 | 620 | 630 | 640 | 650 | 660 |
| QLLYSPIENI | QRVAAGVLCE | LAQDKEAAEA | IEAEGATAPL | TELLHSRNEG | VATYAAAVLF |
| 670 | 680 | 690 | 700 | 710 | 720 |
| RMSEDKPQDY | KKRLSVELTS | SLFRTEPMAW | NETADLGLDI | GAQGEPLGYR | QDDPSYRSFH |
| 730 | 740 | 750 | 760 | 770 | 780 |
| SGGYGQDALG | MDPMMEHEMG | GHHPGADYPV | DGLPDLGHAQ | DLMDGLPPGD | SNQLAWFDTD |
| L |