O95072
Gene name |
REC8 (REC8L1) |
Protein name |
Meiotic recombination protein REC8 homolog |
Names |
Cohesin Rec8p |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:9985 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for O95072
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-O95072-F1 | Predicted | AlphaFoldDB |
429 variants for O95072
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
RCV001270224 rs370763234 |
353 | T>P | Premature ovarian failure [ClinVar] | Yes |
ClinVar dbSNP |
|
rs772199881 CA7126706 |
3 | Y>* | No |
ExAC gnomAD ClinGen |
|
|
CA612964319 rs1442213754 |
4 | Y>* | No |
ClinGen gnomAD |
|
|
rs775592932 CA257871348 |
4 | Y>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA257871349 rs796165501 |
5 | P>L | No |
ClinGen Ensembl |
|
|
rs1181362356 CA389222373 |
6 | N>S | No |
gnomAD ClinGen |
|
|
CA7126709 rs765239244 |
9 | Q>R | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA389222543 rs1296813328 |
13 | G>R | No |
ClinGen gnomAD |
|
| TCGA novel | 21 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 22 | A>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1288916733 CA389223108 |
24 | R>L | No |
ClinGen TOPMed |
|
|
rs543783644 CA7126730 |
24 | R>S | No |
1000Genomes ExAC gnomAD ClinGen |
|
|
CA7126733 rs767176568 |
27 | R>G | No |
ClinGen ExAC gnomAD |
|
|
CA389223217 rs1594403006 |
28 | L>V | No |
Ensembl ClinGen |
|
|
rs777199091 CA7126736 |
29 | V>A | No |
ExAC gnomAD ClinGen |
|
|
rs755617539 CA7126735 |
29 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA389223249 rs1315710539 |
30 | K>E | No |
ClinGen TOPMed |
|
|
CA7126737 VAR_051722 RCV000845247 rs34075659 |
31 | R>C | No |
ClinGen ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs34075659 CA7126738 |
31 | R>G | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen |
|
|
CA7126740 rs746216054 |
33 | Y>H | No |
ClinGen ExAC gnomAD |
|
|
CA389223385 rs1349479761 |
35 | R>M | No |
ClinGen TOPMed |
|
|
rs1594403142 CA389223411 |
36 | V>G | No |
Ensembl ClinGen |
|
|
rs1356316627 CA389223400 |
36 | V>M | No |
ClinGen gnomAD |
|
|
rs1291473230 CA389223440 |
37 | N>K | No |
gnomAD ClinGen |
|
|
CA389223466 rs1355755065 |
38 | V>M | No |
gnomAD ClinGen |
|
|
rs1279560192 CA389223506 |
39 | V>G | No |
ClinGen gnomAD |
|
|
CA389223509 rs1318726988 |
40 | K>E | No |
gnomAD ClinGen |
|
|
CA257871391 rs370197598 |
43 | E>K | No |
ESP TOPMed gnomAD ClinGen |
|
|
rs772061360 CA7126769 |
44 | E>Q | No |
ClinGen ExAC gnomAD |
|
|
CA7126771 rs775219506 |
45 | I>M | No |
ClinGen ExAC gnomAD |
|
|
CA257871401 rs1033024541 |
47 | N>D | No |
ClinGen gnomAD |
|
|
CA7126773 rs776318769 |
47 | N>K | No |
ClinGen ExAC gnomAD |
|
|
CA7126772 rs773083264 |
47 | N>S | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs1276557034 CA389223892 |
48 | Y>N | No |
ClinGen TOPMed |
|
|
rs1594404005 CA389223942 |
49 | V>M | No |
Ensembl ClinGen |
|
|
CA7126774 rs761377685 |
51 | V>I | No |
ClinGen ExAC gnomAD |
|
|
rs1272908792 CA389224043 |
52 | R>* | No |
gnomAD ClinGen |
|
|
CA389224067 rs1343819607 |
52 | R>P | No |
ClinGen TOPMed gnomAD |
|
|
CA389224052 rs1343819607 |
52 | R>Q | No |
TOPMed gnomAD ClinGen |
|
|
rs764580362 CA7126775 |
53 | V>A | No |
ClinGen ExAC gnomAD |
|
|
rs764580362 CA7126776 |
53 | V>E | No |
ClinGen ExAC gnomAD |
|
|
CA7126778 rs200093612 |
54 | Q>E | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen |
|
|
rs1594404106 CA389224157 |
54 | Q>H | No |
ClinGen Ensembl |
|
|
rs751939300 CA7126779 |
55 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA389224168 rs1398472456 |
55 | P>S | No |
TOPMed ClinGen |
|
|
rs1398472456 CA389224184 |
55 | P>T | No |
ClinGen TOPMed |
|
| TCGA novel | 56 | P>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA7126782 rs753034831 |
57 | Q>K | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA389224327 rs1197168306 |
58 | P>S | No |
ClinGen TOPMed gnomAD |
|
|
CA389224301 rs1197168306 |
58 | P>T | No |
ClinGen TOPMed gnomAD |
|
|
CA389224350 rs1475840583 |
59 | G>C | No |
ClinGen TOPMed gnomAD |
|
|
rs1475840583 CA389224354 |
59 | G>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA7126785 rs749410088 |
60 | L>P | No |
ClinGen ExAC gnomAD |
|
|
rs1326732041 CA389224444 |
61 | P>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
gnomAD ClinGen NCI-TCGA |
|
CA389224457 rs1388492695 |
62 | R>W | No |
gnomAD ClinGen |
|
| TCGA novel | 64 | R>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA257871443 rs940841948 |
64 | R>G | No |
TOPMed gnomAD ClinGen |
|
|
CA389224511 rs746788540 |
64 | R>H | No |
ExAC gnomAD ClinGen |
|
|
CA7126788 rs746788540 |
64 | R>L | No |
ExAC gnomAD ClinGen |
|
|
rs1217464603 CA389224661 |
68 | Y>S | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 69 | L>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 69 | L>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA257871451 rs1040617224 |
69 | L>V | No |
ClinGen TOPMed gnomAD |
|
|
CA7126791 rs370925288 |
71 | A>S | No |
ESP ExAC gnomAD ClinGen |
|
|
rs1482875122 CA389224758 |
72 | Q>H | No |
ClinGen TOPMed |
|
|
CA257871463 rs987911856 |
75 | I>M | No |
TOPMed gnomAD ClinGen |
|
|
CA7126792 rs769505314 |
76 | G>S | No |
ExAC gnomAD ClinGen |
|
|
rs1447951411 CA389224944 |
76 | G>V | No |
gnomAD ClinGen |
|
|
rs552447292 CA7126794 |
78 | I>T | No |
ClinGen 1000Genomes ExAC |
|
|
rs766969462 CA7126795 |
79 | R>C | No |
ClinGen ExAC gnomAD |
|
|
CA389224994 rs1205565323 |
79 | R>H | No |
ClinGen TOPMed |
|
|
rs752168235 CA7126796 |
80 | V>I | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA7126797 rs759974100 |
81 | Y>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA389225071 rs1165711168 |
81 | Y>H | No |
gnomAD ClinGen |
|
|
CA389225167 rs1161407072 |
83 | Q>* | No |
gnomAD ClinGen |
|
|
rs1217024269 CA389225223 |
84 | Q>* | No |
TOPMed ClinGen |
|
|
CA389225266 rs1309674469 |
85 | C>Y | No |
ClinGen TOPMed |
|
|
rs1228273497 CA389225350 |
88 | L>F | No |
ClinGen TOPMed |
|
|
CA389225538 rs1317849480 |
91 | D>N | No |
TOPMed ClinGen |
|
|
rs11547058 CA7126816 |
94 | H>Q | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen |
|
|
rs1336840885 CA389225656 |
94 | H>Y | No |
ClinGen gnomAD |
|
|
CA389225717 rs1359650587 |
95 | I>T | No |
ClinGen gnomAD |
|
|
rs761142959 CA7126817 |
98 | R>C | No |
ClinGen ExAC gnomAD |
|
|
CA257871491 rs530107293 |
98 | R>H | No |
1000Genomes TOPMed gnomAD ClinGen |
|
|
CA257871493 rs530107293 |
98 | R>L | No |
1000Genomes TOPMed gnomAD ClinGen |
|
|
rs367867254 CA7126818 |
99 | L>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs1481584284 CA389225895 |
101 | R>G | No |
gnomAD ClinGen |
|
|
CA7126819 rs754149940 |
101 | R>H | No |
ExAC gnomAD ClinGen |
|
|
rs757328194 CA7126820 |
103 | Q>K | No |
ExAC gnomAD ClinGen |
|
|
rs1482430589 CA389226134 |
107 | R>G | No |
TOPMed gnomAD ClinGen |
|
|
rs200268439 CA257871509 |
107 | R>L | No |
ClinGen TOPMed gnomAD |
|
|
CA257871506 rs200268439 |
107 | R>Q | No |
TOPMed gnomAD ClinGen |
|
|
CA389226251 rs117843614 |
110 | M>R | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen |
|
|
CA7126822 rs117843614 |
110 | M>T | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1378185602 CA389226422 |
113 | E>G | No |
gnomAD ClinGen |
|
|
rs1438856912 CA389226491 |
114 | L>V | No |
gnomAD ClinGen |
|
|
rs758426688 CA7126843 |
121 | N>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs377291381 CA7126845 |
124 | A>T | No |
ClinGen ESP ExAC gnomAD |
|
|
CA389227553 rs1386370082 |
124 | A>V | No |
ClinGen gnomAD |
|
|
rs1296564860 CA389227559 |
125 | M>V | No |
TOPMed gnomAD ClinGen |
|
|
CA389227587 rs1320355958 |
126 | M>I | No |
gnomAD ClinGen |
|
| TCGA novel | 126 | M>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs755144001 TCGA novel CA7126846 |
127 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
NCI-TCGA ClinGen ExAC TOPMed gnomAD |
|
CA389227599 rs1216851832 |
127 | E>Q | No |
gnomAD ClinGen |
|
|
rs777681836 CA7126847 |
130 | E>K | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs1594406068 CA389227693 |
132 | A>V | No |
ClinGen Ensembl |
|
|
rs749068969 CA7126848 |
133 | P>A | No |
ExAC gnomAD ClinGen |
|
|
CA7126849 rs757008950 |
134 | D>V | No |
ClinGen ExAC gnomAD |
|
|
CA389227719 rs1455466952 |
134 | D>Y | No |
ClinGen TOPMed |
|
|
CA389227782 rs1263441890 |
136 | F>S | No |
ClinGen gnomAD |
|
| TCGA novel | 137 | F>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA389227854 rs1422327311 |
139 | M>I | No |
ClinGen TOPMed gnomAD |
|
|
CA257871540 rs112093487 |
140 | M>K | No |
Ensembl ClinGen |
|
|
CA257871541 rs1010263606 |
141 | S>T | No |
gnomAD ClinGen |
|
|
CA389227938 rs1167541865 |
144 | P>L | No |
ClinGen gnomAD |
|
|
rs1271530799 CA389227932 |
144 | P>S | No |
TOPMed ClinGen |
|
|
CA389227981 rs1594406252 |
146 | L>H | No |
ClinGen Ensembl |
|
|
CA389228036 CA7126855 rs769025639 |
148 | S>R | No |
ExAC gnomAD ClinGen |
|
|
CA7126856 rs777098122 |
149 | P>L | No |
ExAC gnomAD ClinGen |
|
|
rs767739537 CA7126857 |
151 | D>H | No |
ExAC gnomAD ClinGen |
|
|
CA257871556 rs767739537 |
151 | D>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ExAC gnomAD ClinGen NCI-TCGA |
|
rs770028121 CA7126858 |
153 | P>S | No |
ExAC gnomAD ClinGen |
|
|
CA7126879 rs771036802 |
155 | I>T | No |
ExAC gnomAD ClinGen |
|
|
CA389229870 rs1438221271 |
156 | R>* | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
gnomAD ClinGen NCI-TCGA |
| TCGA novel | 156 | R>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA7126880 rs774529509 |
157 | H>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA257874489 rs958533563 |
158 | L>H | No |
Ensembl ClinGen |
|
|
rs759494033 CA7126881 |
160 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1226857026 CA389230086 |
162 | A>G | No |
ClinGen TOPMed |
|
|
rs549051039 CA7126887 |
166 | R>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs549051039 CA7126886 |
166 | R>K | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs549051039 CA389230215 |
166 | R>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7126888 rs758115019 |
169 | E>Q | No |
ClinGen ExAC gnomAD |
|
|
rs1566631225 CA389230342 |
170 | I>F | No |
Ensembl ClinGen |
|
|
CA7126890 rs779537225 |
171 | P>L | No |
ExAC gnomAD ClinGen |
|
|
CA389230373 rs1379108841 |
171 | P>S | No |
gnomAD ClinGen |
|
|
rs1345245080 CA389230495 |
174 | V>G | No |
gnomAD ClinGen |
|
|
CA389230537 rs1275824398 |
176 | T>K | No |
ClinGen gnomAD |
|
|
CA389230553 rs1310454084 |
177 | E>Q | No |
ClinGen TOPMed |
|
|
CA389230561 rs1410916617 |
177 | E>V | No |
TOPMed ClinGen |
|
|
CA257874498 rs755663901 |
182 | E>Q | No |
Ensembl ClinGen |
|
|
CA257874826 rs923946065 |
183 | R>K | No |
ClinGen Ensembl |
|
|
CA7126913 rs111554718 |
185 | P>L | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
rs1594417661 CA389231397 |
186 | V>G | No |
Ensembl ClinGen |
|
|
CA7126915 rs535816878 |
186 | V>I | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA257874831 rs754139041 |
190 | P>L | No |
Ensembl ClinGen |
|
|
CA389231484 rs1344447380 |
190 | P>S | No |
TOPMed gnomAD ClinGen |
|
|
rs1055724711 CA257874833 |
191 | P>S | No |
TOPMed ClinGen |
|
|
CA389231553 rs1467711515 |
193 | A>T | No |
TOPMed ClinGen |
|
|
CA257874835 rs1051180605 |
194 | I>T | No |
ClinGen Ensembl |
|
|
CA7126916 rs756654549 |
195 | T>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs995522816 CA257874840 |
197 | L>P | No |
ClinGen TOPMed |
|
|
CA7126919 rs757504895 |
199 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs1359144032 CA389231838 |
201 | P>A | No |
ClinGen gnomAD |
|
|
rs746140010 CA7126921 |
203 | R>Q | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA7126920 rs779198413 |
203 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs772406435 CA7126922 |
204 | M>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs368404055 CA257874847 |
207 | I>M | No |
ESP ClinGen |
|
|
rs775757453 CA7126923 |
207 | I>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1307579482 CA389232307 |
209 | G>V | No |
ClinGen gnomAD |
|
|
rs369656552 CA257874912 |
211 | R>W | Variant assessed as Somatic; 4.643e-05 impact. [NCI-TCGA] | No |
ClinGen ESP NCI-TCGA TOPMed |
|
CA389232352 rs1165778983 |
212 | E>D | No |
ClinGen TOPMed |
|
|
rs770881809 CA7126949 |
212 | E>G | No |
ExAC gnomAD ClinGen |
|
|
CA257874916 rs886107792 |
216 | V>I | No |
TOPMed gnomAD ClinGen |
|
|
CA389232481 rs1482322593 |
217 | S>N | No |
gnomAD ClinGen |
|
|
rs774054681 CA7126950 |
218 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ExAC TOPMed gnomAD ClinGen NCI-TCGA |
|
rs759288187 CA7126951 |
218 | R>H | No |
ClinGen ExAC gnomAD |
|
|
rs771733375 CA7126952 |
219 | R>* | No |
ClinGen ExAC gnomAD |
|
|
rs573005801 CA7126953 RCV000894844 |
219 | R>Q | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
rs1474158669 CA389232603 |
221 | L>M | No |
ClinGen TOPMed |
|
|
rs1418100232 CA389232617 |
222 | D>N | No |
gnomAD ClinGen |
|
|
CA257874924 rs866736378 |
226 | A>E | No |
Ensembl ClinGen |
|
|
CA7126956 rs559059143 |
226 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
1000Genomes ExAC TOPMed gnomAD ClinGen NCI-TCGA |
|
CA257874932 rs1004531135 |
230 | E>A | No |
ClinGen TOPMed |
|
| TCGA novel | 230 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA389232936 rs1594419325 |
231 | A>D | No |
Ensembl ClinGen |
|
| TCGA novel | 231 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA389232984 rs1373066646 |
233 | L>S | No |
TOPMed gnomAD ClinGen |
|
|
CA7126990 rs200534101 |
237 | P>L | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
rs1489690547 CA389235145 |
237 | P>S | No |
gnomAD ClinGen |
|
|
rs546893556 CA7126993 |
238 | R>Q | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA7126992 rs377303811 |
238 | R>W | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen |
|
|
CA257874990 rs879204667 |
239 | L>F | No |
ClinGen gnomAD |
|
|
CA389235219 rs879204667 |
239 | L>I | No |
gnomAD ClinGen |
|
|
rs745871234 CA7126994 |
241 | P>T | No |
ClinGen ExAC gnomAD |
|
|
CA389235335 rs1364125383 |
242 | P>A | No |
gnomAD ClinGen |
|
|
CA7126995 rs374706208 |
242 | P>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA7126997 rs746772445 |
244 | P>H | No |
ClinGen ExAC gnomAD |
|
|
rs768220100 CA7126998 |
245 | A>V | No |
ExAC gnomAD ClinGen |
|
|
rs894059976 CA257874996 |
246 | E>* | No |
ClinGen TOPMed |
|
|
rs1309767267 CA389235773 |
248 | E>D | No |
ClinGen gnomAD |
|
|
CA257875022 rs947839500 |
248 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
Ensembl ClinGen NCI-TCGA |
|
CA7127019 rs747895432 |
249 | G>E | No |
ClinGen ExAC gnomAD |
|
|
CA7127018 rs780848150 |
249 | G>R | No |
ClinGen ExAC gnomAD |
|
|
rs769311697 CA7127020 |
250 | I>T | No |
ExAC gnomAD ClinGen |
|
|
CA389235964 rs1594420684 |
253 | A>V | No |
Ensembl ClinGen |
|
|
CA7127024 rs367730748 |
255 | G>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs771587646 CA7127023 |
255 | G>R | No |
ClinGen ExAC gnomAD |
|
|
CA389236098 rs1374859122 |
257 | E>G | No |
ClinGen TOPMed |
|
|
CA389236171 rs1240437897 |
259 | L>R | No |
ClinGen gnomAD |
|
|
rs759822903 CA7127025 |
261 | L>V | No |
ClinGen ExAC gnomAD |
|
|
CA7127027 rs775701847 |
263 | G>D | No |
ExAC gnomAD ClinGen |
|
|
CA389236260 rs1203025761 |
263 | G>R | No |
TOPMed gnomAD ClinGen |
|
|
CA257875030 rs1002563293 |
265 | E>K | No |
TOPMed ClinGen |
|
|
CA389236366 rs1416226072 |
266 | P>A | No |
gnomAD ClinGen |
|
|
CA7127028 rs372680605 |
266 | P>R | No |
ClinGen ESP ExAC |
|
|
rs375931847 CA7127029 |
267 | G>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1174435902 CA389236377 |
267 | G>R | No |
ClinGen gnomAD |
|
|
rs1474630529 CA389236405 |
268 | A>T | No |
TOPMed ClinGen |
|
|
CA7127031 rs201931905 |
270 | L>P | No |
1000Genomes ExAC TOPMed gnomAD ClinGen |
|
|
rs372143175 CA389236535 |
271 | M>K | No |
ClinGen ESP TOPMed gnomAD |
|
|
rs372143175 CA257875036 |
271 | M>T | No |
ESP TOPMed gnomAD ClinGen |
|
|
CA7127032 rs369722516 |
271 | M>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1566634566 CA389236843 |
273 | V>G | No |
ClinGen Ensembl |
|
|
rs1594421764 CA389236855 |
274 | T>P | No |
ClinGen Ensembl |
|
|
CA389236962 rs1479483500 |
276 | P>A | No |
ClinGen TOPMed |
|
|
rs777574023 CA7127060 |
276 | P>L | No |
ExAC TOPMed ClinGen |
|
|
rs777574023 CA389236971 |
276 | P>Q | No |
ClinGen ExAC TOPMed |
|
|
rs777574023 CA389236986 |
276 | P>R | No |
ExAC TOPMed ClinGen |
|
| rs766853930 | 277 | E>G | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA7127062 rs756955413 |
278 | E>K | No |
ClinGen ExAC TOPMed |
|
|
rs371176226 CA7127064 |
280 | R>C | No |
ClinGen ESP ExAC gnomAD |
|
|
CA7127065 rs772661732 |
280 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ExAC TOPMed gnomAD ClinGen NCI-TCGA |
|
CA389237301 rs1167055394 |
284 | P>T | No |
gnomAD ClinGen |
|
|
CA389237341 rs1426090398 |
285 | P>S | No |
ClinGen gnomAD |
|
|
rs1332294317 CA389237353 |
286 | S>R | No |
ClinGen TOPMed |
|
|
CA7127069 rs776970026 |
287 | P>L | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA7127096 rs770985369 |
290 | R>K | No |
ExAC gnomAD ClinGen |
|
|
rs914077012 CA257875166 |
291 | P>H | No |
ClinGen TOPMed gnomAD |
|
|
rs914077012 RCV000766171 CA389237652 |
291 | P>L | No |
ClinGen ClinVar TOPMed dbSNP gnomAD |
|
|
CA7127097 rs774474766 |
291 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7127099 rs764090923 |
292 | P>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1243650199 CA389237684 |
293 | V>A | No |
ClinGen TOPMed gnomAD |
|
|
rs35425516 VAR_051723 CA7127101 |
294 | P>L | No |
ClinGen UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs35425516 CA7127102 |
294 | P>R | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA389237720 rs201938690 |
295 | P>L | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen |
|
|
CA257875172 rs201938690 |
295 | P>Q | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen |
|
|
CA7127103 rs201938690 |
295 | P>R | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA7127105 rs765859223 |
296 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs1452414847 CA389237766 |
298 | R>C | No |
ClinGen TOPMed gnomAD |
|
|
CA7127106 rs537121841 |
298 | R>H | No |
1000Genomes ExAC TOPMed gnomAD ClinGen |
|
|
rs370302536 CA7127107 |
299 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs548638114 CA7127108 |
299 | R>H | No |
1000Genomes ExAC TOPMed gnomAD ClinGen |
|
|
rs375520807 CA7127109 |
300 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs368528890 CA7127110 |
300 | R>H | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
rs145684232 CA7127112 |
301 | R>H | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen |
|
|
rs145684232 CA7127111 |
301 | R>L | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen |
|
|
rs771161793 CA7127113 |
302 | R>C | No |
ClinGen ExAC gnomAD |
|
|
CA7127114 rs774612019 |
302 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA389237798 rs774612019 |
302 | R>L | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA7127115 rs561000270 |
303 | R>C | No |
ExAC gnomAD ClinGen |
|
|
CA7127116 rs768735719 |
303 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ExAC TOPMed gnomAD ClinGen NCI-TCGA |
|
CA257875188 rs768735719 |
303 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7127118 rs375099298 |
304 | R>L | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen |
|
|
rs375099298 CA7127117 |
304 | R>P | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs375099298 CA7127119 |
304 | R>Q | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA257875190 rs370698508 |
304 | R>W | No |
gnomAD ClinGen |
|
|
CA389237804 rs1212186778 |
305 | L>V | No |
TOPMed ClinGen |
|
|
CA7127121 rs762555872 |
311 | E>D | No |
ClinGen ExAC gnomAD |
|
|
CA7127120 rs773044687 |
311 | E>G | No |
ExAC gnomAD ClinGen |
|
|
CA389237882 rs1178790127 |
311 | E>Q | No |
ClinGen gnomAD |
|
|
rs751095408 CA7127123 |
313 | Q>R | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ExAC TOPMed gnomAD ClinGen NCI-TCGA |
|
CA257875200 rs867449754 |
315 | S>F | No |
gnomAD ClinGen |
|
|
CA7127126 rs199922301 |
316 | P>L | No |
1000Genomes ExAC TOPMed gnomAD ClinGen |
|
|
CA7127128 rs778046197 |
317 | E>D | No |
ClinGen ExAC gnomAD |
|
|
CA389238027 rs1387585115 |
322 | Q>E | No |
gnomAD ClinGen |
|
|
rs1343727654 CA389238066 |
325 | T>P | No |
gnomAD ClinGen |
|
|
CA389238090 rs1241821512 |
327 | A>T | No |
ClinGen TOPMed |
|
|
CA389238106 rs1223058675 |
328 | H>R | No |
gnomAD ClinGen |
|
|
rs1302468495 CA389238117 |
329 | C>R | No |
ClinGen TOPMed |
|
|
CA389238139 rs1308058591 |
331 | E>A | No |
gnomAD ClinGen |
|
|
rs1275240268 CA389238146 |
332 | C>R | No |
ClinGen Ensembl |
|
|
CA7127130 rs368398899 |
332 | C>Y | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA389238167 rs1594425900 |
333 | P>L | No |
ClinGen Ensembl |
|
|
rs1316930084 CA389238174 |
334 | M>T | No |
ClinGen gnomAD |
|
|
CA257875318 rs866153254 |
335 | V>M | No |
Ensembl ClinGen |
|
|
CA7127162 rs538915000 |
337 | P>L | No |
1000Genomes ExAC TOPMed gnomAD ClinGen |
|
|
rs200926587 CA7127165 |
339 | E>K | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA389238215 rs1242027089 |
340 | R>S | No |
gnomAD ClinGen |
|
|
rs1462187061 CA389238229 |
342 | I>M | No |
gnomAD ClinGen |
|
|
CA389238237 rs1241710486 |
344 | G>S | No |
ClinGen gnomAD |
|
| TCGA novel | 345 | P>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1410510130 CA389238251 |
346 | A>S | No |
gnomAD ClinGen |
|
|
CA7127167 rs201409905 |
346 | A>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1387760460 CA389238276 |
349 | F>L | No |
ClinGen gnomAD |
|
|
rs766663838 CA7127170 |
351 | T>I | No |
ExAC gnomAD ClinGen |
|
|
rs766663838 CA7127171 |
351 | T>N | No |
ExAC gnomAD ClinGen |
|
| TCGA novel | 352 | P>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs370763234 CA7127172 |
353 | T>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1566636585 CA389238362 |
356 | G>D | No |
Ensembl ClinGen |
|
|
rs758121872 CA389238352 |
356 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs758121872 CA7127197 |
356 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 358 | L>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs746729095 CA7127199 |
359 | P>T | No |
ExAC TOPMed ClinGen |
|
|
rs905054000 CA257875352 |
360 | P>T | No |
TOPMed gnomAD ClinGen |
|
|
CA7127200 rs768168816 |
361 | E>Q | No |
ExAC gnomAD ClinGen |
|
|
CA389238455 rs1158818312 |
363 | L>Q | No |
ClinGen TOPMed |
|
|
CA389238556 rs1178172552 |
369 | C>Y | No |
TOPMed ClinGen |
|
|
rs952183132 CA257875357 |
370 | A>P | No |
TOPMed ClinGen |
|
|
CA7127202 rs747615352 |
373 | P>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ExAC TOPMed gnomAD ClinGen NCI-TCGA |
|
rs770440827 CA389238626 |
374 | P>A | No |
ClinGen ExAC gnomAD |
|
|
rs773792400 CA7127204 |
374 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7127203 rs770440827 |
374 | P>T | No |
ExAC gnomAD ClinGen |
|
|
rs1284738266 CA389238672 |
377 | L>F | No |
gnomAD ClinGen |
|
|
CA7127206 rs749657278 |
379 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs774558496 CA7127207 |
380 | E>Q | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA389238730 rs1300780855 |
381 | L>P | No |
TOPMed gnomAD ClinGen |
|
| TCGA novel | 383 | E>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs759844614 CA7127209 |
384 | E>A | No |
ExAC gnomAD ClinGen |
|
|
rs767596349 CA7127210 |
385 | A>P | No |
ExAC gnomAD ClinGen |
|
|
rs374592961 CA389238814 |
387 | A>P | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA7127212 rs374592961 |
387 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA257875364 rs758445548 |
388 | E>K | No |
Ensembl ClinGen |
|
|
rs1361919790 CA389238848 |
389 | E>K | No |
gnomAD ClinGen |
|
|
CA389238875 rs1594427352 |
390 | E>G | No |
ClinGen Ensembl |
|
|
rs1566636869 CA389238892 |
391 | R>K | No |
ClinGen Ensembl |
|
|
CA7127216 rs758251368 |
392 | R>K | No |
ExAC gnomAD ClinGen |
|
|
rs201586333 CA7127217 |
394 | I>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA257875369 rs773281134 |
396 | V>I | No |
gnomAD ClinGen |
|
|
CA389239026 rs1243845226 |
399 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
CA7127244 rs779227972 |
403 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 405 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA389239326 rs1198565603 |
406 | A>D | No |
TOPMed gnomAD ClinGen |
|
|
rs1462475654 CA389239312 |
406 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
CA7127246 rs772382519 |
409 | P>R | No |
ClinGen ExAC TOPMed |
|
|
CA389239398 rs1183286252 |
410 | S>N | No |
ClinGen gnomAD |
|
|
CA389239392 rs1183286252 |
410 | S>T | No |
gnomAD ClinGen |
|
|
rs1458638778 CA389239441 |
411 | V>A | No |
ClinGen TOPMed |
|
|
rs17855369 VAR_058128 CA257875403 |
411 | V>F | No |
gnomAD ClinGen UniProt dbSNP |
|
|
rs17855369 CA389239420 |
411 | V>I | No |
gnomAD ClinGen |
|
|
rs1472514826 CA389239500 |
414 | M>T | No |
gnomAD ClinGen |
|
|
rs1177786472 CA389239579 |
417 | L>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1409021522 CA389239583 |
418 | E>K | No |
ClinGen gnomAD |
|
|
rs373995199 CA7127267 |
419 | I>M | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
rs1197892483 CA389241525 |
426 | E>K | No |
ClinGen TOPMed |
|
|
rs541776858 CA7127269 |
427 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA gnomAD |
|
rs377353947 CA7127270 |
428 | K>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs748399051 CA7127271 |
430 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ExAC TOPMed gnomAD ClinGen NCI-TCGA |
|
CA7127272 rs769823637 |
430 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs773319545 CA7127273 |
432 | S>N | No |
ExAC gnomAD ClinGen |
|
|
rs1282580847 CA389241733 |
436 | P>Q | No |
TOPMed ClinGen |
|
|
rs1392656723 CA389241728 |
436 | P>S | No |
ClinGen gnomAD |
|
|
rs759436815 CA7127274 |
437 | E>K | No |
ExAC gnomAD ClinGen |
|
|
CA389241763 rs1292860785 |
438 | E>Q | No |
ClinGen gnomAD |
|
|
CA7127276 rs775450894 |
439 | R>P | No |
ClinGen ExAC gnomAD |
|
|
CA389241786 rs775450894 |
439 | R>Q | No |
ExAC gnomAD ClinGen |
|
|
rs561304496 CA7127275 |
439 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
rs889446790 CA257876643 |
441 | A>V | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 443 | P>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1385465833 CA389241916 |
444 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
rs1385465833 CA389241917 |
444 | E>Q | No |
ClinGen TOPMed |
|
|
CA389241985 rs1192872940 |
447 | A>V | No |
TOPMed gnomAD ClinGen |
|
|
CA257876648 rs898014436 |
448 | P>L | No |
TOPMed gnomAD ClinGen |
|
|
rs764903037 CA7127300 |
449 | E>K | No |
ExAC gnomAD ClinGen |
|
|
CA389242049 rs1223827757 |
450 | A>V | No |
TOPMed ClinGen |
|
|
CA389242107 rs1470095485 |
454 | P>A | No |
ClinGen gnomAD |
|
|
rs762389628 CA7127302 |
455 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA389242185 rs1308376887 |
457 | P>R | No |
TOPMed ClinGen |
|
|
rs1374872236 CA389242229 |
460 | P>S | No |
ClinGen gnomAD |
|
|
rs1226102052 CA389242244 |
461 | E>K | No |
gnomAD ClinGen |
|
|
CA7127305 rs371804350 |
462 | V>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA257876664 rs371804350 |
462 | V>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen NCI-TCGA |
|
rs753070309 CA389242308 |
463 | P>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA389242324 rs1297121919 |
463 | P>R | No |
TOPMed ClinGen |
|
|
rs753070309 CA7127307 |
463 | P>S | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA389242337 rs1566638268 |
464 | M>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
Ensembl ClinGen NCI-TCGA |
| TCGA novel | 465 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA7127308 rs756316686 |
465 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7127310 rs139641571 |
466 | M>I | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA389242407 rs1205478724 |
466 | M>L | No |
gnomAD ClinGen |
|
|
rs1482101982 CA389242438 |
467 | P>T | No |
ClinGen gnomAD |
|
|
rs771199294 CA7127311 |
469 | V>M | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 472 | P>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA389242601 rs1422807774 |
475 | E>G | No |
ClinGen gnomAD |
|
|
rs377231807 CA7127313 |
475 | E>K | No |
ESP ExAC gnomAD ClinGen |
|
|
rs377231807 CA7127314 |
475 | E>Q | No |
ESP ExAC gnomAD ClinGen |
|
|
rs980317297 CA257876675 |
477 | L>I | No |
ClinGen Ensembl |
|
|
rs927307846 CA257876677 |
477 | L>P | No |
TOPMed gnomAD ClinGen |
|
|
CA389242709 rs1201760222 |
479 | L>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
TOPMed ClinGen NCI-TCGA |
|
CA7127316 rs761619102 |
480 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA7127317 rs369785855 |
481 | A>T | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
CA389242813 rs1346644855 |
483 | H>P | No |
gnomAD ClinGen |
|
| TCGA novel | 486 | V>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1292867921 CA389243001 |
487 | A>S | No |
ClinGen gnomAD |
|
|
rs773877656 CA7127338 |
488 | L>V | No |
ExAC gnomAD ClinGen |
|
|
CA389243035 rs1208188713 |
489 | E>D | No |
ClinGen TOPMed gnomAD |
|
|
CA389243074 rs1451000998 |
492 | A>G | No |
gnomAD ClinGen |
|
|
CA389243078 rs1216183412 |
493 | N>H | No |
gnomAD ClinGen |
|
|
CA389243112 rs1219161610 |
495 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
CA257876707 rs922425060 |
497 | D>E | No |
ClinGen Ensembl |
|
|
CA257876705 rs947912168 |
497 | D>H | No |
TOPMed gnomAD ClinGen |
|
|
CA389243145 rs947912168 |
497 | D>N | No |
TOPMed gnomAD ClinGen |
|
|
CA257876710 rs1045000253 |
499 | S>N | No |
ClinGen TOPMed gnomAD |
|
|
CA7127340 rs370759703 |
502 | V>L | No |
1000Genomes ExAC gnomAD ClinGen |
|
|
rs370759703 CA7127341 |
502 | V>M | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1430563519 CA389243310 |
503 | S>L | No |
TOPMed ClinGen |
|
|
CA257876713 rs369868779 |
504 | P>S | No |
ESP TOPMed gnomAD ClinGen |
|
|
rs542057973 CA7127343 |
506 | S>G | No |
ClinGen 1000Genomes ExAC gnomAD |
|
| TCGA novel | 506 | S>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA7127344 rs754220168 |
506 | S>N | No |
ExAC ClinGen |
|
|
rs1386906058 CA389243374 CA389243377 |
506 | S>R | No |
TOPMed gnomAD ClinGen |
|
|
CA257876718 rs889456505 |
507 | P>S | No |
ClinGen TOPMed |
|
|
rs889456505 CA389243384 |
507 | P>T | No |
ClinGen TOPMed |
|
|
rs201131372 CA7127345 |
508 | R>C | No |
ClinGen ExAC gnomAD |
|
|
rs765505808 CA7127346 |
508 | R>H | No |
ExAC gnomAD ClinGen |
|
|
rs750544471 CA7127347 |
512 | A>V | No |
ExAC gnomAD ClinGen |
|
|
rs758434563 CA7127348 |
513 | R>Q | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA389243502 rs1258016918 |
513 | R>W | No |
ClinGen gnomAD |
|
|
rs1594432379 CA389243549 |
514 | V>G | No |
Ensembl ClinGen |
|
|
CA389243562 rs1283700893 |
515 | F>S | No |
gnomAD ClinGen |
|
|
CA389243595 rs1256911774 |
516 | Y>* | No |
TOPMed ClinGen |
|
|
rs148643420 CA389243587 |
516 | Y>C | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA7127349 rs148643420 |
516 | Y>F | No |
1000Genomes ExAC TOPMed gnomAD ClinGen |
|
|
rs1376078999 CA389243813 |
521 | L>F | No |
TOPMed ClinGen |
|
|
CA7127377 rs757113882 |
522 | S>L | No |
ExAC gnomAD ClinGen |
|
|
rs377245718 CA7127378 |
523 | A>V | No |
ClinGen ESP ExAC gnomAD |
|
|
CA7127381 rs771590672 |
525 | Q>E | No |
ClinGen ExAC gnomAD |
|
|
rs1393246383 CA389243954 |
525 | Q>R | No |
ClinGen TOPMed |
|
|
rs779642513 CA7127382 |
527 | L>F | No |
ExAC TOPMed gnomAD ClinGen |
|
| TCGA novel | 527 | L>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1034541946 CA257876790 |
528 | H>L | No |
ClinGen TOPMed |
|
|
rs769299580 CA7127384 |
533 | K>N | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 534 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA7127385 rs777211905 |
537 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs368937002 CA7127386 |
537 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ESP ExAC TOPMed gnomAD ClinGen NCI-TCGA |
|
CA7127387 rs770338744 |
542 | P>A | No |
ClinGen ExAC gnomAD |
|
|
CA7127388 rs773419032 |
542 | P>L | No |
ExAC gnomAD ClinGen |
|
|
CA7127390 rs766464041 |
546 | F>L | No |
ExAC gnomAD ClinGen |
|
|
rs1221769151 CA389244628 |
548 | H>W | No |
gnomAD ClinGen |
No associated diseases with O95072
Functions
6 GO annotations of cellular component
| Name | Definition |
|---|---|
| cohesin complex | A protein complex that is required for sister chromatid cohesion in eukaryotes. The cohesin complex forms a molecular ring complex, and is composed of structural maintenance of chromosomes (SMC) and kleisin proteins. For example, in yeast, the complex is composed of the SMC proteins Smc1p and Smc3p, and the kleisin protein Scc1p. In vertebrates, the complex is composed of the SMC1 (SMC1A or SMC1B) and SMC3 heterodimer attached via their hinge domains to a kleisin (RAD21, REC8 or RAD21L) which links them, and one STAG protein (STAG1, STAG2 or STAG3). |
| kinetochore | A multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules. |
| lateral element | A proteinaceous core found between sister chromatids during meiotic prophase. |
| male germ cell nucleus | The nucleus of a male germ cell, a reproductive cell in males. |
| meiotic cohesin complex | A cohesin complex that mediates sister chromatid cohesion during meiosis; has a subunit composition distinct from that of the mitotic cohesin complex. |
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
1 GO annotations of molecular function
| Name | Definition |
|---|---|
| chromatin binding | Binding to chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. |
13 GO annotations of biological process
| Name | Definition |
|---|---|
| double-strand break repair | The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix. |
| double-strand break repair via homologous recombination | The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule. |
| fertilization | The union of gametes of opposite sexes during the process of sexual reproduction to form a zygote. It involves the fusion of the gametic nuclei (karyogamy) and cytoplasm (plasmogamy). |
| male meiosis I | A cell cycle process comprising the steps by which a cell progresses through male meiosis I, the first meiotic division in the male germline. |
| meiotic cell cycle | Progression through the phases of the meiotic cell cycle, in which canonically a cell replicates to produce four offspring with half the chromosomal content of the progenitor cell via two nuclear divisions. |
| meiotic sister chromatid cohesion | The cell cycle process in which sister chromatids of a replicated chromosome are joined along the entire length of the chromosome during meiosis. |
| oocyte maturation | A developmental process, independent of morphogenetic (shape) change, that is required for an oocyte to attain its fully functional state. Oocyte maturation commences after reinitiation of meiosis commonly starting with germinal vesicle breakdown, and continues up to the second meiotic arrest prior to fertilization. |
| reciprocal meiotic recombination | The cell cycle process in which double strand breaks are formed and repaired through a single or double Holliday junction intermediate. This results in the equal exchange of genetic material between non-sister chromatids in a pair of homologous chromosomes. These reciprocal recombinant products ensure the proper segregation of homologous chromosomes during meiosis I and create genetic diversity. |
| seminiferous tubule development | The reproductive developmental process whose specific outcome is the progression of the seminiferous tubule over time, from its formation to the mature structure. Seminiferous tubules are ducts located in the testicles, and are the specific location of meiosis, and the subsequent creation of gametes, namely spermatozoa. |
| sister chromatid cohesion | The cell cycle process in which the sister chromatids of a replicated chromosome become tethered to each other. |
| spermatid development | The process whose specific outcome is the progression of a spermatid over time, from its formation to the mature structure. |
| spermatogenesis | The developmental process by which male germ line stem cells self renew or give rise to successive cell types resulting in the development of a spermatozoa. |
| synaptonemal complex assembly | The cell cycle process in which the synaptonemal complex is formed. This is a structure that holds paired chromosomes together during prophase I of meiosis and that promotes genetic recombination. |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MFYYPNVLQR | HTGCFATIWL | AATRGSRLVK | REYLRVNVVK | TCEEILNYVL | VRVQPPQPGL |
| 70 | 80 | 90 | 100 | 110 | 120 |
| PRPRFSLYLS | AQLQIGVIRV | YSQQCQYLVE | DIQHILERLH | RAQLQIRIDM | ETELPSLLLP |
| 130 | 140 | 150 | 160 | 170 | 180 |
| NHLAMMETLE | DAPDPFFGMM | SVDPRLPSPF | DIPQIRHLLE | AAIPERVEEI | PPEVPTEPRE |
| 190 | 200 | 210 | 220 | 230 | 240 |
| PERIPVTVLP | PEAITILEAE | PIRMLEIEGE | RELPEVSRRE | LDLLIAEEEE | AILLEIPRLP |
| 250 | 260 | 270 | 280 | 290 | 300 |
| PPAPAEVEGI | GEALGPEELR | LTGWEPGALL | MEVTPPEELR | LPAPPSPERR | PPVPPPPRRR |
| 310 | 320 | 330 | 340 | 350 | 360 |
| RRRRLLFWDK | ETQISPEKFQ | EQLQTRAHCW | ECPMVQPPER | TIRGPAELFR | TPTLSGWLPP |
| 370 | 380 | 390 | 400 | 410 | 420 |
| ELLGLWTHCA | QPPPKALRRE | LPEEAAAEEE | RRKIEVPSEI | EVPREALEPS | VPLMVSLEIS |
| 430 | 440 | 450 | 460 | 470 | 480 |
| LEAAEEEKSR | ISLIPPEERW | AWPEVEAPEA | PALPVVPELP | EVPMEMPLVL | PPELELLSLE |
| 490 | 500 | 510 | 520 | 530 | 540 |
| AVHRAVALEL | QANREPDFSS | LVSPLSPRRM | AARVFYLLLV | LSAQQILHVK | QEKPYGRLLI |
| QPGPRFH |