O43159
Gene name |
RRP8 (KIAA0409, NML, hucep-1) |
Protein name |
Ribosomal RNA-processing protein 8 |
Names |
Cerebral protein 1, Nucleomethylin |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:23378 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
2 structures for O43159
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| 2ZFU | X-ray | 200 A | A/B | 242-456 | PDB |
| AF-O43159-F1 | Predicted | AlphaFoldDB |
493 variants for O43159
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
rs759913983 RCV001291458 CA5857603 |
268 | R>H | Autism spectrum disorder [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
rs761315233 CA5857889 |
4 | E>A | No |
ClinGen ExAC gnomAD |
|
|
CA379450572 rs775967786 |
4 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1423172745 CA379450550 |
5 | P>R | No |
ClinGen gnomAD |
|
|
rs1564839038 CA379450560 |
5 | P>T | No |
ClinGen Ensembl |
|
|
CA379450475 rs1181802227 |
7 | W>* | No |
ClinGen TOPMed gnomAD |
|
|
CA379450460 rs1459104429 |
8 | A>S | No |
ClinGen gnomAD |
|
|
CA5857886 rs759821467 |
9 | E>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs542041353 CA5857884 |
10 | A>G | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA5857885 rs774650029 |
10 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs542041353 CA379450365 |
10 | A>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA379450336 rs1359310768 |
11 | A>S | No |
ClinGen gnomAD |
|
|
CA217311268 rs990863254 |
12 | P>A | No |
ClinGen TOPMed |
|
|
rs372093021 CA5857881 |
12 | P>L | No |
ClinGen ExAC gnomAD |
|
|
CA379450299 rs990863254 |
12 | P>S | No |
ClinGen TOPMed |
|
|
CA5857880 rs748147961 |
14 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA5857878 rs754773299 |
17 | L>P | No |
ClinGen ExAC gnomAD |
|
|
CA379450119 rs1293870449 |
18 | G>W | No |
ClinGen gnomAD |
|
|
rs751156527 CA5857877 |
19 | P>R | No |
ClinGen ExAC gnomAD |
|
|
CA379450092 rs1205755734 |
19 | P>S | No |
ClinGen TOPMed |
|
|
CA217311244 rs995550924 |
20 | V>L | No |
ClinGen TOPMed gnomAD |
|
|
rs150400506 CA5857875 |
21 | I>V | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs764700545 CA5857873 |
22 | S>L | No |
ClinGen ExAC gnomAD |
|
|
rs749917411 CA5857874 |
22 | S>P | No |
ClinGen ExAC gnomAD |
|
|
CA379449949 rs1269786365 |
23 | R>* | No |
ClinGen TOPMed gnomAD |
|
|
rs988625707 CA217311232 |
24 | P>S | No |
ClinGen Ensembl |
|
|
rs1490277553 CA379449905 |
25 | P>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs2659860 RCV000953453 CA5857872 |
25 | P>S | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA379449888 rs1219357981 |
26 | P>L | No |
ClinGen gnomAD |
|
|
rs767924474 CA5857870 |
27 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA5857867 rs151324847 |
29 | S>F | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA5857868 rs151324847 |
29 | S>Y | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA5857866 rs375875643 |
30 | S>* | No |
ClinGen ESP ExAC gnomAD |
|
|
CA379449802 rs1589919623 |
30 | S>P | No |
ClinGen Ensembl |
|
|
rs375875643 CA379449785 |
30 | S>W | No |
ClinGen ESP ExAC gnomAD |
|
|
rs1589919594 CA379449739 |
31 | Q>P | No |
ClinGen Ensembl |
|
|
rs769930522 CA5857864 |
32 | N>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1175861769 CA379449706 |
32 | N>S | No |
ClinGen gnomAD |
|
|
CA5857863 rs748014901 |
33 | K>R | No |
ClinGen ExAC gnomAD |
|
|
CA5857816 rs142424203 |
34 | G>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs749009697 CA5857817 |
34 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA217310679 rs142424203 |
34 | G>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1327236261 CA379448855 |
36 | K>R | No |
ClinGen gnomAD |
|
|
CA5857813 rs769194976 |
37 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA5857812 rs371531443 |
37 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA5857811 rs146487650 |
38 | R>C | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA5857810 COSM930755 rs758749897 |
38 | R>H | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA379448768 rs1483420741 |
41 | L>V | No |
ClinGen TOPMed |
|
|
rs779298923 CA5857808 |
42 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs375134578 CA5857807 |
42 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs572375783 CA5857805 |
43 | T>A | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1472363052 CA379448713 |
43 | T>I | No |
ClinGen TOPMed |
|
|
CA5857804 rs182558656 |
45 | R>G | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA5857802 rs752628806 |
45 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA5857803 rs182558656 |
45 | R>W | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA5857800 rs759554854 |
46 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA379448673 rs759554854 |
46 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA379448654 rs1277955327 |
46 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1023534416 CA217310656 |
47 | L>P | No |
ClinGen Ensembl |
|
|
CA5857799 rs774278994 |
47 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA379448637 rs1589916942 |
48 | E>G | No |
ClinGen Ensembl |
|
|
rs770921004 CA5857798 |
48 | E>Q | No |
ClinGen ExAC gnomAD |
|
|
CA379448618 rs1589916917 |
49 | A>P | No |
ClinGen Ensembl |
|
|
rs201919622 CA5857796 |
49 | A>V | No |
ClinGen ExAC TOPMed |
|
|
rs1417948977 CA379448546 |
51 | S>F | No |
ClinGen gnomAD |
|
|
rs1004823717 CA217310639 |
51 | S>P | No |
ClinGen TOPMed gnomAD |
|
|
CA5857793 rs780795368 |
52 | L>V | No |
ClinGen ExAC gnomAD |
|
|
CA5857792 rs772436414 |
53 | S>F | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA379448525 rs1589916872 |
53 | S>P | No |
ClinGen Ensembl |
|
|
CA379448520 rs772436414 |
53 | S>Y | No |
ClinGen ExAC gnomAD |
|
|
rs746432837 CA5857791 |
54 | Q>H | No |
ClinGen ExAC gnomAD |
|
|
rs1474365089 CA379448479 |
55 | H>R | No |
ClinGen gnomAD |
|
|
CA379448470 rs575858025 |
56 | P>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA5857790 rs575858025 |
56 | P>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1261294757 CA379448453 |
57 | P>R | No |
ClinGen gnomAD |
|
|
CA5857789 rs201951445 |
57 | P>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| rs1564836940 | 58 | S>A | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs753999999 CA5857788 |
58 | S>G | No |
ClinGen ExAC TOPMed |
|
|
CA379448428 rs1316373292 |
58 | S>R | No |
ClinGen gnomAD |
|
|
rs190461845 CA5857787 |
58 | S>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1272507024 CA379448412 |
59 | L>P | No |
ClinGen TOPMed |
|
|
CA5857786 rs756175506 |
60 | C>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1403539099 CA379448349 |
63 | D>N | No |
ClinGen gnomAD |
|
|
CA379448341 rs1488044295 |
63 | D>V | No |
ClinGen gnomAD |
|
|
rs748218611 CA5857783 |
66 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA5857782 rs759546107 |
67 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs1564836862 CA379448257 |
69 | E>G | No |
ClinGen Ensembl |
|
|
rs1342865558 CA379448262 |
69 | E>K | No |
ClinGen gnomAD |
|
|
rs200610838 CA217310624 |
73 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
|
rs200096744 CA5857777 |
75 | C>F | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA5857778 rs766221737 |
75 | C>R | No |
ClinGen ExAC gnomAD |
|
|
CA379448143 rs1481278620 |
76 | P>S | No |
ClinGen Ensembl |
|
|
CA5857775 rs144325798 |
77 | K>Q | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs761576252 CA5857774 |
78 | K>N | No |
ClinGen ExAC gnomAD |
|
|
CA379448087 rs746306115 |
79 | A>E | No |
ClinGen ExAC gnomAD |
|
|
rs768278894 CA5857772 |
79 | A>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs768278894 CA5857773 |
79 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs768278894 CA217310610 |
79 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs746306115 CA5857771 |
79 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA379448075 rs1324509743 |
80 | S>* | No |
ClinGen gnomAD |
|
|
CA379448056 rs1221943546 |
82 | A>P | No |
ClinGen gnomAD |
|
|
rs774851727 CA5857770 |
84 | A>S | No |
ClinGen ExAC gnomAD |
|
|
CA5857769 rs375791527 |
85 | S>P | No |
ClinGen ESP ExAC gnomAD |
|
|
rs749681682 CA5857768 |
86 | A>G | No |
ClinGen ExAC gnomAD |
|
|
CA379448005 rs1304050749 |
87 | E>* | No |
ClinGen TOPMed gnomAD |
|
|
CA217310601 rs1057051219 |
87 | E>A | No |
ClinGen gnomAD |
|
|
CA379447987 rs1334243102 |
88 | V>A | No |
ClinGen gnomAD |
|
|
CA379447995 rs1564836753 |
88 | V>I | No |
ClinGen Ensembl |
|
|
rs1366403677 CA379447982 |
89 | G>R | No |
ClinGen TOPMed |
|
|
rs1296051892 CA379447944 |
91 | K>R | No |
ClinGen TOPMed |
|
|
rs1169563811 CA379447930 |
92 | G>A | No |
ClinGen gnomAD |
|
| TCGA novel | 94 | K>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs748472636 CA5857763 |
95 | K>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1461793532 CA379447880 |
96 | C>R | No |
ClinGen gnomAD |
|
|
CA5857762 rs781070667 |
96 | C>Y | No |
ClinGen ExAC gnomAD |
|
|
CA379447860 rs1201939025 |
97 | Q>* | No |
ClinGen gnomAD |
|
|
CA5857760 rs140361064 |
99 | Q>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs755124703 CA5857761 |
99 | Q>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA379447791 rs1306250227 |
101 | P>L | No |
ClinGen gnomAD |
|
|
CA379447779 rs1266596502 |
102 | P>L | No |
ClinGen Ensembl |
|
|
CA379447789 rs1466099985 |
102 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
CA379447787 rs1466099985 |
102 | P>T | No |
ClinGen TOPMed |
|
|
rs758451843 CA5857758 |
103 | C>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA5857757 rs750163324 |
104 | S>G | No |
ClinGen ExAC gnomAD |
|
|
rs765138753 CA5857756 CA217310581 |
105 | D>E | No |
ClinGen ExAC gnomAD |
|
|
rs1334140149 CA379447743 |
105 | D>G | No |
ClinGen gnomAD |
|
|
rs776350624 CA5857755 |
106 | S>P | No |
ClinGen ExAC gnomAD |
|
|
CA5857754 rs776350624 |
106 | S>T | No |
ClinGen ExAC gnomAD |
|
|
CA379447721 rs1460232961 |
107 | E>K | No |
ClinGen gnomAD |
|
|
CA379447719 rs1460232961 |
107 | E>Q | No |
ClinGen gnomAD |
|
|
rs1389556116 CA379447675 |
109 | E>V | No |
ClinGen TOPMed |
|
|
rs867669642 CA379447659 |
110 | V>A | No |
ClinGen Ensembl |
|
|
rs867669642 CA217310572 |
110 | V>G | No |
ClinGen Ensembl |
|
|
rs774796677 CA5857751 |
110 | V>L | No |
ClinGen ExAC gnomAD |
|
|
CA5857750 rs143875693 |
112 | R>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1181899394 CA379447595 |
114 | K>N | No |
ClinGen gnomAD |
|
|
CA5857749 rs749839727 |
114 | K>Q | No |
ClinGen ExAC gnomAD |
|
|
rs369557794 CA5857748 |
116 | C>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA379447546 rs1251580584 |
117 | H>R | No |
ClinGen gnomAD |
|
|
CA379447519 rs867255416 |
119 | Q>E | No |
ClinGen Ensembl |
|
|
rs867255416 CA217310562 |
119 | Q>K | No |
ClinGen Ensembl |
|
|
CA5857746 rs748263013 |
120 | A>P | No |
ClinGen ExAC gnomAD |
|
|
CA5857745 rs781502115 |
120 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA379447459 rs1589916307 |
123 | G>V | No |
ClinGen Ensembl |
|
|
CA379447426 rs1366320434 |
126 | S>C | No |
ClinGen TOPMed |
|
|
rs1383686073 CA379447419 |
127 | A>P | No |
ClinGen gnomAD |
|
|
rs1383686073 CA379447417 |
127 | A>T | No |
ClinGen gnomAD |
|
|
rs1365161946 CA379447362 |
130 | E>D | No |
ClinGen TOPMed |
|
| TCGA novel | 132 | R>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 132 | R>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA5857740 rs758398478 |
133 | K>Q | No |
ClinGen ExAC gnomAD |
|
|
rs753382551 CA5857736 |
139 | H>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs753382551 CA379447230 |
139 | H>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA217310552 rs868243905 |
139 | H>Q | No |
ClinGen Ensembl |
|
|
CA379447216 rs1161727894 |
140 | A>D | No |
ClinGen gnomAD |
|
|
rs1161727894 CA379447214 |
140 | A>G | No |
ClinGen gnomAD |
|
|
CA5857734 rs760357523 |
141 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs1181277615 CA379447195 |
142 | I>V | No |
ClinGen gnomAD |
|
|
CA379447186 rs1320020136 |
143 | N>Y | No |
ClinGen TOPMed |
|
|
CA5857731 RCV000962108 VAR_051034 rs11040934 |
145 | A>P | No |
ClinGen ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA5857732 rs11040934 |
145 | A>T | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1200686120 CA379447151 |
145 | A>V | No |
ClinGen gnomAD |
|
|
rs773787308 CA379447042 |
150 | N>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA5857730 rs773787308 |
150 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1290157078 CA379447036 |
151 | V>I | No |
ClinGen gnomAD |
|
|
CA379446992 rs1207440743 |
153 | Q>* | No |
ClinGen TOPMed gnomAD |
|
|
rs1207440743 CA379446997 |
153 | Q>K | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 156 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA5857695 rs755920680 |
158 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1243227630 CA379446706 |
159 | W>R | No |
ClinGen gnomAD |
|
|
rs1459748149 CA379446637 |
161 | G>D | No |
ClinGen gnomAD |
|
|
rs752302248 CA5857694 |
161 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA5857692 rs754630383 |
162 | S>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA379446603 rs1338530901 |
162 | S>R | No |
ClinGen gnomAD |
|
|
CA379446611 rs1363005758 |
162 | S>T | No |
ClinGen TOPMed |
|
|
rs969349975 CA379446576 |
163 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
CA217310340 rs969349975 |
163 | T>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1460195449 CA379446569 |
164 | T>A | No |
ClinGen gnomAD |
|
|
rs1248083884 CA379446543 |
165 | N>D | No |
ClinGen TOPMed gnomAD |
|
|
CA5857691 rs751059308 |
165 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs142207265 CA5857690 |
166 | D>H | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs142207265 CA5857689 |
166 | D>Y | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA379446507 rs1452181550 |
167 | P>A | No |
ClinGen gnomAD |
|
|
rs754402097 CA5857688 |
167 | P>L | No |
ClinGen ExAC gnomAD |
|
|
CA379446509 rs1452181550 |
167 | P>T | No |
ClinGen gnomAD |
|
|
rs1331262189 CA379446493 |
168 | P>S | No |
ClinGen gnomAD |
|
|
rs775812660 CA5857685 |
169 | K>Q | No |
ClinGen ExAC gnomAD |
|
|
CA379446458 rs1334594022 |
170 | Q>* | No |
ClinGen TOPMed |
|
|
rs377234642 CA217310324 |
170 | Q>R | No |
ClinGen gnomAD |
|
|
rs138694575 CA5857683 |
173 | G>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA5857684 rs767746973 |
173 | G>W | No |
ClinGen ExAC gnomAD |
|
|
CA5857682 rs145989544 |
174 | S>F | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA379446346 rs1234304469 |
175 | T>I | No |
ClinGen gnomAD |
|
|
rs1030889862 CA217310322 |
176 | S>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
|
COSM689899 rs749154427 CA5857680 |
177 | P>S | lung [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
CA379446284 rs1193126153 |
178 | K>E | No |
ClinGen TOPMed |
|
|
CA379446266 rs1224610239 CA379446268 |
178 | K>N | No |
ClinGen gnomAD |
|
|
CA5857679 rs377406869 |
179 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA379446263 rs377406869 |
179 | P>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA379446246 rs1292545865 |
180 | P>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA5857678 rs769541265 |
182 | T>I | No |
ClinGen ExAC gnomAD |
|
|
CA5857676 rs200715606 |
185 | R>C | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs374541016 CA5857674 |
185 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs374541016 CA5857675 |
185 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1427107209 CA379446139 |
186 | K>E | No |
ClinGen gnomAD |
|
|
rs1417486534 CA379446119 |
187 | Q>* | No |
ClinGen TOPMed |
|
|
rs779551074 CA5857673 |
187 | Q>P | No |
ClinGen ExAC gnomAD |
|
|
rs967428770 CA217310285 |
188 | W>* | No |
ClinGen Ensembl |
|
|
rs192078857 CA5857671 |
189 | R>Q | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
COSM1638936 rs199542011 CA5857672 |
189 | R>W | stomach [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
rs148100776 CA5857669 |
191 | R>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs142862258 CA5857670 |
191 | R>W | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1469361564 CA379446061 |
192 | Q>E | No |
ClinGen gnomAD |
|
|
rs1249339205 CA379446030 |
193 | K>N | No |
ClinGen gnomAD |
|
|
CA379446025 rs1201364840 |
194 | N>D | No |
ClinGen TOPMed gnomAD |
|
|
CA379446014 rs2288283 |
194 | N>K | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs753085836 CA5857668 |
194 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1201364840 CA379446024 |
194 | N>Y | No |
ClinGen TOPMed gnomAD |
|
|
CA379445990 rs1319936369 |
196 | R>K | No |
ClinGen gnomAD |
|
| TCGA novel | 197 | R>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA379445978 rs1198839705 |
197 | R>K | No |
ClinGen gnomAD |
|
|
CA5857666 rs759797658 |
198 | C>R | No |
ClinGen ExAC gnomAD |
|
|
CA5857665 rs567830524 |
198 | C>Y | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
| TCGA novel | 199 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA379445937 rs1589915614 |
200 | N>D | No |
ClinGen Ensembl |
|
| TCGA novel | 201 | K>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA5857663 rs763055185 |
201 | K>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA379445882 CA217310268 rs1047332693 |
203 | Q>H | No |
ClinGen TOPMed gnomAD |
|
|
rs773324145 CA5857662 |
204 | P>L | No |
ClinGen ExAC gnomAD |
|
|
CA379445878 rs773324145 |
204 | P>Q | No |
ClinGen ExAC gnomAD |
|
|
rs1280031844 CA379445868 |
205 | P>R | No |
ClinGen TOPMed |
|
|
rs769700128 CA5857661 |
206 | Q>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1312329604 CA379444789 |
206 | Q>H | No |
ClinGen gnomAD |
|
|
CA379444772 rs748141989 |
207 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA5857660 rs748141989 |
207 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs757940157 CA5857654 |
212 | P>A | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs923047720 CA217308744 |
212 | P>R | No |
ClinGen TOPMed |
|
|
CA5857655 rs757940157 |
212 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs527779708 CA217308736 |
213 | A>P | No |
ClinGen 1000Genomes |
|
|
CA379444614 rs1486842993 |
215 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
| rs1216641054 | 217 | T>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA379444567 rs1379526344 |
217 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
rs1379526344 CA379444571 |
217 | T>K | No |
ClinGen TOPMed gnomAD |
|
|
COSM1293113 rs974485281 CA217308714 |
223 | S>P | large_intestine [Cosmic] | No |
ClinGen cosmic curated TOPMed |
|
rs943067620 CA217308710 |
224 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
rs138964113 CA5857648 |
225 | V>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA5857650 rs781550979 |
225 | V>I | No |
ClinGen ExAC gnomAD |
|
|
CA5857649 rs781550979 |
225 | V>L | No |
ClinGen ExAC gnomAD |
|
|
rs766481289 CA5857646 |
226 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA5857645 rs763214810 |
228 | T>S | No |
ClinGen ExAC gnomAD |
|
|
rs750490267 CA5857644 COSM1194168 |
229 | D>G | lung [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
rs1334346088 CA379444283 |
230 | S>R | No |
ClinGen TOPMed |
|
|
rs1338223993 CA379444263 |
231 | H>D | No |
ClinGen gnomAD |
|
|
CA5857642 rs146897402 |
232 | E>A | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 232 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA5857641 rs146897402 |
232 | E>G | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs527676627 CA5857639 COSM171404 |
234 | R>Q | large_intestine endometrium [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
rs776447418 CA5857640 |
234 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs1209395459 CA379444170 |
235 | A>E | No |
ClinGen TOPMed |
|
| TCGA novel | 235 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs201406950 CA5857637 |
237 | A>D | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA379444138 rs1185884241 |
237 | A>S | No |
ClinGen gnomAD |
|
|
rs1185884241 CA379444140 |
237 | A>T | No |
ClinGen gnomAD |
|
|
rs201406950 CA5857638 |
237 | A>V | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA5857636 rs745570524 |
239 | R>* | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA5857635 rs745570524 |
239 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs531571871 CA5857634 |
239 | R>Q | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA5857633 rs770567575 COSM168148 |
240 | A>T | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
CA5857632 rs748627889 |
241 | R>C | No |
ClinGen ExAC gnomAD |
|
|
rs142606127 COSM930751 CA5857631 |
241 | R>H | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs142606127 CA5857630 |
241 | R>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs758615932 CA5857627 |
242 | M>T | No |
ClinGen ExAC gnomAD |
|
|
CA5857628 rs573529126 |
242 | M>V | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA5857624 rs199533609 |
245 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA5857625 rs368330293 |
245 | R>W | Variant assessed as Somatic; 0.0001874 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA5857623 rs145507676 |
247 | D>V | No |
ClinGen ESP ExAC gnomAD |
|
|
CA5857621 rs760716079 |
250 | R>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs760716079 CA379443893 |
250 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA5857620 rs775133121 |
250 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA379443835 rs1388396484 |
252 | R>C | No |
ClinGen gnomAD |
|
|
CA5857619 rs758710501 |
252 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA5857618 rs370491178 |
253 | Y>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA379443785 rs1483274971 |
254 | L>P | No |
ClinGen gnomAD |
|
|
rs774157861 CA5857617 |
255 | N>D | No |
ClinGen ExAC gnomAD |
|
|
rs770514260 CA5857616 |
255 | N>S | No |
ClinGen ExAC gnomAD |
|
|
rs1340753867 CA379443730 |
257 | Q>L | No |
ClinGen gnomAD |
|
|
CA5857614 rs772829540 |
258 | L>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA379443704 rs1293289586 |
258 | L>S | No |
ClinGen gnomAD |
|
|
CA217308528 rs964135130 |
259 | Y>* | No |
ClinGen Ensembl |
|
|
rs1048096744 CA217308533 |
259 | Y>C | No |
ClinGen TOPMed |
|
|
rs1339389037 CA379443680 |
259 | Y>N | No |
ClinGen gnomAD |
|
|
CA379443631 rs1310087883 |
260 | S>L | No |
ClinGen gnomAD |
|
|
CA379443641 rs1232673434 |
260 | S>P | No |
ClinGen TOPMed |
|
|
rs747622196 CA5857611 |
261 | G>A | No |
ClinGen ExAC |
|
|
CA5857612 rs747622196 |
261 | G>E | No |
ClinGen ExAC |
|
|
rs769033822 CA5857613 |
261 | G>R | No |
ClinGen ExAC gnomAD |
|
|
rs539994234 CA5857608 |
262 | P>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA379443562 rs1427707965 |
263 | S>R | No |
ClinGen TOPMed gnomAD |
|
|
CA217308485 rs1018398046 |
264 | S>G | No |
ClinGen Ensembl |
|
|
rs1230783061 COSM1561653 CA379443549 |
264 | S>N | large_intestine Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA TOPMed |
|
rs746042286 CA379443528 |
265 | A>S | No |
ClinGen ExAC gnomAD |
|
|
rs746042286 CA5857607 |
265 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs1164153259 CA379443517 |
265 | A>V | No |
ClinGen gnomAD |
|
|
rs765563514 CA5857606 |
266 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs765563514 CA379443512 |
266 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA379443499 rs1367967710 |
266 | A>V | No |
ClinGen gnomAD |
|
|
rs757536825 CA5857605 |
267 | Q>* | No |
ClinGen ExAC gnomAD |
|
|
CA379443479 rs1480405747 |
267 | Q>R | No |
ClinGen TOPMed |
|
|
rs748113796 CA5857604 |
268 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA379443290 rs1354959260 |
275 | E>K | No |
ClinGen gnomAD |
|
|
rs375883769 CA5857599 |
276 | A>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs766110083 CA5857597 |
278 | L>I | No |
ClinGen ExAC gnomAD |
|
|
CA5857596 rs140802276 |
279 | L>P | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs769351985 CA5857594 |
280 | Y>* | No |
ClinGen ExAC gnomAD |
|
|
CA379443203 rs1347192247 |
280 | Y>H | No |
ClinGen gnomAD |
|
|
CA379443173 rs1386151963 |
281 | H>Y | No |
ClinGen gnomAD |
|
|
CA5857593 rs747416881 |
282 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA5857592 rs150955423 |
282 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
TCGA novel CA379443125 rs1589915328 |
283 | G>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA Ensembl |
|
rs746198269 CA5857590 |
283 | G>S | No |
ClinGen ExAC gnomAD |
|
|
rs1372034367 CA379443083 |
286 | S>G | No |
ClinGen TOPMed |
|
|
rs772880785 CA217308379 |
288 | V>L | No |
ClinGen Ensembl |
|
|
CA379442964 rs1200710600 |
289 | K>N | No |
ClinGen gnomAD |
|
|
CA217308368 rs898704199 |
289 | K>R | No |
ClinGen TOPMed gnomAD |
|
|
rs1311164409 CA379442916 |
291 | W>* | No |
ClinGen gnomAD |
|
|
CA5857587 rs749590193 |
291 | W>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1264614737 CA379442890 |
292 | P>L | No |
ClinGen gnomAD |
|
|
CA379442860 rs1267049639 |
294 | Q>* | No |
ClinGen gnomAD |
|
|
rs756228255 CA5857585 |
294 | Q>R | No |
ClinGen ExAC gnomAD |
|
|
rs752630159 CA5857584 |
295 | P>L | No |
ClinGen ExAC |
|
| TCGA novel | 297 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA5857582 rs557521273 |
298 | R>C | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs142528867 CA5857581 |
298 | R>H | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs142528867 CA379442763 |
298 | R>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs142528867 CA5857580 |
298 | R>P | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1329315058 CA379442743 |
299 | I>T | No |
ClinGen gnomAD |
|
|
CA5857579 rs201349992 |
299 | I>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA379442718 rs1389509194 |
300 | A>G | No |
ClinGen gnomAD |
|
|
CA5857577 rs200483016 |
300 | A>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
COSM241477 rs200483016 CA5857576 |
300 | A>T | prostate [Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD |
|
rs148726260 CA5857573 |
301 | R>S | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA5857574 rs377558186 |
301 | R>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs144427389 CA5857571 |
304 | R>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA5857570 COSM1509638 rs373412100 |
304 | R>H | lung [Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD |
|
rs1260364550 CA379442612 |
305 | Q>R | No |
ClinGen TOPMed |
|
|
rs202166500 CA379442589 |
306 | R>P | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs202166500 CA5857568 |
306 | R>Q | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs778075365 CA5857569 |
306 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA217308193 rs1026106675 |
308 | A>P | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 308 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA5857543 rs781358266 |
308 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA5857542 rs768874713 |
311 | V>A | No |
ClinGen ExAC gnomAD |
|
|
CA379442420 rs1413069349 |
311 | V>M | No |
ClinGen TOPMed |
|
|
CA379442372 rs1564835469 |
314 | D>N | No |
ClinGen Ensembl |
|
|
CA379442278 rs780072733 |
316 | G>R | No |
ClinGen ExAC gnomAD |
|
|
CA5857540 rs780072733 |
316 | G>S | No |
ClinGen ExAC gnomAD |
|
|
rs1589915127 CA379442197 |
317 | C>W | No |
ClinGen Ensembl |
|
|
CA379442117 rs750208056 |
319 | D>G | No |
ClinGen ExAC gnomAD |
|
|
CA5857538 rs750208056 |
319 | D>V | No |
ClinGen ExAC gnomAD |
|
|
CA5857539 rs758310541 |
319 | D>Y | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA217308150 rs143499349 |
320 | C>R | No |
ClinGen ESP |
|
|
rs139950161 CA5857537 |
321 | R>C | Variant assessed as Somatic; 4.619e-05 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA5857536 rs146000679 |
321 | R>H | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA379442023 rs146000679 |
321 | R>P | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA5857535 rs753492747 |
323 | A>S | No |
ClinGen ExAC gnomAD |
|
|
rs112294029 CA5857534 |
325 | S>G | No |
ClinGen ExAC gnomAD |
|
|
rs760197634 CA5857533 |
325 | S>T | No |
ClinGen ExAC gnomAD |
|
|
rs751968118 CA5857532 |
326 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA217308119 rs766876049 |
327 | R>G | No |
ClinGen ExAC gnomAD |
|
|
rs200201140 CA5857530 COSM3383741 |
327 | R>Q | pancreas [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC TOPMed gnomAD |
|
rs766876049 CA5857531 |
327 | R>W | Variant assessed as Somatic; 0.000231 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs1290750796 CA379441761 |
328 | N>S | No |
ClinGen gnomAD |
|
|
rs17834692 CA5857529 |
329 | P>A | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs17834692 VAR_051035 CA5857528 COSM3687547 |
329 | P>S | large_intestine [Cosmic] | No |
ClinGen cosmic curated UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
CA217308108 rs138239906 |
330 | V>M | No |
ClinGen ESP TOPMed gnomAD |
|
|
CA217308106 rs945107161 |
331 | H>R | No |
ClinGen TOPMed gnomAD |
|
|
CA379441674 rs1410770318 |
332 | C>* | No |
ClinGen TOPMed gnomAD |
|
|
rs762073638 CA5857527 |
333 | F>S | No |
ClinGen ExAC gnomAD |
|
|
CA5857526 rs777015819 |
337 | S>F | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs1322384334 CA379441486 |
338 | L>R | No |
ClinGen gnomAD |
|
|
rs1349947979 CA379441515 |
338 | L>V | No |
ClinGen gnomAD |
|
|
rs150846415 CA5857523 |
340 | P>A | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs745859491 CA5857522 |
341 | R>G | No |
ClinGen ExAC gnomAD |
|
|
rs34685148 CA217308061 |
341 | R>K | No |
ClinGen Ensembl |
|
|
CA5857521 rs745859491 |
341 | R>W | No |
ClinGen ExAC gnomAD |
|
|
CA379441412 rs1306178662 |
342 | V>I | No |
ClinGen TOPMed |
|
|
rs768525155 CA217308041 |
345 | C>Y | No |
ClinGen Ensembl |
|
|
CA5857517 rs141428510 |
347 | M>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA379441200 rs1488804255 |
347 | M>V | No |
ClinGen gnomAD |
|
|
rs1185424100 CA379441121 |
348 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA5857516 rs777430541 |
349 | Q>H | No |
ClinGen ExAC gnomAD |
|
|
CA5857498 rs764823666 |
350 | V>F | No |
ClinGen ExAC gnomAD |
|
|
CA379440866 rs1466326165 |
351 | P>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA379440857 rs1170010654 |
352 | L>M | No |
ClinGen TOPMed |
|
|
CA5857497 rs755761102 |
352 | L>P | No |
ClinGen ExAC gnomAD |
|
|
CA379440846 rs1173796450 |
353 | E>K | No |
ClinGen gnomAD |
|
|
rs1442900532 CA379440783 |
354 | D>E | No |
ClinGen TOPMed |
|
|
rs747763666 CA5857496 |
354 | D>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1324623612 CA379440778 |
355 | E>K | No |
ClinGen gnomAD |
|
|
rs1392101586 CA379440737 |
357 | V>A | No |
ClinGen TOPMed gnomAD |
|
|
rs1392101586 CA379440733 |
357 | V>G | No |
ClinGen TOPMed gnomAD |
|
|
rs780699136 CA5857495 |
359 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs750903148 CA5857493 |
361 | V>G | No |
ClinGen ExAC gnomAD |
|
|
CA5857494 rs754473108 |
361 | V>L | No |
ClinGen ExAC gnomAD |
|
|
rs1255827500 CA379440523 |
363 | C>S | No |
ClinGen gnomAD |
|
|
rs764618052 CA5857490 |
368 | G>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs764618052 CA5857489 COSM689901 |
368 | G>E | lung Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
rs760883930 CA5857488 |
369 | T>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA379440271 rs1335895683 |
369 | T>I | No |
ClinGen TOPMed |
|
|
rs760883930 CA217307830 |
369 | T>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1589914801 CA379440260 |
370 | N>D | No |
ClinGen Ensembl |
|
|
rs767585275 CA5857486 |
370 | N>K | No |
ClinGen ExAC gnomAD |
|
|
CA379440233 rs1339494446 |
372 | R>K | No |
ClinGen TOPMed gnomAD |
|
|
rs1339494446 CA379440232 |
372 | R>M | No |
ClinGen TOPMed gnomAD |
|
|
rs1314352729 CA379440229 |
372 | R>S | No |
ClinGen gnomAD |
|
|
CA5857484 rs774453777 |
373 | D>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1468400759 CA379440106 |
376 | E>K | No |
ClinGen TOPMed |
|
|
CA379439874 rs11603397 |
379 | N>K | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1300937035 CA379439888 |
379 | N>S | No |
ClinGen gnomAD |
|
|
CA5857481 rs555396368 |
381 | V>I | No |
ClinGen 1000Genomes ExAC gnomAD |
|
| TCGA novel | 385 | G>= | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1009742968 CA217307804 |
385 | G>R | No |
ClinGen TOPMed gnomAD |
|
|
CA5857453 rs756684661 |
386 | G>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs756684661 CA5857454 |
386 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1476281829 CA379439450 |
387 | L>F | No |
ClinGen TOPMed |
|
| TCGA novel | 390 | V>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA379439283 rs1332809065 |
391 | A>G | No |
ClinGen gnomAD |
|
|
rs568953297 CA217307709 |
391 | A>T | No |
ClinGen 1000Genomes TOPMed gnomAD |
|
|
CA379439280 rs1332809065 |
391 | A>V | No |
ClinGen gnomAD |
|
|
CA5857451 rs781662830 |
392 | E>G | No |
ClinGen ExAC gnomAD |
|
|
CA5857450 rs755148704 |
393 | V>G | No |
ClinGen ExAC |
|
|
CA5857449 rs751795082 |
394 | S>N | No |
ClinGen ExAC gnomAD |
|
|
rs1324069072 CA379439150 |
396 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs146302834 CA5857448 |
396 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA379439133 rs146302834 |
396 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA5857447 rs758504661 |
397 | F>L | No |
ClinGen ExAC gnomAD |
|
|
rs1158947743 CA379439086 |
398 | E>K | No |
ClinGen gnomAD |
|
|
CA5857446 rs750541715 |
399 | D>H | No |
ClinGen ExAC gnomAD |
|
|
rs142644288 CA5857445 |
401 | R>* | No |
ClinGen ESP ExAC gnomAD |
|
|
rs142644288 CA379438972 |
401 | R>G | No |
ClinGen ESP ExAC gnomAD |
|
|
CA379438963 rs761872259 |
401 | R>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA5857444 COSM1224324 rs761872259 |
401 | R>Q | large_intestine Variant assessed as Somatic; 4.621e-05 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA5857441 rs760343940 |
405 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
COSM1561654 CA5857442 rs763957188 |
405 | R>W | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
CA379438854 rs1311959652 |
406 | A>S | No |
ClinGen TOPMed |
|
|
rs1212877067 CA379438816 |
408 | T>A | No |
ClinGen gnomAD |
|
|
CA379438774 rs1267234180 |
409 | K>E | No |
ClinGen gnomAD |
|
|
CA5857439 rs771663410 |
409 | K>N | No |
ClinGen ExAC gnomAD |
|
|
CA379438721 rs188978085 |
410 | L>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA379438667 rs200309492 |
411 | G>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs200309492 CA5857436 |
411 | G>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1349110286 CA379438683 |
411 | G>S | No |
ClinGen TOPMed |
|
|
rs138539459 CA5857434 CA217307665 |
413 | K>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs375596324 CA5857433 |
414 | I>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1320174799 CA379438519 |
415 | V>D | No |
ClinGen gnomAD |
|
|
rs747192913 CA5857432 |
415 | V>I | No |
ClinGen ExAC gnomAD |
|
|
rs1404809755 CA379438443 |
416 | S>F | No |
ClinGen gnomAD |
|
|
CA379438496 rs1257153655 |
416 | S>P | No |
ClinGen TOPMed |
|
|
rs1183776772 CA379438397 |
417 | K>R | No |
ClinGen TOPMed |
|
|
CA379438404 rs1183776772 |
417 | K>T | No |
ClinGen TOPMed |
|
|
CA5857403 rs370637540 |
418 | D>G | No |
ClinGen ESP ExAC gnomAD |
|
|
rs767484866 CA5857402 |
420 | T>S | No |
ClinGen ExAC gnomAD |
|
|
CA379438098 rs1353958191 |
421 | N>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs1353958191 CA379438096 |
421 | N>T | No |
ClinGen gnomAD |
|
|
rs1589914406 CA379438099 |
421 | N>Y | No |
ClinGen Ensembl |
|
|
CA5857401 rs759041939 |
422 | S>N | No |
ClinGen ExAC gnomAD |
|
|
rs751249144 CA5857400 |
423 | H>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA379438029 rs1411037729 |
423 | H>Y | No |
ClinGen gnomAD |
|
|
CA5857397 rs772646511 |
427 | F>L | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 427 | F>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs769142846 CA5857396 |
429 | F>I | No |
ClinGen ExAC gnomAD |
|
|
CA379437663 rs1182801684 |
432 | T>A | No |
ClinGen TOPMed gnomAD |
|
|
rs1182801684 CA379437641 |
432 | T>S | No |
ClinGen TOPMed gnomAD |
|
|
CA217307432 rs966815822 |
433 | G>R | No |
ClinGen Ensembl |
|
|
CA5857393 rs772441971 |
434 | P>S | No |
ClinGen ExAC TOPMed |
|
|
CA5857391 rs746026587 |
435 | P>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1202462843 CA379437492 |
435 | P>S | No |
ClinGen gnomAD |
|
|
rs779224731 CA5857390 |
436 | L>V | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 440 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs749361170 CA5857388 |
441 | A>G | No |
ClinGen ExAC gnomAD |
|
|
CA379437273 rs1229517975 |
442 | Q>E | No |
ClinGen gnomAD |
|
|
CA5857386 rs756115664 |
443 | L>F | No |
ClinGen ExAC gnomAD |
|
|
rs1049558726 CA217307375 |
445 | G>D | No |
ClinGen TOPMed gnomAD |
|
|
rs781074439 CA5857384 |
448 | L>F | No |
ClinGen ExAC gnomAD |
|
|
rs1281167440 CA379437091 |
448 | L>P | No |
ClinGen gnomAD |
|
|
rs188659976 CA217307365 |
451 | C>R | No |
ClinGen 1000Genomes |
|
|
CA5857381 rs371291547 |
452 | L>F | No |
ClinGen ESP ExAC gnomAD |
|
|
CA5857380 rs762571453 |
452 | L>P | No |
ClinGen ExAC gnomAD |
|
|
rs749934418 CA5857379 |
453 | Y>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs749934418 CA379436914 |
453 | Y>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs554486854 CA5857377 |
455 | R>C | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs776002877 CA5857376 |
455 | R>H | Variant assessed as Somatic; 4.869e-05 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA379436840 rs776002877 |
455 | R>P | No |
ClinGen ExAC TOPMed gnomAD |
No associated diseases with O43159
1 regional properties for O43159
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| conserved_site | UbiE/COQ5 methyltransferase, conserved site | 380 - 394 | IPR023576 |
7 GO annotations of cellular component
| Name | Definition |
|---|---|
| chromatin silencing complex | Any protein complex that mediates changes in chromatin structure that result in transcriptional silencing. |
| cytosol | The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. |
| eNoSc complex | A chromatin silencing complex that recruits histone-modifying enzymes and upregulates silencing of rDNA in response to glucose starvation. |
| nucleolus | A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. |
| nucleoplasm | That part of the nuclear content other than the chromosomes or the nucleolus. |
| plasma membrane | The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. |
| rDNA heterochromatin | A region of heterochromatin located at the rDNA repeats in a chromosome. |
3 GO annotations of molecular function
| Name | Definition |
|---|---|
| methylated histone binding | Binding to a histone in which a residue has been modified by methylation. |
| RNA binding | Binding to an RNA molecule or a portion thereof. |
| S-adenosylmethionine-dependent methyltransferase activity | Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate. |
12 GO annotations of biological process
| Name | Definition |
|---|---|
| cellular response to glucose starvation | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of glucose. |
| energy homeostasis | Any process involved in the balance between food intake (energy input) and energy expenditure. |
| intrinsic apoptotic signaling pathway by p53 class mediator | The series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway is induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, and ends when the execution phase of apoptosis is triggered. |
| methylation | The process in which a methyl group is covalently attached to a molecule. |
| negative regulation of cell cycle | Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle. |
| negative regulation of DNA-templated transcription | Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription. |
| positive regulation of histone deacetylation | Any process that activates or increases the frequency, rate or extent of the removal of acetyl groups from histones. |
| positive regulation of histone methylation | Any process that activates or increases the frequency, rate or extent of the covalent addition of methyl groups to histones. |
| rDNA heterochromatin assembly | The formation of heterochromatin at ribosomal DNA, characterized by the modified histone H3K9me3. |
| regulation of G1 to G0 transition | Any process that modulates the frequency, rate or extent of G1 to G0 transition. |
| regulation of transcription by glucose | Any process involving glucose that modulates the frequency, rate or extent or transcription. |
| rRNA processing | Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. |
1 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| P38961 | RRP8 | 25S rRNA (adenine(645)-N(1))-methyltransferase | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MFEEPEWAEA | APVAAGLGPV | ISRPPPAASS | QNKGSKRRQL | LATLRALEAA | SLSQHPPSLC |
| 70 | 80 | 90 | 100 | 110 | 120 |
| ISDSEEEEEE | RKKKCPKKAS | FASASAEVGK | KGKKKCQKQG | PPCSDSEEEV | ERKKKCHKQA |
| 130 | 140 | 150 | 160 | 170 | 180 |
| LVGSDSAEDE | KRKRKCQKHA | PINSAQHLDN | VDQTGPKAWK | GSTTNDPPKQ | SPGSTSPKPP |
| 190 | 200 | 210 | 220 | 230 | 240 |
| HTLSRKQWRN | RQKNKRRCKN | KFQPPQVPDQ | APAEAPTEKT | EVSPVPRTDS | HEARAGALRA |
| 250 | 260 | 270 | 280 | 290 | 300 |
| RMAQRLDGAR | FRYLNEQLYS | GPSSAAQRLF | QEDPEAFLLY | HRGFQSQVKK | WPLQPVDRIA |
| 310 | 320 | 330 | 340 | 350 | 360 |
| RDLRQRPASL | VVADFGCGDC | RLASSIRNPV | HCFDLASLDP | RVTVCDMAQV | PLEDESVDVA |
| 370 | 380 | 390 | 400 | 410 | 420 |
| VFCLSLMGTN | IRDFLEEANR | VLKPGGLLKV | AEVSSRFEDV | RTFLRAVTKL | GFKIVSKDLT |
| 430 | 440 | 450 | |||
| NSHFFLFDFQ | KTGPPLVGPK | AQLSGLQLQP | CLYKRR |