O00567
Gene name |
NOP56 (NOL5A) |
Protein name |
Nucleolar protein 56 |
Names |
Nucleolar protein 5A |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:10528 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
4 structures for O00567
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| 7MQ8 | EM | 360 A | SA | 1-594 | PDB |
| 7MQ9 | EM | 387 A | SA | 1-594 | PDB |
| 7MQA | EM | 270 A | SA | 1-594 | PDB |
| AF-O00567-F1 | Predicted | AlphaFoldDB |
497 variants for O00567
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
RCV000626898 rs1360494485 CA408024295 |
151 | S>T | Cerebellar ataxia [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
|
RCV001331576 rs2086850165 |
492 | Q>R | Spinocerebellar ataxia type 36 [ClinVar] | Yes |
ClinVar dbSNP |
| TCGA novel | 1 | M>? | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1446735906 CA408023097 |
2 | V>G | No |
ClinGen TOPMed |
|
|
CA408023095 rs1414345034 |
2 | V>L | No |
ClinGen TOPMed gnomAD |
|
|
rs767668504 CA9734182 |
6 | V>L | No |
ClinGen ExAC gnomAD |
|
|
rs574635880 CA9734184 |
10 | H>Q | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA408023158 rs1235143044 |
12 | V>I | No |
ClinGen TOPMed gnomAD |
|
|
CA9734185 rs780331371 |
15 | A>S | No |
ClinGen ExAC gnomAD |
|
|
rs1489302151 CA408023192 |
17 | L>R | No |
ClinGen TOPMed gnomAD |
|
|
CA408023189 rs1285100548 |
17 | L>V | No |
ClinGen TOPMed gnomAD |
|
|
CA408023194 rs1050934252 |
18 | A>S | No |
ClinGen TOPMed gnomAD |
|
|
COSM1235825 rs1050934252 CA310871134 |
18 | A>T | haematopoietic_and_lymphoid_tissue [Cosmic] | No |
ClinGen cosmic curated TOPMed gnomAD |
|
CA408023197 rs1262738915 |
18 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
rs754062261 CA9734186 |
20 | K>E | No |
ClinGen ExAC gnomAD |
|
|
CA310871146 rs754062261 |
20 | K>Q | No |
ClinGen ExAC gnomAD |
|
|
rs1159629500 CA408023217 |
22 | V>M | No |
ClinGen gnomAD |
|
|
CA408023225 rs1361966791 |
23 | E>* | No |
ClinGen gnomAD |
|
|
CA408023230 rs1417310324 |
23 | E>D | No |
ClinGen gnomAD |
|
|
CA9734188 rs779286981 |
24 | E>A | No |
ClinGen ExAC gnomAD |
|
|
CA9734189 rs748611802 |
24 | E>D | No |
ClinGen ExAC gnomAD |
|
|
rs1338150154 CA408023231 |
24 | E>K | No |
ClinGen TOPMed |
|
|
rs1321380199 CA408023250 |
26 | S>R | No |
ClinGen TOPMed gnomAD |
|
|
rs1157301414 CA408023254 |
27 | L>R | No |
ClinGen TOPMed |
|
|
rs116445545 CA408023253 |
27 | L>V | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA9734191 rs777206998 |
28 | L>P | No |
ClinGen ExAC gnomAD |
|
|
CA9734192 rs777206998 |
28 | L>R | No |
ClinGen ExAC gnomAD |
|
|
rs770415375 CA9734193 |
30 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1285327701 CA408023275 |
31 | Q>* | No |
ClinGen gnomAD |
|
| TCGA novel | 31 | Q>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1399198171 CA408023293 |
32 | V>L | No |
ClinGen TOPMed |
|
|
rs1254808713 CA408023302 |
33 | E>G | No |
ClinGen TOPMed gnomAD |
|
|
CA310871624 rs751836247 |
33 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
rs755764596 CA9734233 |
34 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA408023319 rs563205671 |
36 | V>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA9734235 rs563205671 |
36 | V>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1568540126 CA408023328 |
37 | L>P | No |
ClinGen Ensembl |
|
|
CA408023335 rs1360840994 |
38 | N>K | No |
ClinGen TOPMed gnomAD |
|
|
rs1024074874 CA310871662 |
38 | N>S | No |
ClinGen TOPMed |
|
|
rs975288920 CA310871665 |
40 | G>V | No |
ClinGen Ensembl |
|
| TCGA novel | 42 | F>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA408023363 rs1443220613 |
43 | H>D | No |
ClinGen gnomAD |
|
|
rs1488319448 CA408023366 |
43 | H>R | No |
ClinGen TOPMed |
|
|
rs759607127 CA9734239 |
45 | I>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA9734238 rs144187608 |
45 | I>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs775667845 CA9734241 |
50 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA9734242 rs374705763 |
53 | P>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs764481393 CA9734243 |
55 | A>T | No |
ClinGen ExAC gnomAD |
|
|
CA9734244 rs556261152 |
58 | Q>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9734246 rs767917526 |
60 | A>G | No |
ClinGen ExAC gnomAD |
|
|
rs767917526 CA9734247 |
60 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA408023484 rs1568540192 |
62 | E>G | No |
ClinGen Ensembl |
|
|
rs745885546 CA9734249 |
62 | E>Q | No |
ClinGen ExAC gnomAD |
|
|
rs530528052 CA310871815 |
65 | N>S | No |
ClinGen 1000Genomes TOPMed gnomAD |
|
|
rs754696610 CA9734251 |
67 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs754696610 CA408023515 |
67 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs747898509 CA9734253 |
68 | S>C | No |
ClinGen ExAC gnomAD |
|
|
CA408023524 rs747898509 |
68 | S>F | No |
ClinGen ExAC gnomAD |
|
|
rs1432082453 CA408023522 |
68 | S>P | No |
ClinGen TOPMed |
|
| TCGA novel | 68 | S>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA408023525 rs1175242270 |
69 | E>K | No |
ClinGen gnomAD |
|
|
CA408023647 rs774797749 |
71 | V>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs774797749 CA9734333 |
71 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs762509581 CA9734334 |
72 | V>F | No |
ClinGen ExAC gnomAD |
|
|
rs1438931525 CA408023670 |
73 | H>R | No |
ClinGen TOPMed |
|
|
CA408023683 rs1235400983 |
74 | E>G | No |
ClinGen gnomAD |
|
|
CA310872844 rs914525963 |
75 | D>A | No |
ClinGen TOPMed |
|
|
rs539930863 CA310872853 |
77 | R>C | No |
ClinGen 1000Genomes TOPMed gnomAD |
|
|
COSM1641309 rs181807228 COSM1641310 CA9734335 |
77 | R>H | stomach [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC TOPMed gnomAD |
|
rs1233678225 CA408023759 |
78 | L>P | No |
ClinGen gnomAD |
|
|
CA9734336 rs772471382 |
79 | L>F | No |
ClinGen ExAC gnomAD |
|
|
rs1356160848 CA408023804 |
82 | T>S | No |
ClinGen gnomAD |
|
|
rs761498010 CA9734337 |
85 | P>L | No |
ClinGen ExAC gnomAD |
|
|
CA408023845 rs1465969670 |
86 | S>F | No |
ClinGen TOPMed |
|
|
CA408023851 rs1201734807 |
87 | K>R | No |
ClinGen gnomAD |
|
| TCGA novel | 88 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA9734339 rs750240595 |
89 | K>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA408023880 rs1600156646 |
89 | K>R | No |
ClinGen Ensembl |
|
| TCGA novel | 90 | K>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs369349153 CA310872877 |
91 | V>A | No |
ClinGen ESP TOPMed gnomAD |
|
|
CA9734340 rs573280720 |
91 | V>I | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA9734341 rs766330217 |
92 | L>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs1246914952 CA408023907 |
92 | L>P | No |
ClinGen TOPMed |
|
|
CA408023917 rs1600156665 |
93 | L>F | No |
ClinGen Ensembl |
|
|
CA9734342 rs544204994 |
95 | V>A | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs148680348 CA9734343 |
98 | P>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs142063161 CA9734344 |
99 | K>N | No |
ClinGen ESP ExAC TOPMed |
|
|
CA408023958 rs1391268440 |
100 | I>F | No |
ClinGen gnomAD |
|
|
rs1195224303 CA408023962 |
100 | I>M | No |
ClinGen TOPMed gnomAD |
|
|
CA408023957 rs1391268440 |
100 | I>V | No |
ClinGen gnomAD |
|
|
rs937402982 CA310872895 |
101 | G>A | No |
ClinGen Ensembl |
|
|
CA408023975 rs781343694 |
103 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
COSM178396 COSM1651344 rs781343694 CA9734347 |
103 | A>T | Variant assessed as Somatic; 0.0 impact. large_intestine endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
rs770112677 CA9734349 |
108 | L>I | No |
ClinGen ExAC gnomAD |
|
|
rs1379183632 CA408024026 |
110 | Y>C | No |
ClinGen gnomAD |
|
|
CA9734351 rs749831715 |
111 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9734352 rs749831715 |
111 | N>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1379149956 CA408024040 |
112 | C>S | No |
ClinGen TOPMed |
|
|
rs1332100065 CA408024050 |
113 | Q>H | No |
ClinGen TOPMed |
|
|
rs1177465865 CA408024048 |
113 | Q>R | No |
ClinGen gnomAD |
|
|
CA408024053 rs1011151170 |
114 | T>A | No |
ClinGen TOPMed |
|
|
CA310872934 rs1011151170 |
114 | T>P | No |
ClinGen TOPMed |
|
|
CA408024052 COSM352091 rs1011151170 |
114 | T>S | lung [Cosmic] | No |
ClinGen cosmic curated TOPMed |
|
rs889793082 CA310872955 |
116 | G>R | No |
ClinGen TOPMed |
|
|
CA408024072 rs147920994 |
117 | V>A | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs147920994 CA9734355 |
117 | V>G | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA310872957 rs11553609 |
119 | A>T | No |
ClinGen Ensembl |
|
|
RCV000117826 rs2273137 VAR_028793 CA154136 |
121 | I>V | No |
ClinGen ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA408024125 rs1354984320 |
124 | G>E | No |
ClinGen gnomAD |
|
|
CA408024136 rs1219647407 COSM1025423 |
126 | R>C | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
CA408024139 rs1280435680 |
126 | R>L | No |
ClinGen gnomAD |
|
|
CA9734388 rs553986330 |
127 | L>M | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1256126208 CA408024146 |
128 | H>Y | No |
ClinGen gnomAD |
|
| TCGA novel | 129 | F>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1208369890 CA408024172 |
131 | N>S | No |
ClinGen TOPMed gnomAD |
|
|
CA9734391 rs746633097 |
134 | K>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1479619853 CA408024194 |
135 | G>S | No |
ClinGen TOPMed gnomAD |
|
|
rs147587802 CA9734395 |
138 | D>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs11553608 CA408024211 |
138 | D>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs11553608 CA9734394 |
138 | D>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9734398 rs150444414 |
141 | A>T | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA408024260 rs1600157107 |
145 | Q>H | No |
ClinGen Ensembl |
|
|
rs1485002736 CA408024286 |
150 | H>Y | No |
ClinGen TOPMed |
|
|
CA9734399 rs773191784 |
151 | S>G | No |
ClinGen ExAC gnomAD |
|
|
CA408024315 COSM1025424 rs1360289991 |
154 | R>C | endometrium [Cosmic] | No |
ClinGen cosmic curated TOPMed gnomAD |
|
rs760898318 CA9734400 |
154 | R>H | No |
ClinGen ExAC gnomAD |
|
|
rs1568541428 CA408024328 |
156 | K>R | No |
ClinGen Ensembl |
|
| TCGA novel | 157 | V>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
COSM1025425 rs759864950 CA9734403 |
163 | R>Q | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
rs1278935925 CA408024398 |
166 | N>S | No |
ClinGen gnomAD |
|
|
rs753154885 CA9734405 |
167 | M>R | No |
ClinGen ExAC gnomAD |
|
|
rs753154885 CA408024406 |
167 | M>T | No |
ClinGen ExAC gnomAD |
|
|
CA408024403 rs1600157181 |
167 | M>V | No |
ClinGen Ensembl |
|
|
rs777270128 CA9734407 |
171 | S>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1191484531 CA408024438 |
172 | I>V | No |
ClinGen gnomAD |
|
|
CA408024469 rs200027409 |
176 | D>E | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA408024465 rs1452445214 |
176 | D>Y | No |
ClinGen gnomAD |
|
|
CA408024471 rs1394527728 |
177 | Q>E | No |
ClinGen TOPMed gnomAD |
|
|
CA408024514 rs1161539160 |
182 | I>M | No |
ClinGen TOPMed gnomAD |
|
|
CA310873343 rs1006362841 |
184 | T>I | No |
ClinGen gnomAD |
|
|
CA9734411 COSM1025426 rs528788204 |
185 | F>L | endometrium [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA408024536 rs1294429709 |
186 | S>P | No |
ClinGen gnomAD |
|
|
rs769686856 CA9734412 |
187 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs780014888 CA9734413 |
188 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs371285710 CA9734414 COSM1533132 |
188 | R>H | lung Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
| TCGA novel | 189 | V>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs768477850 CA9734415 |
189 | V>I | No |
ClinGen ExAC gnomAD |
|
|
CA9734491 rs770310855 |
191 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA408024953 rs1279392910 |
194 | G>E | No |
ClinGen gnomAD |
|
|
CA9734492 rs776210317 |
194 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA408024960 rs1254997852 |
195 | Y>H | No |
ClinGen TOPMed |
|
|
rs759054429 CA9734493 |
198 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs1185988515 CA408025031 |
201 | V>E | No |
ClinGen gnomAD |
|
|
rs571542247 CA9734496 |
201 | V>M | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs779346591 CA9734498 |
202 | K>N | No |
ClinGen ExAC gnomAD |
|
|
rs751447208 CA9734499 |
203 | I>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1435768250 CA408025055 |
203 | I>S | No |
ClinGen gnomAD |
|
|
CA310873846 rs552074786 |
203 | I>V | No |
ClinGen Ensembl |
|
|
rs145006178 CA9734500 |
205 | N>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9734501 rs138832466 |
205 | N>S | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA408025099 rs1333091442 |
207 | N>S | No |
ClinGen TOPMed |
|
|
CA408025103 rs1417110136 |
208 | A>T | No |
ClinGen gnomAD |
|
|
rs742843 CA9734503 |
209 | T>I | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1398702605 CA408025128 |
210 | Y>C | No |
ClinGen gnomAD |
|
|
rs141936163 CA9734505 |
212 | R>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9734506 rs145743946 COSM213334 |
212 | R>H | breast [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ESP ExAC TOPMed gnomAD |
|
CA408025159 rs1388528730 |
213 | L>F | No |
ClinGen TOPMed |
|
|
CA9734507 rs778316830 |
213 | L>P | No |
ClinGen ExAC gnomAD |
|
|
rs1291773137 CA408025180 |
215 | Q>R | No |
ClinGen TOPMed gnomAD |
|
|
rs747454852 CA9734508 |
216 | F>I | No |
ClinGen ExAC gnomAD |
|
|
CA9734509 rs771484700 |
218 | G>R | No |
ClinGen ExAC gnomAD |
|
|
rs1415457938 CA408025229 |
219 | N>K | No |
ClinGen TOPMed |
|
|
rs777062553 CA9734510 |
220 | R>* | No |
ClinGen ExAC gnomAD |
|
|
rs759082490 CA9734511 |
220 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9734514 rs762613579 |
222 | E>G | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 222 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1478137039 CA408025282 |
224 | N>K | No |
ClinGen TOPMed gnomAD |
|
|
CA408025278 rs1256506667 |
224 | N>S | No |
ClinGen gnomAD |
|
|
TCGA novel rs763834414 CA9734515 |
225 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen ExAC TOPMed gnomAD NCI-TCGA |
|
rs751357087 CA9734516 |
226 | D>E | No |
ClinGen ExAC |
|
|
CA408025298 rs1568541845 |
226 | D>H | No |
ClinGen Ensembl |
|
|
CA9734517 rs761595082 |
227 | K>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9734518 rs767472861 |
227 | K>M | No |
ClinGen ExAC gnomAD |
|
|
CA9734521 rs755067738 |
230 | K>E | No |
ClinGen ExAC TOPMed |
|
|
rs1376321452 CA408025363 |
233 | E>G | No |
ClinGen gnomAD |
|
|
rs1316855378 CA408025376 |
235 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
rs1227660203 CA408025386 |
236 | M>I | No |
ClinGen gnomAD |
|
|
CA9734522 rs148111239 |
236 | M>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1275628775 CA408025380 |
236 | M>V | No |
ClinGen TOPMed |
|
|
CA9734523 rs752930409 |
240 | K>N | No |
ClinGen ExAC gnomAD |
|
|
rs1280369914 CA408025441 |
245 | L>M | No |
ClinGen gnomAD |
|
|
CA9734526 rs747389416 |
249 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 249 | R>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA9734527 rs757630069 |
252 | M>V | No |
ClinGen ExAC gnomAD |
|
|
rs758609993 CA9734541 |
254 | M>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs758609993 CA408025509 |
254 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs764409493 CA9734542 |
255 | D>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA408025528 rs1232106685 |
256 | I>M | No |
ClinGen TOPMed |
|
|
CA9734544 rs139640605 |
256 | I>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1214113074 CA408025529 |
257 | S>P | No |
ClinGen gnomAD |
|
|
CA310874053 rs924687663 |
258 | A>T | No |
ClinGen TOPMed |
|
|
CA310874056 rs201657011 |
258 | A>V | No |
ClinGen Ensembl |
|
|
CA408025544 rs1455743361 |
259 | I>S | No |
ClinGen gnomAD |
|
|
rs1168137565 CA408025540 |
259 | I>V | No |
ClinGen TOPMed gnomAD |
|
|
CA408025550 rs1192051996 |
260 | D>G | No |
ClinGen gnomAD |
|
|
rs769516393 CA310874078 |
261 | L>F | No |
ClinGen Ensembl |
|
|
rs746346520 CA9734547 |
262 | I>L | No |
ClinGen ExAC gnomAD |
|
|
rs147425088 CA310874097 |
264 | I>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA408025575 rs1442695433 |
264 | I>V | No |
ClinGen TOPMed |
|
|
CA408025580 rs1343970218 |
265 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA310874098 rs779718621 |
267 | F>C | No |
ClinGen Ensembl |
|
| TCGA novel | 267 | F>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1436270099 CA408025610 |
269 | S>G | No |
ClinGen TOPMed |
|
|
CA9734549 rs779478293 |
270 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9734550 rs748779510 |
270 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs201961803 CA310874119 |
271 | V>M | No |
ClinGen 1000Genomes |
|
|
CA408025637 rs1438237825 |
273 | S>C | No |
ClinGen TOPMed gnomAD |
|
|
rs1327249671 CA408025649 |
275 | S>C | No |
ClinGen Ensembl |
|
|
rs1327249671 CA408025650 |
275 | S>F | No |
ClinGen Ensembl |
|
|
CA408025662 rs1600158274 |
277 | Y>S | No |
ClinGen Ensembl |
|
|
rs773959398 CA9734552 |
278 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs747781902 CA9734553 |
278 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
| TCGA novel | 281 | L>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs772891600 CA9734556 |
283 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs774199487 CA9734557 |
284 | Y>* | No |
ClinGen ExAC gnomAD |
|
|
COSM1259302 rs149229790 CA9734560 |
286 | R>C | oesophagus [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ESP ExAC TOPMed gnomAD |
|
rs371181487 CA9734561 |
286 | R>H | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA9734562 rs764319713 |
288 | K>R | No |
ClinGen ExAC |
|
|
rs1179039119 CA408025741 |
289 | M>I | No |
ClinGen gnomAD |
|
|
rs751754683 CA408025747 |
290 | S>I | No |
ClinGen ExAC gnomAD |
|
|
rs751754683 CA9734563 |
290 | S>T | No |
ClinGen ExAC gnomAD |
|
|
CA310874176 rs747347004 |
293 | A>V | No |
ClinGen Ensembl |
|
|
rs375245592 CA9734564 |
296 | L>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA408025785 rs1166357559 |
296 | L>V | No |
ClinGen TOPMed gnomAD |
|
|
CA310874177 rs748819142 |
300 | I>T | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 301 | G>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA408025821 rs1354768512 |
302 | E>G | No |
ClinGen gnomAD |
|
|
CA9734567 rs756525659 |
303 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs760993232 CA9734588 |
307 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9734589 rs766775174 |
308 | L>I | No |
ClinGen ExAC gnomAD |
|
|
rs754306599 CA9734590 |
309 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9734592 rs370765506 |
310 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA408026568 rs1346709204 |
312 | A>G | No |
ClinGen gnomAD |
|
|
CA408026587 rs1428414519 |
314 | S>G | No |
ClinGen TOPMed gnomAD |
|
|
rs752139700 CA9734593 |
316 | T>I | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 317 | N>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1600158730 CA408026635 |
317 | N>T | No |
ClinGen Ensembl |
|
|
rs777260707 CA9734595 |
318 | L>V | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 319 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA9734597 rs770802582 |
321 | Y>H | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 323 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs745731864 CA408026745 |
326 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs745731864 CA9734599 |
326 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs769704003 CA310876488 |
328 | I>V | No |
ClinGen Ensembl |
|
|
rs1339635348 CA408026800 |
331 | A>T | No |
ClinGen TOPMed |
|
|
rs1568542265 CA408026830 |
333 | K>E | No |
ClinGen Ensembl |
|
|
CA408026845 rs1195172193 |
334 | A>T | No |
ClinGen gnomAD |
|
|
CA9734602 rs761791175 |
336 | F>L | No |
ClinGen ExAC gnomAD |
|
|
rs1455980697 CA408026947 |
338 | A>S | No |
ClinGen TOPMed |
|
|
rs752680578 CA9734666 |
341 | T>I | No |
ClinGen ExAC gnomAD |
|
|
rs757279494 CA9734667 |
344 | N>D | No |
ClinGen ExAC gnomAD |
|
|
rs781282696 CA9734668 |
345 | T>I | No |
ClinGen ExAC gnomAD |
|
|
CA9734669 rs200676732 |
348 | Y>H | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA408027096 rs1454572364 |
350 | L>F | No |
ClinGen gnomAD |
|
| TCGA novel | 351 | I>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1386979256 CA408027105 |
351 | I>V | No |
ClinGen gnomAD |
|
|
CA408027127 rs1196640718 |
352 | F>L | No |
ClinGen TOPMed |
|
|
CA408027136 rs1600159399 |
353 | H>P | No |
ClinGen Ensembl |
|
|
CA408027156 rs1600159402 |
355 | T>P | No |
ClinGen Ensembl |
|
|
CA9734672 rs769183179 |
357 | I>T | No |
ClinGen ExAC gnomAD |
|
|
CA408027209 rs1240078373 |
359 | R>* | No |
ClinGen gnomAD |
|
|
rs774972076 CA9734673 |
359 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA9734674 rs762429294 |
361 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs1236510542 CA408027237 |
362 | A>T | No |
ClinGen TOPMed |
|
|
rs771665237 CA9734675 |
363 | K>E | No |
ClinGen ExAC gnomAD |
|
|
CA9734676 rs142933900 |
363 | K>R | No |
ClinGen ESP ExAC gnomAD |
|
|
rs1241171818 CA408027268 |
364 | N>S | No |
ClinGen gnomAD |
|
|
rs372119483 CA9734677 |
366 | G>V | No |
ClinGen ESP ExAC gnomAD |
|
|
rs751908488 CA310876879 |
367 | R>C | No |
ClinGen gnomAD |
|
|
CA9734680 rs759304704 |
368 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA408027340 rs1489473491 |
370 | R>Q | No |
ClinGen gnomAD |
|
|
CA634327846 rs1568542698 |
371 | Y>* | No |
ClinGen Ensembl |
|
|
rs765039673 CA9734681 |
371 | Y>H | No |
ClinGen ExAC |
|
|
CA408027389 rs1420189781 |
377 | S>N | No |
ClinGen TOPMed gnomAD |
|
|
rs1162059582 CA408027392 |
377 | S>R | No |
ClinGen gnomAD |
|
|
rs1420189781 CA408027391 |
377 | S>T | No |
ClinGen TOPMed gnomAD |
|
|
rs368994152 CA310876890 |
379 | A>T | No |
ClinGen ESP |
|
|
CA408027413 rs1410174208 |
381 | R>* | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA9734683 rs758338406 |
381 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA408027414 rs758338406 |
381 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1430075807 CA408027418 |
382 | I>V | No |
ClinGen TOPMed |
|
|
CA408027423 COSM1025428 rs1396236537 |
383 | D>N | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
CA9734685 rs750501226 |
385 | F>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9734686 rs756214547 |
386 | S>F | No |
ClinGen ExAC gnomAD |
|
|
CA408027486 rs1244539943 |
390 | T>K | No |
ClinGen gnomAD |
|
|
CA408027488 rs1244539943 |
390 | T>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs904596992 CA310877099 |
391 | S>C | No |
ClinGen TOPMed |
|
|
rs771888944 CA9734748 |
394 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9734750 rs140557182 |
395 | E>D | No |
ClinGen ESP ExAC |
|
|
CA9734749 rs773324442 |
395 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA9734751 rs765430916 |
396 | K>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9734753 rs752928248 |
397 | L>F | No |
ClinGen ExAC gnomAD |
|
|
rs752928248 CA9734752 |
397 | L>V | No |
ClinGen ExAC gnomAD |
|
|
rs764465169 CA408027535 |
398 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9734754 rs764465169 |
398 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs956517280 CA310877146 |
399 | E>Q | No |
ClinGen TOPMed |
|
|
CA408027555 rs1278288823 |
401 | V>A | No |
ClinGen Ensembl |
|
|
CA408027553 rs1237773738 |
401 | V>L | No |
ClinGen Ensembl |
|
| TCGA novel | 403 | E>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
COSM1025430 CA408027574 rs1329470584 |
404 | R>* | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
rs145617434 CA9734755 |
404 | R>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9734758 rs781639146 |
405 | L>V | No |
ClinGen ExAC gnomAD |
|
|
CA9734760 rs541120301 |
408 | Y>C | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1019548699 CA310877160 |
409 | E>A | No |
ClinGen TOPMed |
|
|
CA408027611 rs1211324182 |
410 | T>A | No |
ClinGen TOPMed gnomAD |
|
|
rs1450573941 CA408027637 |
414 | P>A | No |
ClinGen gnomAD |
|
|
rs138219120 CA9734763 |
415 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA408027652 rs1367398253 |
416 | K>N | No |
ClinGen TOPMed |
|
| TCGA novel | 417 | N>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 417 | N>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA9734765 rs747866124 |
421 | M>T | No |
ClinGen ExAC gnomAD |
|
|
rs1418380912 CA408027703 |
423 | E>D | No |
ClinGen TOPMed gnomAD |
|
|
CA9734766 rs771952945 COSM3963428 |
425 | M>V | lung [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
| TCGA novel | 427 | Q>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1357546375 CA408027749 |
428 | A>G | No |
ClinGen TOPMed |
|
|
rs1250152800 CA408027762 |
430 | E>A | No |
ClinGen gnomAD |
|
|
rs1463548760 CA408027766 |
430 | E>D | No |
ClinGen gnomAD |
|
|
TCGA novel CA408027759 rs1600160939 |
430 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA Ensembl |
|
CA9734799 rs766864927 |
431 | A>E | No |
ClinGen ExAC gnomAD |
|
|
rs1186000331 CA408027769 |
431 | A>S | No |
ClinGen gnomAD |
|
|
CA9734800 rs766864927 |
431 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs149581558 CA9734802 |
432 | A>T | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs752225562 CA9734803 |
432 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1301064125 CA408027775 |
433 | A>T | No |
ClinGen TOPMed |
|
|
rs1458717968 CA408027783 |
434 | E>A | No |
ClinGen TOPMed |
|
|
rs371932118 CA9734805 |
434 | E>D | No |
ClinGen ESP ExAC gnomAD |
|
|
CA9734804 rs758140839 |
434 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA9734806 rs746799798 |
437 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs757161402 CA9734807 |
437 | R>K | No |
ClinGen ExAC gnomAD |
|
|
rs1158124779 CA408027812 |
438 | K>T | No |
ClinGen TOPMed |
|
|
CA408027826 rs1293587070 |
440 | E>K | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 442 | Q>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA408027882 rs1600161032 |
444 | K>E | No |
ClinGen Ensembl |
|
|
CA9734810 rs745837701 |
444 | K>T | No |
ClinGen ExAC gnomAD |
|
|
CA310877369 rs922862787 |
446 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
COSM175875 rs143140440 CA9734811 |
446 | R>H | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs1266080816 CA408027939 |
448 | K>N | No |
ClinGen TOPMed gnomAD |
|
|
CA310877386 rs753617790 |
449 | K>* | No |
ClinGen Ensembl |
|
|
CA310877383 rs753617790 |
449 | K>E | No |
ClinGen Ensembl |
|
|
rs577447466 CA310877390 |
449 | K>R | No |
ClinGen Ensembl |
|
|
rs1489525851 CA408027973 |
451 | K>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA408027994 rs368797562 |
453 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs368797562 CA9734815 |
453 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA9734814 rs183494902 |
453 | R>W | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA9734817 rs766790476 |
454 | L>M | No |
ClinGen ExAC gnomAD |
|
|
CA9734818 rs776964549 |
454 | L>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1418128757 CA408028002 |
455 | A>P | No |
ClinGen gnomAD |
|
|
CA9734819 rs148253797 RCV000416134 |
455 | A>V | No |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs764594542 CA9734820 |
456 | A>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9734821 rs74685243 |
456 | A>V | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA9734824 rs763810400 |
458 | A>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
COSM1410901 rs763810400 CA9734823 |
458 | A>V | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA408028039 rs1319654525 |
459 | L>F | No |
ClinGen TOPMed |
|
|
CA9734826 rs374043080 |
460 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA9734827 rs547494052 |
460 | A>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs756090193 CA9734828 |
462 | S>T | No |
ClinGen ExAC gnomAD |
|
|
CA9734829 rs779913584 |
464 | N>D | No |
ClinGen ExAC gnomAD |
|
|
CA310877440 rs983138366 |
465 | S>G | No |
ClinGen TOPMed |
|
|
rs1207976813 CA408028099 |
465 | S>T | No |
ClinGen gnomAD |
|
|
rs1480528537 CA408028121 |
467 | S>G | No |
ClinGen gnomAD |
|
|
rs772176939 CA9734833 |
467 | S>T | No |
ClinGen ExAC gnomAD |
|
|
rs777924552 CA408028132 |
468 | T>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs777924552 CA9734834 |
468 | T>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs747264445 CA9734835 |
469 | P>L | No |
ClinGen ExAC gnomAD |
|
|
CA408028150 rs1290994038 |
470 | E>Q | No |
ClinGen TOPMed |
|
|
CA9734836 rs771134860 |
471 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1600161256 CA408028164 |
471 | E>G | No |
ClinGen Ensembl |
|
|
CA408028172 rs1431520427 |
472 | C>R | No |
ClinGen gnomAD |
|
|
CA408028181 rs1354487476 |
472 | C>W | No |
ClinGen TOPMed |
|
|
CA9734878 rs541896402 COSM1410904 CA9734879 |
475 | M>I | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC TOPMed gnomAD NCI-TCGA |
|
CA154132 rs6753 RCV000117824 VAR_028794 |
475 | M>T | No |
ClinGen ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA310877978 rs927145273 |
476 | S>N | No |
ClinGen TOPMed gnomAD |
|
|
CA408029423 rs927145273 |
476 | S>T | No |
ClinGen TOPMed gnomAD |
|
|
rs1230598973 CA408029436 |
477 | E>A | No |
ClinGen TOPMed |
|
|
rs1031997604 CA310877989 |
479 | P>L | No |
ClinGen TOPMed |
|
|
CA408029468 rs1031997604 |
479 | P>R | No |
ClinGen TOPMed |
|
|
rs1224919828 CA408029480 |
480 | K>N | No |
ClinGen TOPMed |
|
|
rs1278613914 CA408029495 |
481 | K>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
| TCGA novel | 483 | K>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| rs754160900 | 484 | K>missing | Variant assessed as Somatic; 4.72e-05 impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA408029546 rs1356366676 |
485 | Q>E | No |
ClinGen gnomAD |
|
|
CA9734881 rs769269083 |
486 | K>N | No |
ClinGen ExAC |
|
|
rs775063907 CA9734882 |
487 | P>A | No |
ClinGen ExAC TOPMed |
|
|
rs775063907 CA408029568 |
487 | P>S | No |
ClinGen ExAC TOPMed |
|
|
rs1363246992 CA408029589 |
490 | V>F | No |
ClinGen TOPMed |
|
|
CA408029603 rs1229540306 |
491 | P>H | No |
ClinGen gnomAD |
|
|
rs747662989 CA9734883 |
493 | E>V | No |
ClinGen ExAC gnomAD |
|
|
CA9734885 rs772870277 |
496 | M>I | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 496 | M>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1430956798 CA408029668 |
496 | M>T | No |
ClinGen TOPMed |
|
|
rs965550603 CA310878024 |
497 | E>K | No |
ClinGen TOPMed |
|
|
CA9734888 rs766107367 |
499 | P>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1179854817 CA408029709 |
499 | P>Q | No |
ClinGen gnomAD |
|
|
rs766107367 CA9734887 |
499 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA408029715 rs1363448864 |
500 | S>T | No |
ClinGen gnomAD |
|
|
CA9734889 rs759394489 |
501 | I>F | No |
ClinGen ExAC gnomAD |
|
|
CA9734891 rs765131702 |
501 | I>M | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 503 | F>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs757313376 CA9734892 |
503 | F>S | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 504 | S>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA9734894 rs200939502 |
504 | S>T | No |
ClinGen ExAC gnomAD |
|
|
rs756300272 CA9734895 |
505 | K>E | No |
ClinGen ExAC gnomAD |
|
|
rs780477588 CA9734897 |
508 | K>E | No |
ClinGen ExAC gnomAD |
|
|
rs1555780360 CA9734898 |
508 | K>T | No |
ClinGen Ensembl |
|
|
CA310878056 rs891704796 |
509 | K>N | No |
ClinGen TOPMed gnomAD |
|
|
CA9734901 rs755433410 |
510 | K>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9734902 rs779538270 |
511 | S>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs779538270 CA310878059 COSM1025432 |
511 | S>Y | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
rs192854828 CA9734903 |
513 | S>P | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs369383913 CA310878067 |
516 | E>D | No |
ClinGen ESP TOPMed |
|
|
CA9734905 rs771545962 |
518 | M>I | No |
ClinGen ExAC gnomAD |
|
|
rs772613510 CA9734906 |
519 | S>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9734908 rs770566259 |
521 | D>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9734909 rs770566259 |
521 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs552059889 CA9734911 |
525 | T>A | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs762800565 CA9734913 |
526 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs767573273 CA9734914 |
526 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs750451811 CA9734915 |
527 | G>D | No |
ClinGen ExAC gnomAD |
|
|
rs1381327222 CA408030109 |
529 | T>A | No |
ClinGen TOPMed gnomAD |
|
|
CA310878082 rs995618019 |
529 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
CA310878081 rs995618019 |
529 | T>S | No |
ClinGen TOPMed gnomAD |
|
|
rs375247632 CA9734916 |
530 | S>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA408030136 rs1324607002 |
531 | I>V | No |
ClinGen gnomAD |
|
|
CA310878088 rs766676480 |
532 | P>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9734917 rs766676480 |
532 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs754162757 CA9734918 |
533 | K>E | No |
ClinGen ExAC gnomAD |
|
|
CA9734919 rs755343499 |
534 | R>K | No |
ClinGen ExAC |
|
|
CA408030223 rs1346896525 |
537 | S>F | No |
ClinGen gnomAD |
|
|
rs1205749231 CA408030232 |
538 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
CA408030245 rs1460874560 |
539 | P>S | No |
ClinGen gnomAD |
|
|
rs1189291969 CA408030260 |
540 | K>E | No |
ClinGen gnomAD |
|
|
rs779174960 CA9734920 |
541 | E>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9734922 rs528365293 |
542 | E>A | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs951691348 CA310878101 |
542 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
rs951691348 CA408030297 |
542 | E>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs1404897869 CA408030324 |
544 | V>L | No |
ClinGen gnomAD |
|
|
CA9734924 rs746472210 |
547 | P>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA408030465 rs1381533271 |
551 | G>A | No |
ClinGen gnomAD |
|
|
CA408030508 rs745554497 |
553 | R>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA310878105 rs758151740 |
553 | R>S | No |
ClinGen Ensembl |
|
|
CA9734927 rs745554497 |
553 | R>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA310878107 rs969408428 |
554 | S>N | No |
ClinGen TOPMed gnomAD |
|
|
CA408030532 rs1351111730 |
555 | G>D | No |
ClinGen TOPMed gnomAD |
|
|
rs1323073446 CA408030542 |
556 | S>F | No |
ClinGen gnomAD |
|
|
rs769515043 CA9734928 |
556 | S>T | No |
ClinGen ExAC gnomAD |
|
|
CA408030544 rs1600163258 |
557 | K>Q | No |
ClinGen Ensembl |
|
|
CA408030553 rs1456067334 |
557 | K>R | No |
ClinGen gnomAD |
|
|
CA9734930 rs775159291 |
559 | K>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs762859722 CA9734931 |
560 | R>G | No |
ClinGen ExAC gnomAD |
|
|
CA310878148 rs901085164 |
563 | S>F | No |
ClinGen TOPMed gnomAD |
|
|
rs567898547 CA9734934 |
565 | E>A | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs567898547 CA408030711 |
565 | E>G | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs768469522 CA9734933 |
565 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1429091369 CA408030726 |
566 | E>K | No |
ClinGen gnomAD |
|
|
CA9734935 rs535603018 |
567 | P>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA408030759 rs535603018 |
567 | P>Q | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs754071190 CA9734937 |
569 | S>G | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 569 | S>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA408030794 rs759853283 |
569 | S>N | No |
ClinGen ExAC gnomAD |
|
|
CA9734938 rs759853283 |
569 | S>T | No |
ClinGen ExAC gnomAD |
|
|
rs1403087174 CA408030831 |
571 | G>E | No |
ClinGen gnomAD |
|
|
rs6115354 CA9734939 |
572 | P>L | No |
ClinGen ExAC |
|
|
rs989954432 CA310878171 |
573 | E>K | No |
ClinGen Ensembl |
|
|
rs752320891 CA9734940 |
575 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
RCV000117825 CA154134 VAR_014471 rs5856 |
576 | V>A | No |
ClinGen ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA408031008 rs1266174307 |
577 | G>A | No |
ClinGen TOPMed gnomAD |
|
|
CA408031007 rs1266174307 |
577 | G>D | No |
ClinGen TOPMed gnomAD |
|
|
rs1249654090 CA408031020 |
578 | K>E | No |
ClinGen TOPMed |
|
|
rs780689291 CA9734944 |
578 | K>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9734943 rs756720146 |
578 | K>R | No |
ClinGen ExAC TOPMed |
|
|
rs1268570538 CA408031105 |
580 | S>N | No |
ClinGen gnomAD |
|
|
rs745461760 CA9734945 |
581 | S>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA310878197 rs962321750 |
581 | S>T | No |
ClinGen TOPMed |
|
|
CA310878206 rs890822235 |
582 | K>E | No |
ClinGen Ensembl |
|
|
rs769313738 CA9734947 |
582 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1386608180 CA408031202 |
583 | K>R | No |
ClinGen gnomAD |
|
|
rs779821109 CA9734948 |
584 | K>T | No |
ClinGen ExAC gnomAD |
|
|
rs1319943809 CA408031280 |
586 | K>E | No |
ClinGen gnomAD |
|
|
rs568498641 CA310878221 |
587 | F>I | No |
ClinGen Ensembl |
|
|
COSM723233 rs1568545131 CA408031368 |
588 | H>R | lung Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated Ensembl NCI-TCGA |
|
CA310878226 rs368420807 |
591 | S>P | No |
ClinGen Ensembl |
|
|
CA408031462 rs1370877802 |
592 | Q>R | No |
ClinGen gnomAD |
|
|
CA9734950 rs151092895 |
593 | E>* | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA408031476 rs151092895 |
593 | E>K | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA408031495 rs1296305623 |
594 | D>Y | No |
ClinGen gnomAD |
|
|
rs1371443851 CA408031526 |
595 | D>E | No |
ClinGen gnomAD |
|
|
rs1391091205 CA408031541 |
595 | D>W | No |
ClinGen gnomAD |
1 associated diseases with O00567
[MIM: 614153]: Spinocerebellar ataxia 36 (SCA36)
A form of spinocerebellar ataxia, a clinically and genetically heterogeneous group of cerebellar disorders. Patients show progressive incoordination of gait and often poor coordination of hands, speech and eye movements, due to degeneration of the cerebellum with variable involvement of the brainstem and spinal cord. SCA36 is characterized by complicated clinical features, with ataxia as the first symptom, followed by characteristic late-onset involvement of the motor neuron system. Ataxic symptoms, such as gait and truncal instability, ataxic dysarthria, and uncoordinated limbs, start in late forties to fifties. Characteristically, affected individuals exhibit tongue atrophy with fasciculation. Progression of motor neuron involvement is typically limited to the tongue and main proximal skeletal muscles in both upper and lower extremities. {ECO:0000269|PubMed:21683323}. Note=The disease is caused by variants affecting the gene represented in this entry. Caused by large hexanucleotide CGCCTG repeat expansions within intron 1. These expansions induce RNA foci and sequester the RNA-binding protein SRSF2. In addition, the transcription of MIR1292, a microRNA gene located just 19 bp 3' of the GGCCTG repeat, is significantly decreased.
Without disease ID
- A form of spinocerebellar ataxia, a clinically and genetically heterogeneous group of cerebellar disorders. Patients show progressive incoordination of gait and often poor coordination of hands, speech and eye movements, due to degeneration of the cerebellum with variable involvement of the brainstem and spinal cord. SCA36 is characterized by complicated clinical features, with ataxia as the first symptom, followed by characteristic late-onset involvement of the motor neuron system. Ataxic symptoms, such as gait and truncal instability, ataxic dysarthria, and uncoordinated limbs, start in late forties to fifties. Characteristically, affected individuals exhibit tongue atrophy with fasciculation. Progression of motor neuron involvement is typically limited to the tongue and main proximal skeletal muscles in both upper and lower extremities. {ECO:0000269|PubMed:21683323}. Note=The disease is caused by variants affecting the gene represented in this entry. Caused by large hexanucleotide CGCCTG repeat expansions within intron 1. These expansions induce RNA foci and sequester the RNA-binding protein SRSF2. In addition, the transcription of MIR1292, a microRNA gene located just 19 bp 3' of the GGCCTG repeat, is significantly decreased.
9 GO annotations of cellular component
| Name | Definition |
|---|---|
| box C/D RNP complex | A ribonucleoprotein complex containing a box C/D type RNA that can carry out ribose-2'-O-methylation of target RNAs. Box C/D type RNAs are widespread in eukaryotes and in Archaea, suggesting that an RNA-based guide mechanism for directing specific RNA 2'-O-ribose methylations was present in the common ancestor of Archaea and Eukarya. |
| cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
| fibrillar center | A structure found most metazoan nucleoli, but not usually found in lower eukaryotes; surrounded by the dense fibrillar component; the zone of transcription from multiple copies of the pre-rRNA genes is in the border region between these two structures. |
| membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
| nucleolus | A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. |
| nucleoplasm | That part of the nuclear content other than the chromosomes or the nucleolus. |
| pre-snoRNP complex | A ribonucleoprotein complex that contains a precursor small nucleolar RNA (pre-snoRNA) and associated proteins, and forms during small nucleolar ribonucleoprotein complex (snoRNP) assembly. Pre-snoRNP complexes may contain proteins not found in the corresponding mature snoRNP complexes. |
| small-subunit processome | A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins. |
| sno(s)RNA-containing ribonucleoprotein complex | A ribonucleoprotein complex that contains an RNA molecule of the snoRNA family and associated proteins. Many are involved in a step of processing of rRNA molecules: cleavage, 2'-O-methylation, or pseudouridylation, but other RNA types can be targets as well. The majority fall into one of two classes, box C/D type or box H/ACA type, which are conserved across eukaryotes and archaea. Other members include the telomerase RNA and the ribonuclease MRP RNA. |
4 GO annotations of molecular function
| Name | Definition |
|---|---|
| cadherin binding | Binding to cadherin, a type I membrane protein involved in cell adhesion. |
| histone methyltransferase binding | Binding to a histone methyltransferase enzyme. |
| RNA binding | Binding to an RNA molecule or a portion thereof. |
| snoRNA binding | Binding to a small nucleolar RNA. |
1 GO annotations of biological process
| Name | Definition |
|---|---|
| rRNA processing | Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. |
3 homologous proteins in AiPD
| 10 | 20 | 30 | 40 | 50 | 60 |
| MVLLHVLFEH | AVGYALLALK | EVEEISLLQP | QVEESVLNLG | KFHSIVRLVA | FCPFASSQVA |
| 70 | 80 | 90 | 100 | 110 | 120 |
| LENANAVSEG | VVHEDLRLLL | ETHLPSKKKK | VLLGVGDPKI | GAAIQEELGY | NCQTGGVIAE |
| 130 | 140 | 150 | 160 | 170 | 180 |
| ILRGVRLHFH | NLVKGLTDLS | ACKAQLGLGH | SYSRAKVKFN | VNRVDNMIIQ | SISLLDQLDK |
| 190 | 200 | 210 | 220 | 230 | 240 |
| DINTFSMRVR | EWYGYHFPEL | VKIINDNATY | CRLAQFIGNR | RELNEDKLEK | LEELTMDGAK |
| 250 | 260 | 270 | 280 | 290 | 300 |
| AKAILDASRS | SMGMDISAID | LINIESFSSR | VVSLSEYRQS | LHTYLRSKMS | QVAPSLSALI |
| 310 | 320 | 330 | 340 | 350 | 360 |
| GEAVGARLIA | HAGSLTNLAK | YPASTVQILG | AEKALFRALK | TRGNTPKYGL | IFHSTFIGRA |
| 370 | 380 | 390 | 400 | 410 | 420 |
| AAKNKGRISR | YLANKCSIAS | RIDCFSEVPT | SVFGEKLREQ | VEERLSFYET | GEIPRKNLDV |
| 430 | 440 | 450 | 460 | 470 | 480 |
| MKEAMVQAEE | AAAEITRKLE | KQEKKRLKKE | KKRLAALALA | SSENSSSTPE | ECEEMSEKPK |
| 490 | 500 | 510 | 520 | 530 | 540 |
| KKKKQKPQEV | PQENGMEDPS | ISFSKPKKKK | SFSKEELMSS | DLEETAGSTS | IPKRKKSTPK |
| 550 | 560 | 570 | 580 | 590 | |
| EETVNDPEEA | GHRSGSKKKR | KFSKEEPVSS | GPEEAVGKSS | SKKKKKFHKA | SQED |