Q9V118

PR
Gene name
rrp42
Protein name
Exosome complex component Rrp42
Names
Species
Pyrococcus abyssi (strain GE5 / Orsay)
KEGG Pathway
pab:PAB0421
EC number
Protein Class

Descriptions

The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.

Autoinhibitory domains (AIDs)

43-133 (Predicted disordered autoinhibitory region) PR

Target domain

Relief mechanism

Assay

cis-regPred

Accessory elements

No accessory elements

References

Autoinhibited structure

Activated structure

5 structures for Q9V118

Entry ID Method Resolution Chain Position Source
2PNZ X-ray 214 A B 1-274 PDB
2PO0 X-ray 230 A B 1-274 PDB
2PO1 X-ray 194 A B 1-274 PDB
2PO2 X-ray 241 A B 1-274 PDB
AF-Q9V118-F1 Predicted AlphaFoldDB

No variants for Q9V118

Variant ID(s) Position Change Description Diseaes Association Provenance
No variants for Q9V118

No associated diseases with Q9V118

2 regional properties for Q9V118

Type Name Position InterPro Accession
domain Exoribonuclease, phosphorolytic domain 1 33 - 167 IPR001247
domain Exoribonuclease, phosphorolytic domain 2 192 - 256 IPR015847

Functions

Description
EC Number
Subcellular Localization
  • Cytoplasm
PANTHER Family
PANTHER Subfamily
PANTHER Protein Class
PANTHER Pathway Category No pathway information available

2 GO annotations of cellular component

Name Definition
cytoplasm The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
exosome (RNase complex) A ribonuclease complex that has 3-prime to 5-prime exoribonuclease activity and possibly endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured.

No GO annotations of molecular function

Name Definition
No GO annotations for molecular function

1 GO annotations of biological process

Name Definition
RNA catabolic process The chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.

No homologous proteins in AiPD

UniProt AC Gene Name Protein Name Species Evidence Code
No homologous proteins
10 20 30 40 50 60
MSDNEIVAGI MRDHIINLLK EGKRIDDRGF EDYRPIEIEV GVIEKAEGSA LVKLGSTQVL
70 80 90 100 110 120
VGIKTSLGEP FPDTPNMGVM TTNVELVPLA SPTFEPGPPD ERAIELARVI DRGIRESKAL
130 140 150 160 170 180
NLEKMVIVPG KIVRVVFIDV HVLDHDGNLM DAIGIAAIAA LLNARVPKVR YNEETGEVET
190 200 210 220 230 240
LDETEPLPVE KIPVPVTFAK IGNILVVDPS LDEELVMDGK ITITTDETGH ISAVQKSEGG
250 260 270
AFKLEEVMYA VETAFKKAEE IRKLILEAVE KAKQ