Q9ULW3
Gene name |
ABT1 |
Protein name |
Activator of basal transcription 1 |
Names |
Fz-10, hFz10, FzE7, hABT1, Basal transcriptional activator |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:29777 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q9ULW3
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q9ULW3-F1 | Predicted | AlphaFoldDB |
295 variants for Q9ULW3
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| rs782050243 | 1 | M>? | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA363240865 rs1554144517 |
2 | E>K | No |
ClinGen gnomAD |
|
|
CA3675308 rs782100852 |
3 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA363240878 rs1554144520 |
4 | E>Q | No |
ClinGen gnomAD |
|
|
CA3675310 rs781878046 |
5 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA363240887 rs781878046 |
5 | E>Q | No |
ClinGen ExAC gnomAD |
|
|
rs782679594 COSM3715373 CA363240895 |
6 | S>* | upper_aerodigestive_tract [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
CA3675311 rs782543304 |
6 | S>A | No |
ClinGen ExAC gnomAD |
|
|
rs782679594 CA3675312 |
6 | S>L | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 7 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs563288722 CA3675313 |
7 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA363240898 rs563288722 |
7 | E>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1554144525 CA363240904 |
8 | K>Q | No |
ClinGen gnomAD |
|
|
CA363240912 rs1581468821 |
9 | A>T | No |
ClinGen Ensembl |
|
|
CA3675315 rs782603117 |
10 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs782603117 CA363240918 |
10 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3675316 rs782230542 |
10 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3675317 rs782373630 |
11 | T>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1347178825 CA363240929 |
12 | E>* | No |
ClinGen TOPMed |
|
|
CA363240934 CA363240933 rs149473775 |
12 | E>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs143081387 CA3675320 |
13 | Q>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA3675319 rs143081387 |
13 | Q>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA363240945 rs1554144529 |
14 | E>G | No |
ClinGen gnomAD |
|
|
rs1309980592 CA363240942 |
14 | E>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA136328555 rs1022530159 |
15 | P>L | No |
ClinGen gnomAD |
|
|
rs991099116 CA136328554 |
15 | P>S | No |
ClinGen gnomAD |
|
|
CA3675321 rs781937269 |
16 | L>Q | No |
ClinGen ExAC gnomAD |
|
|
CA3675322 rs536915270 |
18 | G>E | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA136328558 rs968684075 |
18 | G>R | No |
ClinGen Ensembl |
|
|
CA363240972 rs1354105304 |
19 | T>K | No |
ClinGen TOPMed gnomAD |
|
|
CA363240971 rs1554144536 |
19 | T>S | No |
ClinGen gnomAD |
|
|
CA3675324 rs781995841 |
20 | E>D | No |
ClinGen ExAC gnomAD |
|
|
CA3675325 rs782140804 |
21 | Q>E | No |
ClinGen ExAC gnomAD |
|
|
CA3675327 rs367775660 |
22 | T>A | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA3675326 rs367775660 |
22 | T>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA363241001 rs1430510159 |
24 | D>V | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 24 | D>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1554144537 CA363241006 |
25 | A>T | No |
ClinGen gnomAD |
|
|
rs371015299 CA3675329 |
25 | A>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1554144542 CA363241017 |
26 | E>D | No |
ClinGen gnomAD |
|
| TCGA novel | 26 | E>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs781816337 CA3675331 |
27 | E>D | No |
ClinGen ExAC gnomAD |
|
|
rs976133749 CA136328571 |
28 | E>K | No |
ClinGen gnomAD |
|
|
rs782489929 CA363241034 |
29 | Q>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs782489929 CA3675332 |
29 | Q>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs573455866 CA3675335 |
30 | E>D | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1266116791 CA363241054 |
31 | E>D | No |
ClinGen TOPMed gnomAD |
|
|
rs1554144545 CA363241055 |
32 | S>T | No |
ClinGen gnomAD |
|
|
rs782202066 CA363241062 |
33 | E>* | No |
ClinGen ExAC gnomAD |
|
|
CA3675337 rs782202066 |
33 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs1480687677 CA363241068 |
34 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
CA3675338 rs782466757 |
35 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs1581468949 CA363241086 |
36 | A>V | No |
ClinGen Ensembl |
|
|
CA363241088 rs1554144548 |
37 | C>R | No |
ClinGen gnomAD |
|
|
CA363241092 rs1554144549 |
37 | C>S | No |
ClinGen gnomAD |
|
|
CA363241094 rs1231899282 |
37 | C>W | No |
ClinGen TOPMed |
|
|
rs1554144551 CA363241098 |
38 | G>D | No |
ClinGen gnomAD |
|
|
rs1202011165 CA363241095 |
38 | G>S | No |
ClinGen TOPMed |
|
|
CA3675339 rs536052779 |
39 | S>N | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs552789549 CA363241106 CA136328583 |
39 | S>R | No |
ClinGen 1000Genomes TOPMed gnomAD |
|
|
CA363241113 rs1554144553 |
40 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA3675340 rs782242254 |
40 | K>R | No |
ClinGen ExAC gnomAD |
|
|
rs1222791089 CA363241115 |
41 | K>E | No |
ClinGen TOPMed |
|
|
rs3800302 CA363241121 |
41 | K>N | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA363241123 rs1224351105 |
42 | R>P | No |
ClinGen TOPMed |
|
|
rs782027697 CA3675343 |
42 | R>W | No |
ClinGen ExAC gnomAD |
|
|
rs1554144558 CA363241131 |
43 | V>A | No |
ClinGen gnomAD |
|
|
rs1554144557 CA363241126 |
43 | V>I | No |
ClinGen gnomAD |
|
|
CA3675346 rs782317752 |
44 | V>M | No |
ClinGen ExAC gnomAD |
|
|
CA363241141 rs1554144560 |
45 | P>L | No |
ClinGen gnomAD |
|
|
CA136328593 rs888387964 |
45 | P>S | No |
ClinGen gnomAD |
|
|
CA3675348 rs782076734 |
47 | I>M | No |
ClinGen ExAC gnomAD |
|
|
rs1450528643 CA363241154 |
48 | V>M | No |
ClinGen TOPMed |
|
| TCGA novel | 49 | Y>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1407276185 CA363241164 |
49 | Y>C | No |
ClinGen TOPMed |
|
|
CA3675350 rs545121699 |
51 | G>D | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA3675349 rs782731559 |
51 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs146266057 CA3675353 |
52 | H>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA3675352 rs782794203 |
52 | H>Y | No |
ClinGen ExAC gnomAD |
|
|
rs1581469063 CA363241186 |
53 | I>T | No |
ClinGen Ensembl |
|
|
CA3675354 rs139459203 |
53 | I>V | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA3675356 rs781843884 |
54 | P>L | No |
ClinGen ExAC gnomAD |
|
|
CA363241194 rs1561909785 |
55 | P>S | No |
ClinGen Ensembl |
|
|
CA3675358 rs781793691 |
58 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1419083446 CA363241215 |
58 | R>W | No |
ClinGen TOPMed gnomAD |
|
|
CA363241224 rs782573712 |
60 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3675362 rs782195448 |
61 | H>N | No |
ClinGen ExAC gnomAD |
|
|
rs782340027 CA3675363 |
61 | H>P | No |
ClinGen ExAC gnomAD |
|
|
rs377045670 CA363241234 |
61 | H>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 61 | H>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA3675366 rs782232408 |
62 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
COSM383450 rs782232408 CA3675365 |
62 | V>L | lung [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
rs782014336 CA3675368 |
63 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs782014336 CA3675367 |
63 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA363241243 rs1554144573 |
64 | N>H | No |
ClinGen gnomAD |
|
|
CA363241249 rs1305015800 |
64 | N>K | No |
ClinGen TOPMed |
|
|
rs1316394756 CA363241248 |
64 | N>S | No |
ClinGen TOPMed gnomAD |
|
|
CA3675369 rs139570163 |
65 | L>F | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA363241258 rs1554144577 |
66 | L>F | No |
ClinGen gnomAD |
|
|
rs782765729 CA3675372 |
67 | S>G | No |
ClinGen ExAC gnomAD |
|
|
rs149790448 CA3675373 |
67 | S>R | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA363241268 rs1314664164 |
68 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
CA3675374 rs782152317 |
68 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs782820868 CA3675375 |
69 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
rs1387605021 CA363241274 |
69 | Y>H | No |
ClinGen TOPMed |
|
|
CA136328637 rs1022859057 |
71 | E>K | No |
ClinGen gnomAD |
|
|
CA3675377 rs782461597 |
72 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA363241336 rs1445948377 |
78 | Q>R | No |
ClinGen TOPMed gnomAD |
|
|
rs1385408224 CA363241345 |
79 | A>V | No |
ClinGen TOPMed |
|
|
CA363241368 rs1581469581 |
81 | D>A | No |
ClinGen Ensembl |
|
|
CA363241374 rs144740190 |
82 | R>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs144740190 CA3675405 |
82 | R>P | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs144740190 CA3675404 |
82 | R>Q | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs782247399 CA3675403 |
82 | R>W | No |
ClinGen ExAC gnomAD |
|
|
CA363241397 rs1419322336 |
86 | R>C | No |
ClinGen TOPMed gnomAD |
|
|
rs1554144673 CA363241399 |
86 | R>H | No |
ClinGen gnomAD |
|
|
CA363241400 rs1554144673 |
86 | R>P | No |
ClinGen gnomAD |
|
|
rs114186056 CA3675407 |
87 | K>E | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA363241404 rs1554144675 |
87 | K>T | No |
ClinGen gnomAD |
|
|
rs868968300 CA363241421 |
89 | K>R | No |
ClinGen Ensembl |
|
| rs781785112 | 89 | K>missing | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1199443918 CA363241418 |
89 | K>E | No |
ClinGen TOPMed gnomAD |
|
|
rs782317107 CA3675409 |
90 | A>E | No |
ClinGen ExAC gnomAD |
|
|
CA3675413 rs374428829 |
92 | A>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA3675412 rs782352605 |
92 | A>P | No |
ClinGen ExAC gnomAD |
|
|
CA363241437 rs782352605 |
92 | A>T | No |
ClinGen ExAC gnomAD |
|
|
CA3675414 rs374428829 |
92 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA3675415 rs782787385 |
93 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1325543426 CA363241449 |
94 | A>V | No |
ClinGen TOPMed |
|
| TCGA novel | 95 | G>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA363241455 rs1365662981 |
95 | G>V | No |
ClinGen TOPMed gnomAD |
|
|
CA363241466 rs1329676700 |
97 | K>T | No |
ClinGen TOPMed gnomAD |
|
|
CA3675420 rs782499564 |
98 | K>R | No |
ClinGen ExAC gnomAD |
|
|
rs1430533894 CA363241480 |
99 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs782793727 CA3675421 |
99 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3675422 rs560636123 |
101 | Y>D | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA3675423 rs560636123 |
101 | Y>H | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA363241494 rs1176338571 |
102 | T>S | No |
ClinGen TOPMed |
|
|
CA136328742 rs933609537 |
105 | Y>N | No |
ClinGen Ensembl |
|
|
rs1432089829 CA363241523 |
106 | T>A | No |
ClinGen TOPMed |
|
|
CA3675424 rs782576966 |
107 | E>K | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 108 | G>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA3675425 rs782202284 |
108 | G>E | No |
ClinGen ExAC gnomAD |
|
|
CA363241553 rs1581469705 |
110 | V>G | No |
ClinGen Ensembl |
|
| TCGA novel | 111 | E>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1554144704 CA363241574 |
113 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA3675427 rs782604281 |
116 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs782238826 CA3675428 |
117 | I>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3675429 rs782377397 |
119 | K>Q | No |
ClinGen ExAC gnomAD |
|
|
CA363241619 rs1554144710 |
120 | R>C | No |
ClinGen gnomAD |
|
|
CA363241620 rs782010945 |
120 | R>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs782010945 CA3675430 |
120 | R>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA363241617 rs1554144710 |
120 | R>S | No |
ClinGen gnomAD |
|
|
CA3675432 COSM1181465 rs782312171 |
121 | V>M | large_intestine [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
CA363241628 rs782082481 |
122 | A>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3675434 rs782082481 |
122 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA363241627 rs782082481 COSM1442693 |
122 | A>T | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA3675435 rs552345044 |
122 | A>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
| TCGA novel | 123 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs782002448 CA3675436 |
124 | S>G | No |
ClinGen ExAC gnomAD |
|
|
rs782145465 CA3675437 |
124 | S>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs782460604 CA3675440 |
128 | T>A | No |
ClinGen ExAC gnomAD |
|
|
rs1554144717 CA363241668 |
128 | T>M | No |
ClinGen gnomAD |
|
|
rs1307360204 CA363241671 |
129 | P>R | No |
ClinGen TOPMed gnomAD |
|
|
CA3675442 rs781848064 |
129 | P>S | No |
ClinGen ExAC gnomAD |
|
|
CA363241674 rs782490659 |
130 | M>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs782490659 CA3675443 |
130 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA363241693 rs1554144720 |
132 | A>G | No |
ClinGen gnomAD |
|
|
rs781877703 CA3675445 |
133 | R>C | No |
ClinGen ExAC gnomAD |
|
|
CA363241697 rs1336640036 |
133 | R>H | No |
ClinGen TOPMed gnomAD |
|
|
rs782567643 CA3675447 |
135 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA363241709 rs782199636 |
135 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs782199636 CA3675448 |
135 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1554144722 CA363241724 |
137 | P>R | No |
ClinGen gnomAD |
|
|
rs1160604620 CA363241736 |
139 | R>H | No |
ClinGen TOPMed gnomAD |
|
|
CA363241751 rs1400805322 |
141 | D>G | No |
ClinGen TOPMed gnomAD |
|
|
rs1400805322 CA363241752 |
141 | D>V | No |
ClinGen TOPMed gnomAD |
|
|
CA363241773 rs1379246052 |
144 | N>T | No |
ClinGen TOPMed |
|
|
rs1554144725 CA363241791 |
146 | K>N | No |
ClinGen gnomAD |
|
|
CA363241789 rs1176403323 |
146 | K>R | No |
ClinGen TOPMed |
|
|
rs1554144770 CA363241809 |
147 | Y>F | No |
ClinGen gnomAD |
|
|
rs1554144768 CA363241805 |
147 | Y>H | No |
ClinGen gnomAD |
|
|
CA3675461 rs782137190 COSM1181461 |
150 | R>H | large_intestine [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
rs1554144772 CA363241850 |
153 | W>S | No |
ClinGen gnomAD |
|
|
CA363241859 rs1554144775 |
154 | S>C | No |
ClinGen gnomAD |
|
|
rs1561910263 CA363241862 COSM3829868 |
155 | H>Y | Variant assessed as Somatic; impact. breast [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated Ensembl NCI-TCGA |
|
CA3675465 rs782446409 |
158 | E>Q | No |
ClinGen ExAC gnomAD |
|
|
rs782670086 CA3675469 |
161 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA |
|
CA3675470 rs782290662 |
162 | F>L | No |
ClinGen ExAC gnomAD |
|
|
CA363241912 rs1554144777 |
162 | F>S | No |
ClinGen gnomAD |
|
|
rs1554144779 CA363241923 |
163 | E>D | No |
ClinGen gnomAD |
|
|
CA363241926 rs1554144780 COSM1181463 |
164 | R>C | large_intestine [Cosmic] | No |
ClinGen cosmic curated gnomAD |
|
rs782312676 CA3675471 |
164 | R>H | No |
ClinGen ExAC gnomAD |
|
|
CA3675472 rs782582907 |
165 | Q>* | No |
ClinGen ExAC gnomAD |
|
|
rs1554144782 CA363241941 |
166 | V>G | No |
ClinGen gnomAD |
|
|
rs782364537 CA3675474 |
167 | R>C | No |
ClinGen ExAC gnomAD |
|
|
rs1554144783 CA363241946 |
167 | R>H | No |
ClinGen gnomAD |
|
|
CA363241970 rs1561910301 |
171 | L>W | No |
ClinGen Ensembl |
|
|
CA3675476 rs61748270 |
173 | A>V | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs538835370 CA3675480 |
180 | R>C | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA3675482 rs782097640 COSM296148 |
180 | R>H | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
CA363242030 rs782097640 |
180 | R>L | No |
ClinGen ExAC gnomAD |
|
|
rs538835370 CA3675481 |
180 | R>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1224970187 CA363242039 |
181 | E>D | No |
ClinGen TOPMed |
|
|
CA363242045 rs1360394619 |
182 | T>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
CA3675483 rs199547663 |
185 | Y>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1554144784 CA363242064 |
185 | Y>H | No |
ClinGen TOPMed |
|
|
rs1554144785 CA363242071 |
186 | L>I | No |
ClinGen gnomAD |
|
|
CA136328840 rs113670588 |
186 | L>P | No |
ClinGen Ensembl |
|
|
CA363242092 rs1554144787 |
189 | V>M | No |
ClinGen gnomAD |
|
|
rs558509966 CA3675485 |
191 | R>Q | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs781888378 CA3675484 |
191 | R>W | No |
ClinGen ExAC gnomAD |
|
|
CA363242109 rs1554144796 |
192 | G>E | No |
ClinGen gnomAD |
|
|
CA136328845 rs782771069 |
192 | G>R | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA3675486 rs568927550 |
193 | Q>K | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA3675487 rs781809303 |
195 | F>Y | No |
ClinGen ExAC |
|
|
CA3675488 rs782468756 |
196 | L>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3675489 rs782633323 |
197 | A>E | No |
ClinGen ExAC |
|
|
rs151288548 CA3675490 |
199 | D>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs782291202 CA363242174 |
202 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs782291202 CA3675494 |
202 | P>R | No |
ClinGen ExAC gnomAD |
|
|
CA363242180 rs1456193162 |
203 | A>V | No |
ClinGen TOPMed |
|
|
rs140562891 CA3675495 |
204 | R>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
COSM1181462 rs375548433 CA136328862 |
204 | R>H | large_intestine [Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD |
|
CA3675496 rs375548433 |
204 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1561910374 CA363242186 |
205 | P>S | No |
ClinGen Ensembl |
|
|
CA3675498 rs537569631 |
206 | D>H | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs367868700 CA3675499 |
208 | S>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1561910386 CA363242222 |
210 | T>I | No |
ClinGen Ensembl |
|
|
rs1266860681 COSM1697000 CA363242239 |
213 | Q>E | skin [Cosmic] | No |
ClinGen cosmic curated TOPMed |
|
rs1554144807 CA363242247 |
214 | R>C | No |
ClinGen gnomAD |
|
|
COSM1292269 rs371740280 CA3675500 |
214 | R>H | haematopoietic_and_lymphoid_tissue [Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD |
|
CA363242269 rs1554144809 |
217 | E>D | No |
ClinGen gnomAD |
|
|
rs781923627 CA3675502 |
219 | E>G | No |
ClinGen ExAC gnomAD |
|
|
CA3675503 rs375042007 |
220 | L>P | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1050530186 CA136328877 |
222 | A>G | No |
ClinGen gnomAD |
|
|
CA3675504 rs199766968 |
222 | A>T | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA136328879 rs889380574 |
223 | R>C | No |
ClinGen TOPMed gnomAD |
|
|
CA363242301 rs889380574 |
223 | R>G | No |
ClinGen TOPMed gnomAD |
|
|
CA363242302 rs1285767853 |
223 | R>H | No |
ClinGen TOPMed |
|
|
CA3675505 rs781840823 |
226 | A>S | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 226 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs150105438 CA136328883 |
227 | R>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP NCI-TCGA |
|
CA3675506 rs782519551 |
227 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs1561910420 CA363242332 |
228 | P>L | No |
ClinGen Ensembl |
|
| TCGA novel | 228 | P>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA3675509 rs782545015 |
228 | P>S | No |
ClinGen ExAC gnomAD |
|
|
CA3675510 rs574503291 |
229 | G>R | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
COSM595521 rs782192030 CA3675512 |
231 | R>C | lung Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
rs1554144814 CA363242346 |
231 | R>L | No |
ClinGen gnomAD |
|
|
CA363242354 rs1300147418 |
232 | E>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
rs1554144816 CA363242349 |
232 | E>K | No |
ClinGen gnomAD |
|
|
CA3675516 rs782467653 |
233 | R>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs782467653 CA363242359 |
233 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1554144819 CA363242358 |
233 | R>W | No |
ClinGen Ensembl |
|
|
CA363242361 rs138547122 |
234 | A>P | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA3675517 rs138547122 |
234 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA363242368 rs1554144825 |
235 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA136328900 rs897824993 |
235 | R>H | No |
ClinGen TOPMed gnomAD |
|
|
CA363242370 rs897824993 |
235 | R>L | No |
ClinGen TOPMed gnomAD |
|
|
rs782240371 CA3675518 |
236 | L>R | No |
ClinGen ExAC gnomAD |
|
|
CA3675519 rs782391830 |
237 | A>S | No |
ClinGen ExAC gnomAD |
|
|
rs782032402 CA3675520 |
238 | T>S | No |
ClinGen ExAC gnomAD |
|
|
CA363242403 rs1554144828 |
241 | D>G | No |
ClinGen gnomAD |
|
| TCGA novel | 242 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA3675521 rs782187306 |
244 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
COSM1181466 CA3675522 rs782331939 |
244 | R>H | large_intestine [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
rs782187306 CA363242422 |
244 | R>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3675523 rs781962034 |
245 | S>C | No |
ClinGen ExAC gnomAD |
|
|
rs782106092 CA3675524 |
246 | N>D | No |
ClinGen ExAC gnomAD |
|
|
rs1554144832 CA363242449 |
248 | G>V | No |
ClinGen gnomAD |
|
|
rs1554144833 CA363242452 |
249 | L>V | No |
ClinGen TOPMed |
|
|
CA3675526 rs554511936 |
251 | A>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1196984828 CA363242499 |
256 | A>D | No |
ClinGen TOPMed gnomAD |
|
|
CA363242500 rs1196984828 |
256 | A>G | No |
ClinGen TOPMed gnomAD |
|
|
CA363242506 rs782814898 |
257 | P>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA3675528 rs782814898 |
257 | P>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA363242509 rs1561910494 |
258 | P>S | No |
ClinGen Ensembl |
|
|
CA363242514 rs781785101 |
259 | P>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA363242517 rs1554144837 |
259 | P>L | No |
ClinGen gnomAD |
|
|
rs781785101 CA3675529 |
259 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs782728748 CA3675531 |
260 | S>L | No |
ClinGen ExAC gnomAD |
|
|
rs1554144840 CA363242532 |
262 | S>G | No |
ClinGen Ensembl |
|
|
rs1554144842 CA363242547 |
263 | M>I | No |
ClinGen gnomAD |
|
|
CA363242540 rs1554144841 |
263 | M>V | No |
ClinGen gnomAD |
|
|
rs1554144843 CA363242552 |
264 | E>V | No |
ClinGen gnomAD |
|
|
CA3675534 rs782639915 |
265 | G>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1554144844 CA363242559 |
265 | G>E | No |
ClinGen gnomAD |
|
|
CA363242558 rs782639915 |
265 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1230482183 CA363242564 |
266 | P>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1554144849 CA363242590 |
270 | R>T | No |
ClinGen gnomAD |
|
|
rs781905495 CA3675535 |
271 | D>E | No |
ClinGen ExAC gnomAD |
|
|
CA363242602 rs1554144850 |
272 | S>A | No |
ClinGen gnomAD |
|
|
CA3675536 rs782432875 |
273 | S>R | No |
ClinGen ExAC gnomAD |
|
|
CA3675537 rs782597707 |
273 | S>W | No |
ClinGen ExAC TOPMed gnomAD |
No associated diseases with Q9ULW3
1 regional properties for Q9ULW3
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| conserved_site | Aminoacyl-tRNA synthetase, class I, conserved site | 42 - 52 | IPR001412 |
3 GO annotations of cellular component
| Name | Definition |
|---|---|
| nucleolus | A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. |
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
| transcription regulator complex | A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription. |
3 GO annotations of molecular function
| Name | Definition |
|---|---|
| DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
| RNA binding | Binding to an RNA molecule or a portion thereof. |
| transcription coactivator activity | A transcription coregulator activity that activates or increases the transcription of specific gene sets via binding to a DNA-bound DNA-binding transcription factor, either on its own or as part of a complex. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coactivators modifies chromatin structure through covalent modification of histones. A second class remodels the conformation of chromatin in an ATP-dependent fashion. A third class modulates interactions of DNA-bound DNA-binding transcription factors with other transcription coregulators. A fourth class of coactivator activity is the bridging of a DNA-binding transcription factor to the general (basal) transcription machinery. The Mediator complex, which bridges sequence-specific DNA binding transcription factors and RNA polymerase, is also a transcription coactivator. |
7 GO annotations of biological process
| Name | Definition |
|---|---|
| endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Endonucleolytic cleavage within the 5'-External Transcribed Spacer (ETS) of a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, the 5.8S rRNA, and the Large Subunit (LSU) rRNA in that order from 5' to 3' along the primary transcript. Endonucleolytic cleavage within the 5'-ETS of the pre-RNA is conserved as one of the early steps of rRNA processing in all eukaryotes, but the specific position of cleavage is variable. |
| endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Endonucleolytic cleavage between the SSU-rRNA and the 5.8S rRNA of an rRNA molecule originally produced as a tricistronic rRNA transcript that contained the Small SubUnit (SSU) rRNA, the 5.8S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript. |
| endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Endonucleolytic cleavage between the 5'-External Transcribed Spacer (5'-ETS) and the 5' end of the SSU-rRNA of a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, the 5.8S rRNA, and the Large Subunit (LSU) rRNA in that order from 5' to 3' along the primary transcript, to produce the mature end of the SSU-rRNA. |
| regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. |
| small-subunit processome assembly | The aggregation, arrangement and bonding together of proteins and RNA molecules to form a small-subunit processome. |
| spinal cord motor neuron differentiation | The process in which neuroepithelial cells in the ventral neural tube acquire specialized structural and/or functional features of motor neurons. Motor neurons innervate an effector (muscle or glandular) tissue and are responsible for transmission of motor impulses from the brain to the periphery. Differentiation includes the processes involved in commitment of a cell to a specific fate. |
| transcription by RNA polymerase II | The synthesis of RNA from a DNA template by RNA polymerase II (RNAP II), originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). |
No homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| No homologous proteins | ||||
| 10 | 20 | 30 | 40 | 50 | 60 |
| MEAEESEKAA | TEQEPLEGTE | QTLDAEEEQE | ESEEAACGSK | KRVVPGIVYL | GHIPPRFRPL |
| 70 | 80 | 90 | 100 | 110 | 120 |
| HVRNLLSAYG | EVGRVFFQAE | DRFVRRKKKA | AAAAGGKKRS | YTKDYTEGWV | EFRDKRIAKR |
| 130 | 140 | 150 | 160 | 170 | 180 |
| VAASLHNTPM | GARRRSPFRY | DLWNLKYLHR | FTWSHLSEHL | AFERQVRRQR | LRAEVAQAKR |
| 190 | 200 | 210 | 220 | 230 | 240 |
| ETDFYLQSVE | RGQRFLAADG | DPARPDGSWT | FAQRPTEQEL | RARKAARPGG | RERARLATAQ |
| 250 | 260 | 270 | |||
| DKARSNKGLL | ARIFGAPPPS | ESMEGPSLVR | DS |