Q9UIS9
Gene name |
MBD1 |
Protein name |
Methyl-CpG-binding domain protein 1 |
Names |
CXXC-type zinc finger protein 3, Methyl-CpG-binding protein MBD1, Protein containing methyl-CpG-binding domain 1 |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:4152 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
458 variants for Q9UIS9
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
rs1568271857 CA402453498 |
2 | A>S | No |
ClinGen Ensembl |
|
|
rs957162342 CA300063728 |
4 | D>N | No |
ClinGen Ensembl |
|
|
rs1421476856 CA402453470 |
5 | W>* | No |
ClinGen gnomAD |
|
|
CA8963287 rs771034658 |
7 | D>G | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 8 | C>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA300063716 rs958981626 |
9 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
rs1382174417 CA402453442 |
10 | A>P | No |
ClinGen TOPMed |
|
|
CA300063707 rs1062703 |
13 | P>L | No |
ClinGen Ensembl |
|
|
CA402453402 rs1289005757 |
16 | K>R | No |
ClinGen gnomAD |
|
|
CA8963282 rs780072196 |
17 | R>H | No |
ClinGen ExAC gnomAD |
|
|
COSM988849 CA8963281 COSM988850 COSM1589478 rs755717520 COSM1589479 |
18 | R>H | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
CA402453383 rs1404610774 |
19 | E>D | No |
ClinGen gnomAD |
|
|
CA300063685 rs970888622 |
19 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs780948760 CA8963279 |
22 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA402453363 rs1324565569 |
22 | R>L | No |
ClinGen TOPMed |
|
| TCGA novel | 25 | G>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA300063659 rs1023377220 |
26 | A>D | No |
ClinGen Ensembl |
|
|
CA300063624 rs757273205 |
30 | R>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
|
CA8963276 rs764375971 |
30 | R>L | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 34 | Y>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 35 | Y>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| rs1460312558 | 37 | S>= | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs777362304 CA8963256 |
39 | T>R | No |
ClinGen ExAC gnomAD |
|
|
rs1338788920 CA402453232 |
41 | D>Y | No |
ClinGen gnomAD |
|
|
rs1429195882 CA402453222 |
42 | R>K | No |
ClinGen TOPMed gnomAD |
|
|
rs1488370302 CA402453210 |
44 | R>* | No |
ClinGen TOPMed |
|
|
rs1225085476 CA402453189 |
47 | V>I | No |
ClinGen TOPMed gnomAD |
|
|
CA402453164 rs1451633877 |
51 | R>* | No |
ClinGen gnomAD |
|
|
CA8963253 rs765771768 |
51 | R>Q | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 52 | Y>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 54 | G>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs149999887 CA300061784 |
55 | P>L | No |
ClinGen ESP |
|
|
CA8963251 rs754006655 |
56 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA402453108 rs1165667502 |
60 | T>A | Variant assessed as Somatic; 4.62e-05 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA8963249 rs760741225 |
60 | T>I | No |
ClinGen ExAC gnomAD |
|
|
CA300061768 rs140504319 |
67 | G>V | No |
ClinGen ESP TOPMed |
|
|
CA300061749 rs919882838 |
70 | C>G | No |
ClinGen TOPMed gnomAD |
|
|
rs1227685522 CA402453028 |
71 | Y>C | No |
ClinGen TOPMed |
|
|
CA402453030 rs1196461380 |
71 | Y>H | No |
ClinGen gnomAD |
|
|
CA402453010 rs1182748371 |
74 | P>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs1182748371 CA402453012 |
74 | P>T | No |
ClinGen TOPMed gnomAD |
|
|
rs1437485109 CA402453005 |
75 | K>E | No |
ClinGen gnomAD |
|
| TCGA novel | 76 | A>= | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8963230 rs767894080 |
77 | H>L | No |
ClinGen ExAC gnomAD |
|
|
CA8963231 rs200063969 |
77 | H>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs767894080 CA402452977 |
77 | H>R | No |
ClinGen ExAC gnomAD |
|
|
rs764959686 CA8963227 |
79 | V>A | No |
ClinGen ExAC gnomAD |
|
|
rs573633406 CA8963228 |
79 | V>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA8963226 rs759330460 |
80 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs770877581 CA300061615 |
81 | V>F | No |
ClinGen ExAC gnomAD |
|
|
rs770877581 CA8963224 |
81 | V>L | No |
ClinGen ExAC gnomAD |
|
|
rs746539791 CA8963223 |
84 | K>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 86 | R>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8963221 TCGA novel rs771769828 |
86 | R>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen ExAC gnomAD NCI-TCGA |
|
rs1480901303 CA402452919 |
87 | K>R | No |
ClinGen gnomAD |
|
|
COSM3719167 COSM3719169 COSM3719166 COSM3719168 CA300061598 rs926203824 |
89 | P>T | haematopoietic_and_lymphoid_tissue [Cosmic] | No |
ClinGen cosmic curated Ensembl |
|
CA402452899 rs1204829133 |
90 | S>P | No |
ClinGen TOPMed |
|
|
CA8963219 rs533821841 |
91 | R>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs755330575 CA8963218 |
94 | K>T | No |
ClinGen ExAC gnomAD |
|
|
CA8963216 rs780477740 |
96 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8963217 rs143587192 |
96 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA8963215 rs756616607 |
98 | R>C | No |
ClinGen ExAC gnomAD |
|
|
CA8963214 rs377403826 |
98 | R>H | No |
ClinGen ESP ExAC gnomAD |
|
| TCGA novel | 99 | Q>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA300061570 rs1039487143 |
100 | V>F | No |
ClinGen TOPMed gnomAD |
|
|
rs767695416 CA8963213 |
102 | P>L | No |
ClinGen ExAC |
|
|
rs1224916836 CA402452814 |
104 | S>I | No |
ClinGen gnomAD |
|
|
CA402452809 rs1187932924 |
105 | G>S | No |
ClinGen TOPMed |
|
|
rs374266416 CA8963212 |
106 | E>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8963211 rs140046193 |
110 | E>A | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs146267961 CA8963210 |
112 | P>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs1568247196 CA402452746 |
114 | D>G | No |
ClinGen Ensembl |
|
|
CA8963208 rs201327689 |
117 | K>M | No |
ClinGen 1000Genomes ExAC |
|
|
CA300061549 rs201327689 |
117 | K>R | No |
ClinGen 1000Genomes ExAC |
|
|
rs77245079 CA300061540 |
118 | A>P | No |
ClinGen Ensembl |
|
|
CA300061507 rs929862724 |
120 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
CA300061511 rs560964317 |
120 | T>P | No |
ClinGen Ensembl |
|
|
CA8963206 rs760590545 |
121 | D>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs773074278 CA8963205 |
122 | T>I | No |
ClinGen ExAC gnomAD |
|
|
rs1428858509 CA402452690 |
123 | A>D | No |
ClinGen gnomAD |
|
| TCGA novel | 123 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 125 | A>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs113359870 CA300061454 |
127 | F>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs761273021 CA8963203 |
129 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA402452618 rs1334926590 |
133 | C>R | No |
ClinGen gnomAD |
|
|
rs114907308 CA402452597 |
135 | N>K | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA402452571 rs1278482665 |
139 | S>N | No |
ClinGen TOPMed |
|
|
CA402452556 rs1440218323 |
141 | S>A | No |
ClinGen TOPMed |
|
|
rs1040911984 CA300061350 |
142 | G>R | No |
ClinGen TOPMed |
|
|
CA402452552 rs1040911984 |
142 | G>W | No |
ClinGen TOPMed |
|
|
CA300061347 rs960797759 |
143 | D>A | No |
ClinGen TOPMed |
|
|
rs1448494911 CA402452545 |
143 | D>H | No |
ClinGen TOPMed |
|
|
CA402452540 rs1169843234 |
144 | G>S | No |
ClinGen TOPMed gnomAD |
|
|
CA402452533 rs1478338986 |
145 | T>A | No |
ClinGen TOPMed |
|
|
CA8963187 rs750392624 |
146 | Q>E | No |
ClinGen ExAC gnomAD |
|
|
CA8963184 rs148657100 |
149 | R>W | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA8963181 rs144054828 |
150 | L>F | No |
ClinGen ESP ExAC gnomAD |
|
|
CA8963180 rs770291620 |
150 | L>P | No |
ClinGen ExAC gnomAD |
|
|
COSM1480363 rs545375854 CA8963178 COSM438187 COSM1480364 COSM438186 |
152 | T>M | Variant assessed as Somatic; 0.0 impact. breast [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
| TCGA novel | 152 | T>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA402452482 rs1247393791 |
153 | L>S | No |
ClinGen gnomAD |
|
| TCGA novel | 155 | K>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8963174 rs758351481 |
158 | R>* | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA8963173 rs369277602 |
158 | R>P | No |
ClinGen ESP ExAC gnomAD |
|
|
CA402452444 rs369277602 |
158 | R>Q | No |
ClinGen ESP ExAC gnomAD |
|
|
CA402452418 rs1156927885 |
160 | Q>H | No |
ClinGen TOPMed |
|
|
CA8963150 rs780955049 |
160 | Q>K | No |
ClinGen ExAC gnomAD |
|
|
rs751523144 CA8963148 |
163 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA402452385 rs1568241562 |
165 | N>S | No |
ClinGen Ensembl |
|
|
CA300061088 rs897086935 |
166 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
COSM1388990 COSM1388988 COSM1388991 COSM1388989 CA402452380 rs1364072665 |
166 | R>W | large_intestine Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA TOPMed |
|
rs373094921 CA8963146 |
171 | F>Y | No |
ClinGen ESP ExAC gnomAD |
|
|
rs1462113864 CA402452316 |
173 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA8963127 rs764846859 |
173 | R>H | No |
ClinGen ExAC gnomAD |
|
|
CA402452309 rs1197926925 |
174 | V>A | No |
ClinGen TOPMed |
|
| TCGA novel | 175 | G>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA402452292 COSM1611270 COSM1611268 COSM1611271 rs1254534929 COSM1611269 |
177 | G>R | liver [Cosmic] | No |
ClinGen cosmic curated TOPMed |
|
rs1446793297 CA402452286 |
178 | E>K | No |
ClinGen gnomAD |
|
|
CA8963124 rs116398989 |
180 | A>V | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs761140878 CA8963123 |
181 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs1568237541 CA402452249 |
183 | Q>R | No |
ClinGen Ensembl |
|
|
CA402452238 rs1165284679 |
185 | T>A | No |
ClinGen TOPMed |
|
|
CA8963121 rs367740776 |
187 | D>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1273798331 CA402452217 |
188 | C>R | No |
ClinGen gnomAD |
|
| TCGA novel | 188 | C>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 190 | A>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs768733963 CA8963118 |
190 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs1599424737 CA402452185 |
193 | T>P | No |
ClinGen Ensembl |
|
|
CA402452156 rs1446749423 |
197 | Q>R | No |
ClinGen gnomAD |
|
| TCGA novel | 200 | H>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA402452128 rs1338333826 |
201 | D>V | No |
ClinGen gnomAD |
|
|
rs1391447151 CA402452108 |
204 | S>L | No |
ClinGen TOPMed gnomAD |
|
|
CA402452088 rs746884129 |
208 | C>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8963114 rs746884129 |
208 | C>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8963112 rs771836383 |
212 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8963113 rs777428957 |
212 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs1234802318 CA402452045 COSM1480361 COSM1480362 COSM438184 COSM438185 |
214 | R>C | Variant assessed as Somatic; 0.0 impact. breast [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
rs748112107 CA8963111 |
214 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA402452027 rs1230209084 |
217 | R>Q | No |
ClinGen TOPMed |
|
|
CA300060738 rs867327108 |
217 | R>W | No |
ClinGen Ensembl |
|
|
CA300060730 rs1057340110 |
220 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs1361511129 CA402452003 |
221 | R>G | No |
ClinGen gnomAD |
|
|
rs1328048386 CA402451981 |
222 | S>N | No |
ClinGen gnomAD |
|
|
rs759684535 CA8963095 |
223 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA402451967 rs1355770524 |
225 | C>R | No |
ClinGen gnomAD |
|
| TCGA novel | 226 | G>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8963094 rs776857176 |
227 | V>I | No |
ClinGen ExAC gnomAD |
|
|
rs747913320 CA8963092 |
229 | R>Q | No |
ClinGen ExAC TOPMed |
|
|
CA8963093 rs771787035 COSM294549 |
229 | R>W | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
rs779034269 CA8963091 |
230 | G>A | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 234 | Q>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 235 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs369762167 CA8963090 |
235 | E>K | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 237 | C>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8963087 rs755582164 |
241 | P>A | No |
ClinGen ExAC gnomAD |
|
|
CA8963086 rs750055363 |
241 | P>H | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 242 | I>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1424593931 CA402451853 |
242 | I>V | No |
ClinGen gnomAD |
|
|
rs780846145 CA402451839 |
244 | L>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8963085 rs780846145 |
244 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1166108651 CA402451832 |
245 | R>C | No |
ClinGen TOPMed |
|
|
rs559798763 CA300060517 |
245 | R>H | No |
ClinGen gnomAD |
|
|
rs1416246128 CA402451825 |
246 | P>L | No |
ClinGen TOPMed |
|
|
CA8963084 rs757645619 |
246 | P>S | No |
ClinGen ExAC gnomAD |
|
|
COSM266904 rs751885186 CA402451817 |
248 | R>C | large_intestine Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA8963083 rs751885186 |
248 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8963082 rs376154307 |
248 | R>H | Variant assessed as Somatic; 4.624e-05 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA402451818 rs751885186 |
248 | R>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA402451812 rs1323017451 |
249 | P>S | No |
ClinGen TOPMed |
|
|
CA402451806 rs1366420659 |
250 | G>C | No |
ClinGen TOPMed |
|
|
rs758905952 CA8963081 |
250 | G>D | No |
ClinGen ExAC gnomAD |
|
|
CA8963080 rs137981167 |
251 | L>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1428545515 CA402451789 |
253 | R>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA8963078 rs759614155 |
253 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
| TCGA novel | 257 | C>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA402451737 rs1271347221 |
260 | R>Q | No |
ClinGen gnomAD |
|
|
CA300060504 rs946788372 |
261 | R>C | No |
ClinGen TOPMed |
|
|
CA8963073 rs768780488 |
264 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs147388785 CA8963074 |
264 | R>W | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1050825468 CA300060157 |
265 | G>D | No |
ClinGen Ensembl |
|
|
CA8963002 rs368737381 |
265 | G>S | No |
ClinGen ESP ExAC |
|
|
rs757230092 CA8963001 |
267 | H>D | No |
ClinGen ExAC |
|
| TCGA novel | 268 | A>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs868022404 CA300060155 |
268 | A>V | No |
ClinGen Ensembl |
|
|
CA8962999 rs374903967 |
269 | R>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs754846005 CA8962998 |
269 | R>H | No |
ClinGen ExAC gnomAD |
|
|
CA8962996 rs573408638 |
270 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
CA8962997 rs573408638 |
270 | R>G | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA8962994 rs750294772 |
270 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs750294772 CA8962995 |
270 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA402451520 rs1279163359 |
271 | K>R | No |
ClinGen gnomAD |
|
|
rs767068057 CA8962993 |
272 | G>A | No |
ClinGen ExAC gnomAD |
|
|
CA8962992 rs761177845 |
274 | C>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA402451469 rs1394915033 |
278 | M>I | No |
ClinGen gnomAD |
|
|
CA8962991 rs142689070 |
278 | M>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1214880808 CA402451463 |
279 | A>V | No |
ClinGen TOPMed |
|
|
rs763620378 CA8962990 |
281 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8962988 rs371373568 |
282 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
CA8962989 rs763457177 |
282 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs770486019 CA8962987 |
283 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs746395056 CA8962986 |
283 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8962985 rs776958255 |
284 | P>R | No |
ClinGen ExAC gnomAD |
|
|
CA402451441 rs1203312724 |
284 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
rs1440729879 CA402451437 |
285 | G>R | No |
ClinGen gnomAD |
|
|
rs754514182 CA300060095 |
286 | A>T | No |
ClinGen gnomAD |
|
| TCGA novel | 288 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8962980 rs749148492 |
289 | L>V | No |
ClinGen ExAC |
|
|
rs1427232385 CA402451398 |
291 | P>L | No |
ClinGen TOPMed |
|
|
CA300060047 rs541228622 |
292 | P>Q | No |
ClinGen Ensembl |
|
|
CA8962979 rs779830327 |
292 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs755845503 CA8962978 |
293 | P>T | No |
ClinGen ExAC gnomAD |
|
|
rs767316018 CA8962976 |
294 | P>A | No |
ClinGen ExAC gnomAD |
|
|
CA402451386 rs1173827934 |
294 | P>Q | No |
ClinGen TOPMed |
|
|
CA402451378 rs1359239944 |
295 | S>L | No |
ClinGen gnomAD |
|
|
CA402451383 rs1390301385 |
295 | S>P | No |
ClinGen TOPMed |
|
|
rs751008126 CA8962974 |
297 | S>F | No |
ClinGen ExAC gnomAD |
|
|
rs372758945 CA8962973 |
299 | E>Q | No |
ClinGen ESP ExAC gnomAD |
|
|
CA8962972 rs762686361 |
301 | T>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1391938551 CA402451338 |
302 | E>* | No |
ClinGen TOPMed gnomAD |
|
|
rs1391938551 CA402451339 |
302 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
rs1391938551 CA402451340 |
302 | E>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA402451335 rs1359842021 |
302 | E>V | No |
ClinGen TOPMed |
|
| rs759943579 | 303 | P>= | Variant assessed as Somatic; 4.64e-05 impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8962970 rs115426299 COSM709406 COSM1148000 COSM1147999 COSM709407 |
303 | P>L | lung Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
rs369549163 CA402451331 |
303 | P>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs369549163 CA8962971 |
303 | P>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA402451313 rs751145133 |
304 | H>P | No |
ClinGen ExAC gnomAD |
|
|
CA8962956 rs751145133 |
304 | H>R | No |
ClinGen ExAC gnomAD |
|
|
rs1196644177 CA402451295 |
307 | A>P | No |
ClinGen TOPMed |
|
|
rs891299327 CA300059870 |
308 | L>P | No |
ClinGen gnomAD |
|
|
rs891299327 CA300059859 |
308 | L>Q | No |
ClinGen gnomAD |
|
|
rs1050857509 CA402451285 |
309 | A>D | No |
ClinGen Ensembl |
|
|
CA300059838 rs1050857509 |
309 | A>G | No |
ClinGen Ensembl |
|
|
CA8962954 rs757936188 |
309 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs1175709915 CA402451278 |
310 | P>L | No |
ClinGen gnomAD |
|
|
CA8962953 rs752431743 |
311 | S>L | No |
ClinGen ExAC gnomAD |
|
|
CA300059834 rs996989583 |
312 | P>L | No |
ClinGen Ensembl |
|
|
CA402451270 rs1197884906 |
312 | P>S | No |
ClinGen gnomAD |
|
|
rs1400907351 CA402451262 |
313 | P>L | No |
ClinGen TOPMed |
|
|
CA8962950 rs142015383 |
315 | E>K | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs766976488 CA8962949 |
317 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1221372750 CA402451230 |
318 | Y>C | No |
ClinGen gnomAD |
|
|
rs946364427 CA300059819 |
319 | Y>H | No |
ClinGen Ensembl |
|
|
CA402451215 rs1368914207 |
320 | C>Y | No |
ClinGen gnomAD |
|
|
rs772160400 CA8962946 |
322 | D>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8962948 rs761092389 |
322 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8962945 rs761839271 |
323 | E>D | No |
ClinGen ExAC |
|
|
rs1321409301 CA402451182 |
325 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA402451158 rs1483267706 |
327 | Q>E | No |
ClinGen gnomAD |
|
|
rs1300835464 CA402451141 |
329 | Y>S | No |
ClinGen TOPMed |
|
|
CA8962924 rs764362213 |
330 | T>M | No |
ClinGen ExAC gnomAD |
|
|
CA8962923 rs763087779 |
331 | N>S | No |
ClinGen ExAC gnomAD |
|
|
rs763087779 CA402451127 |
331 | N>T | No |
ClinGen ExAC gnomAD |
|
|
CA8962921 rs201274000 |
332 | R>H | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA8962922 rs775721336 |
332 | R>S | No |
ClinGen ExAC gnomAD |
|
|
rs1228094438 CA402451118 |
333 | R>Q | No |
ClinGen gnomAD |
|
|
CA402451119 rs1568218353 |
333 | R>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
|
rs746790409 CA8962920 |
334 | Q>R | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 335 | N>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1315055454 CA402451100 |
336 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
| TCGA novel | 336 | R>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs773336559 CA8962919 |
338 | C>Y | No |
ClinGen ExAC gnomAD |
|
|
CA402451079 rs1282509795 |
339 | G>R | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs747729261 CA8962917 |
340 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA402451067 rs1308612529 |
341 | C>R | No |
ClinGen gnomAD |
|
|
CA8962916 rs778570608 |
341 | C>Y | No |
ClinGen ExAC gnomAD |
|
|
COSM1388978 rs1157454060 COSM1388979 COSM1388977 COSM1388980 CA402451033 |
346 | R>Q | large_intestine Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
|
rs1568217739 CA402451035 |
346 | R>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
|
CA402451029 rs1414852111 |
347 | R>Q | No |
ClinGen gnomAD |
|
|
CA402451030 rs1425761643 |
347 | R>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs1599355218 CA402451026 |
348 | M>V | No |
ClinGen Ensembl |
|
|
rs1599355113 CA402451002 |
350 | C>W | No |
ClinGen Ensembl |
|
|
CA402450993 rs1424033110 |
352 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA8962913 rs747759305 |
352 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA402450991 rs747759305 |
352 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA402450979 rs1599354700 |
354 | D>G | No |
ClinGen Ensembl |
|
| TCGA novel | 355 | F>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 359 | K>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA402450932 rs1205111303 |
360 | P>S | No |
ClinGen gnomAD |
|
| TCGA novel | 367 | Q>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 372 | C>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1267624212 CA402450837 |
373 | R>G | No |
ClinGen gnomAD |
|
|
rs867849767 COSM1750540 COSM1750539 COSM1750537 CA300059118 COSM1750538 |
375 | R>H | Variant assessed as Somatic; impact. urinary_tract [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated Ensembl NCI-TCGA |
|
rs1271572155 CA402450775 CA402450773 |
382 | M>L | No |
ClinGen gnomAD |
|
|
rs751993119 CA8962908 |
382 | M>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1271572155 CA402450774 |
382 | M>V | No |
ClinGen gnomAD |
|
|
CA402450744 rs1451074062 |
384 | R>P | No |
ClinGen gnomAD |
|
|
CA402450745 rs1451074062 |
384 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
| TCGA novel | 384 | R>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8962893 rs781537255 |
386 | L>V | No |
ClinGen ExAC gnomAD |
|
|
CA402450726 rs1454862413 |
388 | S>G | No |
ClinGen TOPMed |
|
|
CA402450716 rs1251546379 |
389 | V>A | No |
ClinGen gnomAD |
|
|
CA8962891 rs752079718 |
389 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1190693465 CA402450711 |
390 | W>* | No |
ClinGen gnomAD |
|
| TCGA novel | 390 | W>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8962890 rs764634794 |
391 | S>L | No |
ClinGen ExAC gnomAD |
|
|
CA402450670 rs1274467881 |
396 | G>R | No |
ClinGen TOPMed |
|
|
CA402450663 rs1233905710 |
397 | A>S | No |
ClinGen gnomAD |
|
|
rs759810015 CA8962886 |
398 | G>V | No |
ClinGen ExAC gnomAD |
|
|
CA8962885 rs754056527 |
399 | S>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs125555 CA8962881 VAR_019513 |
401 | P>A | No |
ClinGen UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
| TCGA novel | 401 | P>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs125555 CA8962882 |
401 | P>S | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 402 | P>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8962880 rs762428686 |
402 | P>S | No |
ClinGen ExAC gnomAD |
|
|
CA300058847 rs989610523 |
403 | Y>C | No |
ClinGen Ensembl |
|
|
CA402450624 rs1303887673 |
404 | R>C | No |
ClinGen gnomAD |
|
|
COSM75373 CA8962878 rs769115388 |
404 | R>H | ovary Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
rs550750190 CA8962877 |
405 | R>C | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs537245589 CA8962876 |
405 | R>H | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs771313933 CA8962875 COSM211971 |
406 | R>* | Variant assessed as Somatic; 0.0 impact. large_intestine breast [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA |
|
CA8962874 rs368378616 |
406 | R>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8962873 rs778203715 |
409 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs970396739 CA300058841 |
409 | P>S | No |
ClinGen Ensembl |
|
|
CA402450576 rs1389747519 |
412 | A>V | No |
ClinGen gnomAD |
|
|
COSM3378514 CA300058834 COSM3378512 rs1023314200 COSM3378513 COSM3378515 |
413 | R>* | pancreas [Cosmic] | No |
ClinGen cosmic curated Ensembl |
|
CA8962872 rs145074114 |
413 | R>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8962870 rs779064515 |
414 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs753082327 CA8962871 |
414 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA300058794 rs1050227870 |
416 | H>L | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 417 | L>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1485303730 CA402450545 |
418 | G>D | No |
ClinGen TOPMed gnomAD |
|
|
CA300058786 rs963331262 |
418 | G>S | No |
ClinGen Ensembl |
|
|
rs1485303730 CA402450544 |
418 | G>V | No |
ClinGen TOPMed gnomAD |
|
|
CA8962869 rs755061068 |
419 | P>A | No |
ClinGen ExAC gnomAD |
|
|
CA402450537 rs1342663698 |
420 | T>A | No |
ClinGen gnomAD |
|
|
rs767252581 CA8962868 |
421 | L>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1272392126 CA402450525 |
422 | K>E | No |
ClinGen TOPMed |
|
|
CA8962867 rs766678613 |
423 | P>S | No |
ClinGen ExAC gnomAD |
|
|
CA402450517 rs766678613 |
423 | P>T | No |
ClinGen ExAC gnomAD |
|
|
rs751353744 CA8962865 |
424 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8962862 rs775229161 |
428 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs141197289 CA8962861 |
428 | R>H | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs998255464 CA300058717 |
432 | P>S | No |
ClinGen gnomAD |
|
|
rs776317005 CA8962859 |
434 | H>R | No |
ClinGen ExAC gnomAD |
|
|
CA8962858 rs116201949 |
435 | T>I | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA402450442 rs116201949 |
435 | T>N | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs747444402 CA8962857 |
436 | Q>L | No |
ClinGen ExAC gnomAD |
|
|
CA300058668 rs778208215 |
437 | A>S | No |
ClinGen ExAC gnomAD |
|
|
CA8962856 rs778208215 |
437 | A>T | No |
ClinGen ExAC gnomAD |
|
|
CA8962854 rs748711867 |
439 | T>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
| TCGA novel | 440 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1358011052 CA402450394 |
443 | A>T | No |
ClinGen gnomAD |
|
|
rs1232115248 CA402450385 |
444 | G>D | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA402450387 rs1265712725 |
444 | G>S | No |
ClinGen TOPMed gnomAD |
|
|
CA8962853 rs779250333 |
448 | V>M | No |
ClinGen ExAC gnomAD |
|
|
CA300058658 rs868020279 |
449 | L>P | No |
ClinGen Ensembl |
|
|
rs1290698017 CA402450350 |
450 | P>H | No |
ClinGen gnomAD |
|
|
CA402450342 rs1335472127 |
451 | P>L | No |
ClinGen gnomAD |
|
|
CA8962850 rs780479713 |
454 | T>I | No |
ClinGen ExAC gnomAD |
|
|
rs915503821 CA402450315 |
456 | L>F | No |
ClinGen gnomAD |
|
|
CA300058649 rs909219784 |
456 | L>P | No |
ClinGen TOPMed |
|
|
rs915503821 CA300058654 |
456 | L>V | No |
ClinGen gnomAD |
|
|
CA8962849 rs756399728 |
460 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
rs1164534782 CA402450290 |
460 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
| TCGA novel | 461 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA300058625 rs763959325 |
463 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8962847 rs763959325 |
463 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1232300239 CA402450265 |
464 | S>T | No |
ClinGen gnomAD |
|
|
CA402450257 rs1179367370 |
465 | S>N | No |
ClinGen gnomAD |
|
|
rs1453152099 CA402450251 |
466 | P>S | No |
ClinGen TOPMed gnomAD |
|
|
CA402450247 rs1267560891 |
467 | V>M | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 469 | V>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
COSM124344 CA8962845 rs199727558 |
470 | P>L | upper_aerodigestive_tract Variant assessed as Somatic; 4.816e-05 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
CA402450212 rs1228540045 |
472 | P>R | No |
ClinGen gnomAD |
|
|
CA8962843 rs759106550 |
473 | V>F | No |
ClinGen ExAC gnomAD |
|
|
rs532625467 CA8962842 |
474 | A>G | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs982217875 CA300058601 |
474 | A>T | No |
ClinGen Ensembl |
|
|
rs765812620 CA8962841 |
475 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs1342630411 CA402450186 |
477 | T>R | No |
ClinGen TOPMed |
|
|
rs188849693 CA8962839 |
479 | A>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1390841969 CA402450158 |
482 | Q>E | No |
ClinGen gnomAD |
|
|
CA402450159 rs1390841969 |
482 | Q>K | No |
ClinGen gnomAD |
|
|
CA402450155 rs1216045290 |
482 | Q>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
CA402450131 rs1433483151 |
484 | A>T | No |
ClinGen gnomAD |
|
|
rs1212776261 CA402450104 |
487 | S>C | No |
ClinGen gnomAD |
|
|
rs1280314990 CA402450099 |
488 | G>A | No |
ClinGen gnomAD |
|
|
rs769074844 CA8962818 |
489 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 490 | S>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA402450090 rs1344793294 |
490 | S>T | No |
ClinGen gnomAD |
|
|
rs368314286 CA300058464 |
491 | W>* | No |
ClinGen Ensembl |
|
|
CA300058469 rs997325222 |
491 | W>G | No |
ClinGen Ensembl |
|
|
rs1296503715 CA402450068 |
493 | V>G | No |
ClinGen gnomAD |
|
|
CA300058456 rs774182305 |
493 | V>M | No |
ClinGen Ensembl |
|
|
CA8962817 rs749825342 |
494 | A>P | No |
ClinGen ExAC gnomAD |
|
|
rs776086555 CA8962816 |
495 | L>S | No |
ClinGen ExAC gnomAD |
|
|
rs370432566 CA8962815 |
497 | Q>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8962814 rs745902552 |
500 | Q>R | No |
ClinGen ExAC gnomAD |
|
|
rs781524277 CA8962813 |
502 | K>T | No |
ClinGen ExAC gnomAD |
|
|
CA300058440 rs555450900 |
503 | A>E | No |
ClinGen gnomAD |
|
|
CA402450002 rs555450900 |
503 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA402450001 rs1432590038 |
504 | D>N | No |
ClinGen gnomAD |
|
|
CA8962812 rs775773697 |
505 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 506 | Q>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1568207054 CA402449984 |
506 | Q>R | No |
ClinGen Ensembl |
|
|
rs765756480 CA8962810 CA402449974 |
507 | D>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA402449973 rs1409016336 |
508 | E>K | No |
ClinGen gnomAD |
|
|
rs1409016336 CA402449972 |
508 | E>Q | No |
ClinGen gnomAD |
|
|
rs1267905748 CA402449964 |
509 | W>R | No |
ClinGen TOPMed gnomAD |
|
|
rs376324401 CA8962809 |
511 | P>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8962808 rs753804798 |
512 | G>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs1186450265 CA402449927 |
515 | V>L | No |
ClinGen TOPMed gnomAD |
|
|
rs1040158568 CA300058380 |
518 | S>F | No |
ClinGen gnomAD |
|
|
rs1040158568 CA300058372 |
518 | S>Y | No |
ClinGen gnomAD |
|
|
CA8962804 rs767264726 COSM988828 COSM1589492 |
520 | V>I | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
rs1329067416 CA402449878 |
523 | P>L | No |
ClinGen TOPMed |
|
|
rs1049536964 CA300058346 |
524 | G>D | No |
ClinGen TOPMed |
|
|
rs201485722 CA402449868 |
525 | C>F | No |
ClinGen TOPMed gnomAD |
|
|
rs201485722 CA300058337 |
525 | C>Y | No |
ClinGen TOPMed gnomAD |
|
|
CA8962803 rs761374455 |
527 | S>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA402449822 rs1246971007 |
530 | V>A | No |
ClinGen TOPMed |
|
| TCGA novel | 530 | V>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA402449819 rs1487941803 |
531 | D>H | No |
ClinGen TOPMed |
|
|
rs1314841235 CA402449809 |
532 | P>R | No |
ClinGen TOPMed gnomAD |
|
|
rs569680369 CA8962775 |
532 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8962772 rs183403566 |
535 | P>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs760715031 CA8962773 |
535 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs772270619 CA8962771 |
536 | S>F | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 543 | D>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs779715527 CA8962769 |
544 | P>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs779715527 CA402449737 |
544 | P>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1045816095 CA300056036 COSM54434 |
548 | K>N | central_nervous_system [Cosmic] | No |
ClinGen cosmic curated TOPMed |
|
rs756757690 CA8962765 |
549 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs1429136610 CA402449682 |
551 | N>S | No |
ClinGen gnomAD |
|
|
CA8962762 rs758130401 |
552 | K>E | No |
ClinGen ExAC gnomAD |
|
|
CA8962761 rs200561867 |
552 | K>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1211289870 CA402449645 |
556 | A>V | No |
ClinGen gnomAD |
|
|
rs1300739930 CA402449640 |
557 | S>C | No |
ClinGen gnomAD |
|
|
CA8962759 rs755329795 |
558 | K>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs936265181 CA300055968 |
559 | L>S | No |
ClinGen TOPMed gnomAD |
|
|
rs867006718 CA300055963 |
560 | A>V | No |
ClinGen Ensembl |
|
|
rs78525701 CA8962757 |
561 | P>A | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA8962756 rs760805097 |
562 | E>D | No |
ClinGen ExAC gnomAD |
|
|
rs1314066790 CA402449596 |
564 | E>G | No |
ClinGen gnomAD |
|
|
CA8962755 rs767516740 |
568 | A>D | No |
ClinGen ExAC gnomAD |
|
|
CA402449573 rs1374052903 |
568 | A>P | No |
ClinGen gnomAD |
|
|
CA8962754 rs767516740 |
568 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs762033295 CA8962753 |
569 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 569 | G>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA402449564 rs1599298902 |
570 | T>P | No |
ClinGen Ensembl |
|
|
rs769503747 CA8962751 |
572 | V>M | No |
ClinGen ExAC gnomAD |
|
|
rs1568199630 CA402449532 |
573 | I>T | No |
ClinGen Ensembl |
|
| TCGA novel | 575 | E>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1183700938 CA402449516 |
575 | E>D | No |
ClinGen gnomAD |
|
|
CA402449478 rs1318126903 |
581 | G>E | No |
ClinGen TOPMed |
|
|
CA8962730 rs776479957 |
582 | T>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1273262892 CA402449472 |
582 | T>S | No |
ClinGen gnomAD |
|
|
rs1232210734 CA402449468 |
583 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs1232210734 CA402449469 |
583 | R>G | No |
ClinGen TOPMed gnomAD |
|
|
rs1333308271 CA402449467 |
583 | R>H | No |
ClinGen TOPMed gnomAD |
|
|
CA8962729 rs770780405 |
584 | F>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs539780746 CA402449457 |
585 | R>* | No |
ClinGen TOPMed gnomAD |
|
|
CA300055788 rs539780746 |
585 | R>G | No |
ClinGen TOPMed gnomAD |
|
|
CA8962728 rs147372202 |
585 | R>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA8962727 rs147372202 |
585 | R>Q | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA8962725 rs747675537 |
587 | T>I | No |
ClinGen ExAC gnomAD |
|
|
rs771748932 CA8962726 |
587 | T>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1426108667 CA402449440 |
588 | A>G | No |
ClinGen TOPMed |
No associated diseases with Q9UIS9
4 regional properties for Q9UIS9
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | Methyl-CpG DNA binding | 1 - 76 | IPR001739 |
| domain | Zinc finger, CXXC-type | 169 - 216 | IPR002857-1 |
| domain | Zinc finger, CXXC-type | 217 - 263 | IPR002857-2 |
| domain | Zinc finger, CXXC-type | 330 - 378 | IPR002857-3 |
Functions
5 GO annotations of cellular component
| Name | Definition |
|---|---|
| chromosome | A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. |
| nuclear matrix | The dense fibrillar network lying on the inner side of the nuclear membrane. |
| nuclear speck | A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy. |
| nucleoplasm | That part of the nuclear content other than the chromosomes or the nucleolus. |
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
5 GO annotations of molecular function
| Name | Definition |
|---|---|
| DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
| double-stranded methylated DNA binding | Binding to double-stranded methylated DNA. Methylation of cytosine or adenine in DNA is an important mechanism for establishing stable heritable epigenetic marks. |
| methyl-CpG binding | Binding to a methylated cytosine/guanine dinucleotide. |
| unmethylated CpG binding | Binding to uan nmethylated CpG motif. Unmethylated CpG dinucleotides are often associated with gene promoters. |
| zinc ion binding | Binding to a zinc ion (Zn). |
2 GO annotations of biological process
| Name | Definition |
|---|---|
| negative regulation of DNA-templated transcription | Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription. |
| transcription by RNA polymerase II | The synthesis of RNA from a DNA template by RNA polymerase II (RNAP II), originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). |
No homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| No homologous proteins | ||||
| 10 | 20 | 30 | 40 | 50 | 60 |
| MAEDWLDCPA | LGPGWKRREV | FRKSGATCGR | SDTYYQSPTG | DRIRSKVELT | RYLGPACDLT |
| 70 | 80 | 90 | 100 | 110 | 120 |
| LFDFKQGILC | YPAPKAHPVA | VASKKRKKPS | RPAKTRKRQV | GPQSGEVRKE | APRDETKADT |
| 130 | 140 | 150 | 160 | 170 | 180 |
| DTAPASFPAP | GCCENCGISF | SGDGTQRQRL | KTLCKDCRAQ | RIAFNREQRM | FKRVGCGECA |
| 190 | 200 | 210 | 220 | 230 | 240 |
| ACQVTEDCGA | CSTCLLQLPH | DVASGLFCKC | ERRRCLRIVE | RSRGCGVCRG | CQTQEDCGHC |
| 250 | 260 | 270 | 280 | 290 | 300 |
| PICLRPPRPG | LRRQWKCVQR | RCLRGKHARR | KGGCDSKMAA | RRRPGAQPLP | PPPPSQSPEP |
| 310 | 320 | 330 | 340 | 350 | 360 |
| TEPHPRALAP | SPPAEFIYYC | VDEDELQPYT | NRRQNRKCGA | CAACLRRMDC | GRCDFCCDKP |
| 370 | 380 | 390 | 400 | 410 | 420 |
| KFGGSNQKRQ | KCRWRQCLQF | AMKRLLPSVW | SESEDGAGSP | PPYRRRKRPS | SARRHHLGPT |
| 430 | 440 | 450 | 460 | 470 | 480 |
| LKPTLATRTA | QPDHTQAPTK | QEAGGGFVLP | PPGTDLVFLR | EGASSPVQVP | GPVAASTEAL |
| 490 | 500 | 510 | 520 | 530 | 540 |
| LQEAQCSGLS | WVVALPQVKQ | EKADTQDEWT | PGTAVLTSPV | LVPGCPSKAV | DPGLPSVKQE |
| 550 | 560 | 570 | 580 | 590 | 600 |
| PPDPEEDKEE | NKDDSASKLA | PEEEAGGAGT | PVITEIFSLG | GTRFRDTAVW | LPRSKDLKKP |
| GARKQ |