Q9SL04
Gene name |
ATG8D (APG8D, At2g05630, T20G20.2) |
Protein name |
Autophagy-related protein 8d |
Names |
Autophagy-related ubiquitin-like modifier ATG8d, AtAPG8d, Protein autophagy 8d |
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT2G05630 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q9SL04
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q9SL04-F1 | Predicted | AlphaFoldDB |
6 variants for Q9SL04
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| ENSVATH11363748 | 7 | K>E | No | 1000Genomes | |
| tmp_2_2083775_G_A | 43 | P>S | No | 1000Genomes | |
| ENSVATH01657096 | 47 | R>K | No | 1000Genomes | |
| ENSVATH11363313 | 93 | S>Y | No | 1000Genomes | |
| tmp_2_2083267_C_A | 103 | D>Y | No | 1000Genomes | |
| tmp_2_2083218_A_G | 119 | F>S | No | 1000Genomes |
No associated diseases with Q9SL04
1 regional properties for Q9SL04
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | ATP25 mRNA stabilisation domain | 305 - 594 | IPR025210 |
3 GO annotations of cellular component
| Name | Definition |
|---|---|
| autophagosome membrane | The lipid bilayer surrounding an autophagosome, a double-membrane-bounded vesicle in which endogenous cellular material is sequestered. |
| cytoplasmic vesicle | A vesicle found in the cytoplasm of a cell. |
| microtubule | Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. |
No GO annotations of molecular function
| Name | Definition |
|---|---|
| No GO annotations for molecular function |
3 GO annotations of biological process
| Name | Definition |
|---|---|
| autophagy | The cellular catabolic process in which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation. |
| cellular response to nitrogen starvation | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nitrogen. |
| protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
No homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| No homologous proteins | ||||
| 10 | 20 | 30 | 40 | 50 | 60 |
| MAISSFKHEH | PLEKRQAEAA | RIREKYPDRI | PVIVERAEKS | DVPDIDRKKY | LVPADLTVGQ |
| 70 | 80 | 90 | 100 | 110 | |
| FVYVVRKRIK | LSPEKAIFIF | VKNILPPTAA | IMSAIYEEHK | DEDGFLYMSY | SGENTFGIFF |