Q9LXX5
Gene name |
PPD6 (At3g56650, T5P19.300) |
Protein name |
PsbP domain-containing protein 6, chloroplastic |
Names |
OEC23-like protein 1 |
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT3G56650 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q9LXX5
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q9LXX5-F1 | Predicted | AlphaFoldDB |
14 variants for Q9LXX5
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| tmp_3_20984889_G_T | 28 | R>I | No | 1000Genomes | |
| ENSVATH06327500 | 31 | V>I | No | 1000Genomes | |
| ENSVATH02514608 | 40 | P>A | No | 1000Genomes | |
| ENSVATH02514608 | 40 | P>S | No | 1000Genomes | |
| tmp_3_20985008_C_G | 68 | R>G | No | 1000Genomes | |
| ENSVATH06327502 | 70 | V>A | No | 1000Genomes | |
| ENSVATH06327503 | 78 | L>P | No | 1000Genomes | |
| tmp_3_20985075_C_G | 90 | A>G | No | 1000Genomes | |
| tmp_3_20985074_G_T | 90 | A>S | No | 1000Genomes | |
| tmp_3_20985081_C_T | 92 | P>L | No | 1000Genomes | |
| ENSVATH06327511 | 112 | P>A | No | 1000Genomes | |
| ENSVATH06327513 | 113 | N>S | No | 1000Genomes | |
| tmp_3_20985369_G_A | 118 | R>Q | No | 1000Genomes | |
| ENSVATH02514610 | 240 | S>T | No | 1000Genomes |
No associated diseases with Q9LXX5
1 regional properties for Q9LXX5
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | PsbP, C-terminal | 105 - 261 | IPR002683 |
9 GO annotations of cellular component
| Name | Definition |
|---|---|
| chloroplast | A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. |
| chloroplast stroma | The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. |
| chloroplast thylakoid | Sac-like membranous structures (cisternae) in a chloroplast combined into stacks (grana) and present singly in the stroma (stroma thylakoids or frets) as interconnections between grana. An example of this component is found in Arabidopsis thaliana. |
| chloroplast thylakoid lumen | The cavity enclosed within the chloroplast thylakoid membrane. An example of this component is found in Arabidopsis thaliana. |
| cytosol | The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. |
| extrinsic component of membrane | The component of a membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. |
| photosystem II oxygen evolving complex | A complex, composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins, that catalyzes the splitting of water to O2 and 4 H+. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ). |
| thylakoid | A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. |
| thylakoid lumen | The volume enclosed by a thylakoid membrane. |
1 GO annotations of molecular function
| Name | Definition |
|---|---|
| calcium ion binding | Binding to a calcium ion (Ca2+). |
1 GO annotations of biological process
| Name | Definition |
|---|---|
| photosynthesis | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. |
No homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| No homologous proteins | ||||
| 10 | 20 | 30 | 40 | 50 | 60 |
| MATASLVPTS | KIFSVSPKSS | ASIKARSRVV | VASSQQQQQP | RRRELLLKSA | VAIPAILQLK |
| 70 | 80 | 90 | 100 | 110 | 120 |
| EAPISAAREV | EVGSYLPLSP | SDPSFVLFKA | KPSDTPALRA | GNVQPYQFVL | PPNWKQLRIA |
| 130 | 140 | 150 | 160 | 170 | 180 |
| NILSGNYCQP | KCAEPWIEVK | FENEKQGKVQ | VVASPLIRLT | NKPNATIEDL | GEPEKVIASL |
| 190 | 200 | 210 | 220 | 230 | 240 |
| GPFVTGNSYD | SDELLKTSIE | KIGDQTYYKY | VLETPFALTG | SHNLAKATAK | GSTVVLFVVS |
| 250 | 260 | ||||
| ATEKQWQSSQ | KTLEAILDSF | QL |