Q9C6M1
Gene name |
At1g25520 (F2J7.20) |
Protein name |
GDT1-like protein 4 |
Names |
|
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT1G25520 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q9C6M1
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q9C6M1-F1 | Predicted | AlphaFoldDB |
16 variants for Q9C6M1
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| tmp_1_8962493_C_T | 27 | A>V | No | 1000Genomes | |
| ENSVATH00044111 | 38 | R>K | No | 1000Genomes | |
| tmp_1_8963169_G_A | 90 | G>S | No | 1000Genomes | |
| ENSVATH04641372 | 92 | K>N | No | 1000Genomes | |
| tmp_1_8963283_G_C | 101 | L>F | No | 1000Genomes | |
| ENSVATH13967336 | 109 | D>N | No | 1000Genomes | |
| ENSVATH04641380 | 114 | A>G | No | 1000Genomes | |
| ENSVATH12025653 | 118 | S>T | No | 1000Genomes | |
| tmp_1_8963415_C_A | 118 | S>Y | No | 1000Genomes | |
| ENSVATH04641382 | 122 | S>C | No | 1000Genomes | |
| ENSVATH04641383 | 122 | S>T | No | 1000Genomes | |
| ENSVATH01102472 | 125 | R>I | No | 1000Genomes | |
| ENSVATH01102473 | 125 | R>S | No | 1000Genomes | |
| tmp_1_8963536_A_C | 131 | K>Q | No | 1000Genomes | |
| tmp_1_8963537_A_G | 131 | K>R | No | 1000Genomes | |
| tmp_1_8964156_A_T | 226 | T>S | No | 1000Genomes |
No associated diseases with Q9C6M1
No regional properties for Q9C6M1
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| No domain, repeats, and functional sites for Q9C6M1 | |||
4 GO annotations of cellular component
| Name | Definition |
|---|---|
| endoplasmic reticulum | The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). |
| Golgi apparatus | A membrane-bound cytoplasmic organelle of the endomembrane system that further processes the core oligosaccharides (e.g. N-glycans) added to proteins in the endoplasmic reticulum and packages them into membrane-bound vesicles. The Golgi apparatus operates at the intersection of the secretory, lysosomal, and endocytic pathways. |
| integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
| root hair | A long, thin projection from a root epidermal cell that contains F-actin and tubulin, and a cell wall. |
3 GO annotations of molecular function
| Name | Definition |
|---|---|
| calcium ion transmembrane transporter activity | Enables the transfer of calcium (Ca) ions from one side of a membrane to the other. |
| manganese ion transmembrane transporter activity | Enables the transfer of manganese (Mn) ions from one side of a membrane to the other. |
| metal ion transmembrane transporter activity | Enables the transfer of metal ions from one side of a membrane to the other. |
4 GO annotations of biological process
| Name | Definition |
|---|---|
| calcium ion transmembrane transport | A process in which a calcium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. |
| Golgi calcium ion homeostasis | Any process involved in the maintenance of an internal steady state of calcium ions within the Golgi apparatus of a cell or between the Golgi and its surroundings. |
| Golgi calcium ion transport | The directed movement of calcium ions (Ca2+) into, out of or within the Golgi apparatus. |
| manganese ion transmembrane transport | A process in which a manganese ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. |
1 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| B9G125 | Os08g0433100 | GDT1-like protein 5 | Oryza sativa subsp japonica (Rice) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MSSVLQGFTK | SLAMTFVSEI | GDKTFFAAAI | LAMRYPRRLV | LAGCLSALIV | MTILSATLGW |
| 70 | 80 | 90 | 100 | 110 | 120 |
| AAPNLISRKW | THHITTLLFF | GFGLWSLWDG | FKEGGGGSEE | LAEVEAELDA | DLKANGKSPK |
| 130 | 140 | 150 | 160 | 170 | 180 |
| DSSKREDENK | KQNRAFLTQF | FSPIFLKAFS | INFFGEWGDK | SQLATIGLAA | DENPFGVVLG |
| 190 | 200 | 210 | 220 | ||
| GVVAQFLCTT | AAVIGGKSLA | SQISERIVAL | SGGMLFIIFG | IQSYLTSVEA |