Q8R5L3
Gene name |
Vps39 (Pldn, Vam6) |
Protein name |
Vam6/Vps39-like protein |
Names |
|
Species |
Mus musculus (Mouse) |
KEGG Pathway |
mmu:269338 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q8R5L3
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q8R5L3-F1 | Predicted | AlphaFoldDB |
33 variants for Q8R5L3
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| rs3388582600 | 3 | D>G | No | EVA | |
| rs3388584989 | 8 | V>M | No | EVA | |
| rs3388576972 | 42 | I>T | No | EVA | |
| rs3388579388 | 46 | V>A | No | EVA | |
| rs3388583379 | 97 | I>F | No | EVA | |
| rs3388583329 | 143 | K>M | No | EVA | |
| rs3388586949 | 170 | M>T | No | EVA | |
| rs3388581197 | 181 | F>L | No | EVA | |
| rs3388580835 | 248 | V>M | No | EVA | |
| rs3388579396 | 275 | L>M | No | EVA | |
| rs3388580801 | 284 | P>A | No | EVA | |
| rs3388574597 | 304 | W>* | No | EVA | |
| rs3388579366 | 334 | K>N | No | EVA | |
| rs3388582593 | 349 | K>E | No | EVA | |
| rs3388583571 | 438 | S>P | No | EVA | |
| rs3388578526 | 477 | A>S | No | EVA | |
| rs3388586953 | 487 | C>Y | No | EVA | |
| rs3388578502 | 521 | V>M | No | EVA | |
| rs3388578500 | 539 | T>M | No | EVA | |
| rs3388570125 | 553 | L>M | No | EVA | |
| rs3388583540 | 593 | I>T | No | EVA | |
| rs3388582552 | 636 | D>N | No | EVA | |
| rs3388576929 | 639 | L>M | No | EVA | |
| rs3388581213 | 675 | D>N | No | EVA | |
| rs3388583523 | 678 | R>W | No | EVA | |
| rs3388584985 | 706 | L>F | No | EVA | |
| rs3388580867 | 725 | K>R | No | EVA | |
| rs3388586961 | 726 | H>Q | No | EVA | |
| rs3388579413 | 791 | L>M | No | EVA | |
| rs3388579341 | 855 | C>Y | No | EVA | |
| rs3388574594 | 867 | Y>H | No | EVA | |
| rs3388582040 | 873 | V>M | No | EVA | |
| rs3388580826 | 883 | S>T | No | EVA |
No associated diseases with Q8R5L3
4 regional properties for Q8R5L3
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| repeat | Clathrin, heavy chain/VPS, 7-fold repeat | 573 - 750 | IPR000547 |
| domain | Citron homology (CNH) domain | 10 - 300 | IPR001180 |
| domain | Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1 | 460 - 562 | IPR019452 |
| domain | Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2 | 772 - 879 | IPR019453 |
Functions
7 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
| HOPS complex | A multimeric protein complex that associates with the vacuolar membrane, late endosomal (multivesicular body) and lysosomal membranes. HOPS is a tethering complex involved in vesicle fusion. |
| late endosome | A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center. |
| late endosome membrane | The lipid bilayer surrounding a late endosome. |
| lysosomal HOPS complex | Any HOPS complex that is part of a lysosomal membrane. |
| lysosomal membrane | The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm. |
| membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
No GO annotations of molecular function
| Name | Definition |
|---|---|
| No GO annotations for molecular function |
7 GO annotations of biological process
| Name | Definition |
|---|---|
| autophagosome-lysosome fusion | The process in which autophagosomes, double-membraned vesicles containing cytoplasmic material, fuse with a vacuole (yeast) or lysosome (e.g. mammals and insects). In the case of yeast, inner membrane-bounded structures (autophagic bodies) appear in the vacuole. Fusion provides an acidic environment and digestive function to the interior of the autophagosome. |
| autophagy | The cellular catabolic process in which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation. |
| endocytic recycling | The directed movement of membrane-bounded vesicles from endosomes back to the plasma membrane, a trafficking pathway that promotes the recycling of internalized transmembrane proteins. |
| endosomal vesicle fusion | The homotypic fusion of endocytic vesicles to form or add to an early endosome. |
| endosome to lysosome transport | The directed movement of substances from endosomes to lysosomes. |
| intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. |
| late endosome to lysosome transport | The directed movement of substances from late endosome to lysosome. |
No homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| No homologous proteins | ||||
| 10 | 20 | 30 | 40 | 50 | 60 |
| MHDAFEPVPI | LEKLPLQIDC | LAAWEEWLLV | GTKQGHLLLY | RIRKDVVPAD | VASPESGSCN |
| 70 | 80 | 90 | 100 | 110 | 120 |
| RFEVTLEKSN | KNFSKKIQQI | HVVSQFKILV | SLLENNIYVH | DLLTFQQITT | VSKAKGASLF |
| 130 | 140 | 150 | 160 | 170 | 180 |
| TCDLQHTETG | EEVLRMCVAV | RKKLQLYFWK | DREFHELQGD | FSVPDVPKSM | AWCENSICVG |
| 190 | 200 | 210 | 220 | 230 | 240 |
| FKRDYYLIRV | DGKGSIKELF | PTGKQLEPLV | APLADGKVAV | GQDDLTVVLN | EEGICTQKCA |
| 250 | 260 | 270 | 280 | 290 | 300 |
| LNWTDIPVAM | EHQPPYIVAV | LPRYVEIRTL | EPRLLVQSIE | LQRPRFITSG | GSNIIYVASN |
| 310 | 320 | 330 | 340 | 350 | 360 |
| HFVWRLIPVP | MATQIQQLLQ | DKQFELALQL | AEMKDDSDSE | KQQQIHHIKN | LYAFNLFCQK |
| 370 | 380 | 390 | 400 | 410 | 420 |
| RFDESMQVFA | KLGTDPTHVM | GLYPDLLPTD | YRKQLQYPNP | LPTLSGAELE | KAHLALIDYL |
| 430 | 440 | 450 | 460 | 470 | 480 |
| TQKRSQLVKK | LNDSDHQSST | SPLMEGTPTI | KSKKKLLQII | DTTLLKCYLH | TNVALVAPLL |
| 490 | 500 | 510 | 520 | 530 | 540 |
| RLENNHCHIE | ESEHVLKKAH | KYSELIILYE | KKGLHEKALQ | VLVDQSKKAN | SPLKGHERTV |
| 550 | 560 | 570 | 580 | 590 | 600 |
| QYLQHLGTEN | LHLIFSYSVW | VLRDFPEDGL | KIFTEDLPEV | ESLPRDRVLN | FLIENFKALA |
| 610 | 620 | 630 | 640 | 650 | 660 |
| IPYLEHIIHV | WEETGSQFHN | CLIQLYCEKV | QSLMKDYLLS | LPTGKSPVPA | GEEGGELGEY |
| 670 | 680 | 690 | 700 | 710 | 720 |
| RQKLLMFLEI | SSHYDPGRLI | CDFPFDGLLE | ERALLLGRMG | KHEQALFIYV | HVLKDTKMAK |
| 730 | 740 | 750 | 760 | 770 | 780 |
| EYCHKHYDQN | KEGNKDVYLS | LLRMYLSPPS | IHCLGPIKLE | LLEPQANLQA | ALQVLELHYS |
| 790 | 800 | 810 | 820 | 830 | 840 |
| KLDTTKAINL | LPANTQINDI | RIFLEKVLEE | NAQKKRFNQV | LKNLLHAEFL | RVQEERILHQ |
| 850 | 860 | 870 | 880 | ||
| QVKCIITEEK | VCMVCKKKIG | NSAFARYPNG | VVVHYFCSKE | VNSADT |