Q8MA11

PR
Gene name
rpoC1
Protein name
DNA-directed RNA polymerase subunit beta'
Names
PEP, Plastid-encoded RNA polymerase subunit beta', RNA polymerase subunit beta'
Species
Chaetosphaeridium globosum (Charophycean green alga) (Herposteiron globosum)
KEGG Pathway
EC number
2.7.7.6: Nucleotidyltransferases
Protein Class

Descriptions

The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.

Autoinhibitory domains (AIDs)

194-263 (Predicted disordered autoinhibitory region) PR

Target domain

Relief mechanism

Assay

cis-regPred

Accessory elements

No accessory elements

References

Autoinhibited structure

Activated structure

1 structures for Q8MA11

Entry ID Method Resolution Chain Position Source
AF-Q8MA11-F1 Predicted AlphaFoldDB

No variants for Q8MA11

Variant ID(s) Position Change Description Diseaes Association Provenance
No variants for Q8MA11

No associated diseases with Q8MA11

5 regional properties for Q8MA11

Type Name Position InterPro Accession
domain RNA polymerase, alpha subunit 373 - 420 IPR000722-1
domain RNA polymerase, alpha subunit 437 - 514 IPR000722-2
domain RNA polymerase, N-terminal 262 - 543 IPR006592
domain RNA polymerase Rpb1, domain 3 518 - 650 IPR007066
domain RNA polymerase Rpb1, domain 1 9 - 371 IPR007080

Functions

Description
EC Number 2.7.7.6 Nucleotidyltransferases
Subcellular Localization
  • Plastid, chloroplast
PANTHER Family
PANTHER Subfamily
PANTHER Protein Class
PANTHER Pathway Category No pathway information available

2 GO annotations of cellular component

Name Definition
chloroplast A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
DNA-directed RNA polymerase complex A protein complex that possesses DNA-directed RNA polymerase activity.

4 GO annotations of molecular function

Name Definition
DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
DNA-directed 5'-3' RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
magnesium ion binding Binding to a magnesium (Mg) ion.
zinc ion binding Binding to a zinc ion (Zn).

1 GO annotations of biological process

Name Definition
DNA-templated transcription The synthesis of an RNA transcript from a DNA template.

No homologous proteins in AiPD

UniProt AC Gene Name Protein Name Species Evidence Code
No homologous proteins
10 20 30 40 50 60
MFDKQKNRYI RVELASPDQI RNWAERTLPN GEIVGKVTKP YTLHYNSHKP EKDGLFCERI
70 80 90 100 110 120
FGPIKSGICA CGKYHGFVKN LPEVKFCKQC GVEFTDSKVR RYRMGYIQLA YPATHIWYLK
130 140 150 160 170 180
RLPSHIATLL KMSLKEVESL VYCDLFLPRP IIKKPNLLKV KKLFNYDDQL WKETLPRFFS
190 200 210 220 230 240
TRSFESFQNR EMATGGDAIH KRLSSLNLQK LIFQSYNEWE KLSLQRSTGN SYEDKKIQRM
250 260 270 280 290 300
KDIIIRRIKL AKQFFENNIK PEWMVLSVLP VLPPELRPMI EINQGELITS DLNELYRRVI
310 320 330 340 350 360
YRNNTLIGFL NKSNSTPAGL IIYQKRLVQE AVDALIDNRI GNQIMKDRNN RPYKSFSEII
370 380 390 400 410 420
EGKEGRFRQD LLGKRVDYSG RSVIVVGPSL SLHQCGIPKD MAIELFQPFI IRDLINCQLA
430 440 450 460 470 480
PNLRAARSMI QNQEPIIFKI LEKIIKNHPI LLNRAPTLHR LGIQAFQPIL VEGLAIRLHP
490 500 510 520 530 540
LVCGGFNADF DGDQMAVHIP LSLEAQAEAR FLMLANSNLL SPANGEPITV PSQDMLLGLY
550 560 570 580 590 600
VLTMSCKQGI YIYNEQKLKK KIPYFCNYID VITAYEKKQI NLHDPIWLKW YGNLRGTSST
610 620 630 640 650 660
KKQKLFEIQC ESRGTRRKIF ENWHFCENIR NRKFTIYLFT TPGRIIFNQL LEQSIQATVR
I