Q8GYN5
Gene name |
RIN4 (At3g25070, MJL12_1) |
Protein name |
RPM1-interacting protein 4 |
Names |
|
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT3G25070 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
2 structures for Q8GYN5
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| 2NUD | X-ray | 230 A | C/D | 142-176 | PDB |
| AF-Q8GYN5-F1 | Predicted | AlphaFoldDB |
34 variants for Q8GYN5
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| tmp_3_9132462_C_T | 2 | A>V | No | 1000Genomes | |
| tmp_3_9133033_G_A | 35 | S>N | No | 1000Genomes | |
| ENSVATH00347875 | 36 | K>R | No | 1000Genomes | |
| ENSVATH00347876 | 38 | M>V | No | 1000Genomes | |
| ENSVATH00347877 | 45 | Y>S | No | 1000Genomes | |
| ENSVATH05909966 | 50 | Q>L | No | 1000Genomes | |
| ENSVATH05909968 | 52 | Q>H | No | 1000Genomes | |
| ENSVATH02199324 | 56 | H>P | No | 1000Genomes | |
| ENSVATH02199324 | 56 | H>R | No | 1000Genomes | |
| ENSVATH05909969 | 61 | R>K | No | 1000Genomes | |
| ENSVATH05909970 | 67 | V>L | No | 1000Genomes | |
| ENSVATH00347878 | 68 | D>V | No | 1000Genomes | |
| ENSVATH05909971 | 80 | R>G | No | 1000Genomes | |
| tmp_3_9133168_G_A | 80 | R>Q | No | 1000Genomes | |
| ENSVATH05909972 | 86 | K>T | No | 1000Genomes | |
| ENSVATH00347880 | 88 | F>L | No | 1000Genomes | |
| ENSVATH00347881 | 88 | F>Y | No | 1000Genomes | |
| ENSVATH00347882 | 89 | G>D | No | 1000Genomes | |
| ENSVATH10965270 | 91 | A>V | No | 1000Genomes | |
| ENSVATH10965271 | 96 | N>T | No | 1000Genomes | |
| tmp_3_9133245_G_C | 106 | A>P | No | 1000Genomes | |
| tmp_3_9133279_C_T | 117 | P>L | No | 1000Genomes | |
| ENSVATH05909973 | 118 | L>F | No | 1000Genomes | |
| ENSVATH00347883 | 129 | S>T | No | 1000Genomes | |
| ENSVATH00347884 | 134 | T>A | No | 1000Genomes | |
| ENSVATH10965272 | 136 | L>F | No | 1000Genomes | |
| ENSVATH10965330 | 144 | K>R | No | 1000Genomes | |
| ENSVATH00347889 | 147 | V>A | No | 1000Genomes | |
| tmp_3_9133545_G_A | 180 | A>T | No | 1000Genomes | |
| ENSVATH05909976 | 181 | N>K | No | 1000Genomes | |
| ENSVATH05909977 | 192 | Q>L | No | 1000Genomes | |
| ENSVATH05909978 | 194 | S>T | No | 1000Genomes | |
| tmp_3_9133604_C_G | 199 | N>K | No | 1000Genomes | |
| tmp_3_9133730_G_A | 207 | G>S | No | 1000Genomes |
No associated diseases with Q8GYN5
6 regional properties for Q8GYN5
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| conserved_site | ATP-dependent RNA helicase DEAD-box, conserved site | 270 - 278 | IPR000629 |
| domain | Helicase, C-terminal | 336 - 498 | IPR001650 |
| domain | DEAD/DEAH box helicase domain | 135 - 313 | IPR011545 |
| domain | Helicase superfamily 1/2, ATP-binding domain | 130 - 340 | IPR014001 |
| domain | RNA helicase, DEAD-box type, Q motif | 111 - 139 | IPR014014 |
| domain | DDX52/Rok1, DEAD-box helicase domain | 122 - 328 | IPR044764 |
5 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytosol | The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. |
| endomembrane system | A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles. |
| extrinsic component of plasma membrane | The component of a plasma membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. |
| membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
| plasma membrane | The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. |
No GO annotations of molecular function
| Name | Definition |
|---|---|
| No GO annotations for molecular function |
5 GO annotations of biological process
| Name | Definition |
|---|---|
| defense response to bacterium | Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism. |
| negative regulation of plant-type hypersensitive response | Any process that stops, prevents, or reduces the frequency, rate or extent of the hypersensitive response in a plant. |
| plant-type hypersensitive response | The rapid, localized death of plant cells in response to invasion by a pathogen. |
| protein phosphorylation | The process of introducing a phosphate group on to a protein. |
| response to molecule of bacterial origin | Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of bacterial origin such as peptides derived from bacterial flagellin. |
No homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| No homologous proteins | ||||
| 10 | 20 | 30 | 40 | 50 | 60 |
| MARSNVPKFG | NWEAEENVPY | TAYFDKARKT | RAPGSKIMNP | NDPEYNSDSQ | SQAPPHPPSS |
| 70 | 80 | 90 | 100 | 110 | 120 |
| RTKPEQVDTV | RRSREHMRSR | EESELKQFGD | AGGSSNEAAN | KRQGRASQNN | SYDNKSPLHK |
| 130 | 140 | 150 | 160 | 170 | 180 |
| NSYDGTGKSR | PKPTNLRADE | SPEKVTVVPK | FGDWDENNPS | SADGYTHIFN | KVREERSSGA |
| 190 | 200 | 210 | |||
| NVSGSSRTPT | HQSSRNPNNT | SSCCCFGFGG | K |