Q8DC67
Gene name |
rlmD |
Protein name |
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD |
Names |
23S rRNA(m5U1939)-methyltransferase |
Species |
Vibrio vulnificus (strain CMCP6) |
KEGG Pathway |
vvu:VV1_1574 |
EC number |
2.1.1.190: Methyltransferases |
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q8DC67
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q8DC67-F1 | Predicted | AlphaFoldDB |
No variants for Q8DC67
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| No variants for Q8DC67 | |||||
No associated diseases with Q8DC67
1 regional properties for Q8DC67
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | Ribosomal RNA methyltransferase, FtsJ domain | 57 - 242 | IPR002877 |
Functions
| Description | ||
|---|---|---|
| EC Number | 2.1.1.190 | Methyltransferases |
| Subcellular Localization |
|
|
| PANTHER Family | ||
| PANTHER Subfamily | ||
| PANTHER Protein Class | ||
| PANTHER Pathway Category | No pathway information available | |
No GO annotations of cellular component
| Name | Definition |
|---|---|
| No GO annotations for cellular component |
4 GO annotations of molecular function
| Name | Definition |
|---|---|
| 4 iron, 4 sulfur cluster binding | Binding to a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. |
| iron ion binding | Binding to an iron (Fe) ion. |
| RNA binding | Binding to an RNA molecule or a portion thereof. |
| rRNA (uridine-C5-)-methyltransferase activity | Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing C5-methyluridine. |
No GO annotations of biological process
| Name | Definition |
|---|---|
| No GO annotations for biological process |
No homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| No homologous proteins | ||||
| 10 | 20 | 30 | 40 | 50 | 60 |
| MARFFQPKKK | LQPESKHQQV | LVEKLDHQGA | GIAYLNKKPL | FIDGTLPGEE | VVTQLTESKS |
| 70 | 80 | 90 | 100 | 110 | 120 |
| KFARGKLIKL | LKPAAERVEP | FCSHFNQCGG | CDMQHMDYQA | QLAYKQRTLL | QLMKKFSGSE |
| 130 | 140 | 150 | 160 | 170 | 180 |
| ILLSPPVTGL | EKAYRRRARV | SLMWDKKSRQ | LQFGFRRKQS | KQIENVTQCP | VLVAELECLL |
| 190 | 200 | 210 | 220 | 230 | 240 |
| PELKAILSHF | QHPEHLGHVE | LVAADNGAVI | TLRHTGPLLD | EDVAKLRQCA | EQHQATLYLM |
| 250 | 260 | 270 | 280 | 290 | 300 |
| PASDQLERIS | GEAPYYQEIG | FKVPFEPNNF | IQVNQKVNQQ | MVVQALEWLD | PQSSDRVLDL |
| 310 | 320 | 330 | 340 | 350 | 360 |
| FCGLGNFSLP | IASKAKSVTG | VEGVDEMVQK | AAINASLNQI | NNAQFFHANL | EQDFVGQPWA |
| 370 | 380 | 390 | 400 | 410 | 420 |
| SEKFDKILLD | PARAGASGII | EQVSALGAKR | VVYVSCNPAT | LARDSQSLLE | QGYRLTKLGM |
| 430 | |||||
| LDMFPYTSHL | ESMALFEK |