Q89ZW6
Gene name |
recF |
Protein name |
DNA replication and repair protein RecF |
Names |
|
Species |
Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) |
KEGG Pathway |
bth:BT_4255 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q89ZW6
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q89ZW6-F1 | Predicted | AlphaFoldDB |
No variants for Q89ZW6
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| No variants for Q89ZW6 | |||||
No associated diseases with Q89ZW6
3 regional properties for Q89ZW6
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | RecF/RecN/SMC, N-terminal | 3 - 344 | IPR003395 |
| conserved_site | DNA-binding, RecF, conserved site | 118 - 138 | IPR018078-1 |
| conserved_site | DNA-binding, RecF, conserved site | 301 - 319 | IPR018078-2 |
1 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
2 GO annotations of molecular function
| Name | Definition |
|---|---|
| ATP binding | Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
| single-stranded DNA binding | Binding to single-stranded DNA. |
4 GO annotations of biological process
| Name | Definition |
|---|---|
| DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. |
| DNA synthesis involved in DNA repair | Synthesis of DNA that proceeds from the broken 3' single-strand DNA end and uses the homologous intact duplex as the template. |
| double-strand break repair | The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix. |
| SOS response | An error-prone process for repairing damaged microbial DNA. |
No homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| No homologous proteins | ||||
| 10 | 20 | 30 | 40 | 50 | 60 |
| MILKRISILN | YKNLEQVEIG | FSAKLNCFFG | QNGMGKTNLL | DAVYFLSFCK | SSGNPIDSQN |
| 70 | 80 | 90 | 100 | 110 | 120 |
| IRHEQDFFVI | QGFYEAEDGT | PEEIYCGMKR | RSKKQFKRNK | KEYSRFSDHI | GFLPLVMVSP |
| 130 | 140 | 150 | 160 | 170 | 180 |
| ADSELIAGGS | DERRRFMDVV | ISQYDKEYLE | ALIRYNKALA | QRNTLLKSEF | PVEEELFLVW |
| 190 | 200 | 210 | 220 | 230 | 240 |
| EEMMAQAGEI | VFRKREAFIE | EFIPIFQSFY | SFISQDKEQV | GLSYDSHARD | ASLLEVLKQS |
| 250 | 260 | 270 | 280 | 290 | 300 |
| RERDKIMGFS | LRGIHKDELN | MLLGDFPIKK | EGSQGQNKTY | LVALKLAQFD | FLKRTGQTVP |
| 310 | 320 | 330 | 340 | 350 | 360 |
| LLLLDDIFDK | LDASRVEQIV | KLVAGDNFGQ | IFITDTNREH | LDRILQKVGS | DYKVFRVDQG |
| VINEMGAEQ |