Q7WDS1
Gene name |
prfC |
Protein name |
Peptide chain release factor 3 |
Names |
RF-3 |
Species |
Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) (Alcaligenes bronchisepticus) |
KEGG Pathway |
bbr:BB4916 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q7WDS1
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q7WDS1-F1 | Predicted | AlphaFoldDB |
No variants for Q7WDS1
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| No variants for Q7WDS1 | |||||
No associated diseases with Q7WDS1
6 regional properties for Q7WDS1
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | Translational (tr)-type GTP-binding domain | 8 - 278 | IPR000795 |
| domain | Translation elongation factor EFTu-like, domain 2 | 310 - 376 | IPR004161 |
| domain | Small GTP-binding protein domain | 13 - 144 | IPR005225 |
| conserved_site | Tr-type G domain, conserved site | 55 - 70 | IPR031157 |
| domain | Peptide chain release factor 3, C-terminal | 383 - 511 | IPR032090 |
| domain | Peptide chain release factor 3, GTP-binding domain | 9 - 275 | IPR041732 |
1 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
3 GO annotations of molecular function
| Name | Definition |
|---|---|
| GTP binding | Binding to GTP, guanosine triphosphate. |
| GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + H+ + phosphate. |
| translation release factor activity, codon specific | A translation release factor that is specific for one or more particular termination codons; acts at the ribosomal A-site and require polypeptidyl-tRNA at the P-site. |
1 GO annotations of biological process
| Name | Definition |
|---|---|
| regulation of translational termination | Any process that modulates the frequency, rate or extent of translational termination. |
No homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| No homologous proteins | ||||
| 10 | 20 | 30 | 40 | 50 | 60 |
| MNIPQEVARR | RTFAIISHPD | AGKTTLTEKL | LLFAGAIQIA | GSVKARKASR | HASSDWMEIE |
| 70 | 80 | 90 | 100 | 110 | 120 |
| KQRGISVASS | VMQMEYRDCV | INLLDTPGHQ | DFSEDTYRVL | TAVDAALMVI | DAANGVEPQT |
| 130 | 140 | 150 | 160 | 170 | 180 |
| IRLLQVCRAR | NTPIITFINK | LDREVREPLE | LLSEIEGHLG | MDTVPFSWPV | GMGKAFGGVF |
| 190 | 200 | 210 | 220 | 230 | 240 |
| DIRRNRMRIF | RAGQERRGED | DEFIDGLDNP | EIPRRFGAAF | AQASGEIELI | NEAAPAFDRE |
| 250 | 260 | 270 | 280 | 290 | 300 |
| AFLAGKQTPV | FFGSAINNFG | VQEVLDALVD | QAPAPGPRQA | LEREVRPDEP | KFTGVVFKVQ |
| 310 | 320 | 330 | 340 | 350 | 360 |
| ANMDPAHRDR | VAFVRVSSGR | FERGMRLKVA | RTGKEMRPNN | VVSFLSQRRE | LLDEAYAGDV |
| 370 | 380 | 390 | 400 | 410 | 420 |
| IGIPNHGVLQ | LGDVLTEGES | LRFTGLPFFA | PELFQAVEVK | DPLRTKQLRV | GLTQLGEEGA |
| 430 | 440 | 450 | 460 | 470 | 480 |
| IQVFRPEAAG | GALLLGAVGQ | LQFEVVAHRL | KTEYGVDARM | MPSRYTSARW | ITSDDPRALR |
| 490 | 500 | 510 | 520 | 530 | |
| KFMDANAAHI | AYDVVDAAAF | LITSPAQLRV | AEDLYPNVKF | HALREHGGKV | FGDKA |