Q7NWP9

PR
Gene name
rlmD
Protein name
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Names
23S rRNA(m5U1939)-methyltransferase
Species
Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)
KEGG Pathway
cvi:CV_1932
EC number
2.1.1.190: Methyltransferases
Protein Class

Descriptions

The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.

Autoinhibitory domains (AIDs)

427-514 (Predicted disordered autoinhibitory region) PR

Target domain

Relief mechanism

Assay

cis-regPred

Accessory elements

No accessory elements

References

Autoinhibited structure

Activated structure

1 structures for Q7NWP9

Entry ID Method Resolution Chain Position Source
AF-Q7NWP9-F1 Predicted AlphaFoldDB

No variants for Q7NWP9

Variant ID(s) Position Change Description Diseaes Association Provenance
No variants for Q7NWP9

No associated diseases with Q7NWP9

2 regional properties for Q7NWP9

Type Name Position InterPro Accession
active_site RNA methyltransferase TrmA, active site 371 - 402 IPR030390
conserved_site RNA methyltransferase TrmA, conserved site 424 - 434 IPR030391

Functions

Description
EC Number 2.1.1.190 Methyltransferases
Subcellular Localization
PANTHER Family
PANTHER Subfamily
PANTHER Protein Class
PANTHER Pathway Category No pathway information available

No GO annotations of cellular component

Name Definition
No GO annotations for cellular component

4 GO annotations of molecular function

Name Definition
4 iron, 4 sulfur cluster binding Binding to a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
iron ion binding Binding to an iron (Fe) ion.
RNA binding Binding to an RNA molecule or a portion thereof.
rRNA (uridine-C5-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing C5-methyluridine.

No GO annotations of biological process

Name Definition
No GO annotations for biological process

No homologous proteins in AiPD

UniProt AC Gene Name Protein Name Species Evidence Code
No homologous proteins
10 20 30 40 50 60
MTHPQTIALV ESLDHEGRGV AHVDGKTLFI DGALPYEKVI YSSYRKKPSY ENAQTSAVLK
70 80 90 100 110 120
ESFMRADPRC PHFGVCGGCS MQHVEFTAQV AIKQRVLEDN LKRIGKVKAE RVLTPIAGPA
130 140 150 160 170 180
WHYRHRARLS ARMVAKKGGV LVGFHEKSSS YIAEMRECHI LPKHISDLIM PLREMIATLS
190 200 210 220 230 240
ISQRMPQVEV AVGDKLDILV FRNMDDITDA DFAILKAFSD KHGAAERPLQ IWLQPKGPDT
250 260 270 280 290 300
CYPIYPLDAP KLTYSMPEFA VEMPYYPTEF TQVNPQINAV MVARALKFLD PQPGERIADM
310 320 330 340 350 360
FCGIGNFTLP IARSGAVVHG MEGSQPLVRR AVENATHNGL QDKVSYEMAN LFDVTEESFA
370 380 390 400 410 420
ALGKFDKMLV DPPRDGAVQL LKAITEETAP QRIVYVSCNP STLARDAGVL VHTKGYTLKA
430 440 450 460 470 480
AGIINMFPHT AHVESVAWFE KTGPCKTRKE VEEIEALEAA EREAAKAARL AEENAEKARK
490 500 510
AAELAEKAAA KEARRAHYFA EKARRDAEEA ASDQ