Q6D4C8
Gene name |
rsmF |
Protein name |
Ribosomal RNA small subunit methyltransferase F |
Names |
16S rRNA m5C1407 methyltransferase, rRNA (cytosine-C(5)-)-methyltransferase RsmF |
Species |
Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) (Erwinia carotovora subsp. atroseptica) |
KEGG Pathway |
eca:ECA2464 |
EC number |
2.1.1.178: Methyltransferases |
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q6D4C8
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q6D4C8-F1 | Predicted | AlphaFoldDB |
No variants for Q6D4C8
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| No variants for Q6D4C8 | |||||
No associated diseases with Q6D4C8
5 regional properties for Q6D4C8
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | SAM-dependent methyltransferase RsmB/NOP2-type | 30 - 312 | IPR001678 |
| domain | Nop2p | 42 - 311 | IPR011023 |
| conserved_site | Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site | 189 - 200 | IPR018314 |
| domain | rRNA small subunit methyltransferase F, RNA-binding PUA-like domain | 425 - 472 | IPR027391 |
| domain | Ribosomal RNA small subunit methyltransferase F, N-terminal | 9 - 106 | IPR031341 |
Functions
| Description | ||
|---|---|---|
| EC Number | 2.1.1.178 | Methyltransferases |
| Subcellular Localization |
|
|
| PANTHER Family | ||
| PANTHER Subfamily | ||
| PANTHER Protein Class | ||
| PANTHER Pathway Category | No pathway information available | |
1 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
2 GO annotations of molecular function
| Name | Definition |
|---|---|
| RNA binding | Binding to an RNA molecule or a portion thereof. |
| rRNA (cytosine) methyltransferase activity | Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing methylcytosine. |
No GO annotations of biological process
| Name | Definition |
|---|---|
| No GO annotations for biological process |
No homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| No homologous proteins | ||||
| 10 | 20 | 30 | 40 | 50 | 60 |
| MAKFTPASLP | AEFLDTMRDI | MPSSLSMEDF | IAACQRPLRR | SIRVNTLKIS | VDAFLQLAQP |
| 70 | 80 | 90 | 100 | 110 | 120 |
| YGWQLEPIPW | CQEGFWLLNA | EEENTRLGNT | LEHLSGLFYI | QEASSMLPAS | ALFHHNDAPG |
| 130 | 140 | 150 | 160 | 170 | 180 |
| TILDVAAAPG | SKTTQIAARL | NNEGAIVANE | YSASRVKVLH | ANISRCGVSN | TAITHFDGRV |
| 190 | 200 | 210 | 220 | 230 | 240 |
| FGAALPEYFD | AILLDAPCSG | EGVVRKDPAA | MSHWSQESIT | DIAATQRDLI | LSAFHALKPG |
| 250 | 260 | 270 | 280 | 290 | 300 |
| GVMIYSTCTL | NRQENQQVCR | WLQAQFPDAC | EFESLDDLFA | GAERATTEEG | FLHVFPQIYD |
| 310 | 320 | 330 | 340 | 350 | 360 |
| SEGFFVARLR | KTGSVPPLPR | PGYKVGKFPF | SPVAHKDRAL | LTEAARKQGI | RWDEELLQLW |
| 370 | 380 | 390 | 400 | 410 | 420 |
| QRDSEVWLFP | AALTSAFGNI | KFSRIGIKLA | ERFPKGFRWQ | HEAIVALADP | NASNAYALND |
| 430 | 440 | 450 | 460 | 470 | 480 |
| RIACEWFQGK | DSYPEPLPTA | DELILTYQNT | PVGLAKRISS | RIKNSLPRDL | VRDGASSARP |
| LAKE |