Q6D3N6

PR
Gene name
rimO
Protein name
Ribosomal protein S12 methylthiotransferase RimO
Names
S12 MTTase, S12 methylthiotransferase, Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase, Ribosome maturation factor RimO
Species
Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) (Erwinia carotovora subsp. atroseptica)
KEGG Pathway
eca:ECA2708
EC number
2.8.4.4: Transferring alkylthio groups
Protein Class

Descriptions

The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.

Autoinhibitory domains (AIDs)

86-162 (Predicted disordered autoinhibitory region) PR

Target domain

Relief mechanism

Assay

cis-regPred

Accessory elements

No accessory elements

References

Autoinhibited structure

Activated structure

1 structures for Q6D3N6

Entry ID Method Resolution Chain Position Source
AF-Q6D3N6-F1 Predicted AlphaFoldDB

No variants for Q6D3N6

Variant ID(s) Position Change Description Diseaes Association Provenance
No variants for Q6D3N6

No associated diseases with Q6D3N6

2 regional properties for Q6D3N6

Type Name Position InterPro Accession
binding_site Serine hydroxymethyltransferase, pyridoxal phosphate binding site 265 - 281 IPR019798
domain Serine hydroxymethyltransferase-like domain 42 - 440 IPR039429

Functions

Description
EC Number 2.8.4.4 Transferring alkylthio groups
Subcellular Localization
  • Cytoplasm
PANTHER Family
PANTHER Subfamily
PANTHER Protein Class
PANTHER Pathway Category No pathway information available

1 GO annotations of cellular component

Name Definition
cytoplasm The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

3 GO annotations of molecular function

Name Definition
4 iron, 4 sulfur cluster binding Binding to a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
metal ion binding Binding to a metal ion.
protein methylthiotransferase activity Catalysis of the reaction: 2 S-adenosyl-L-methionine + a

2 GO annotations of biological process

Name Definition
peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid The modification of peptidyl-aspartic acid to form peptidyl-L-beta-methylthioaspartic acid, typical of bacterial ribosomal protein S12.
tRNA modification The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically.

No homologous proteins in AiPD

UniProt AC Gene Name Protein Name Species Evidence Code
No homologous proteins
10 20 30 40 50 60
MSNISTPQPR IGFVSLGCPK NLVDSERILT ELRTEGYQVV PRYDDAELVI VNTCGFIDSA
70 80 90 100 110 120
VQESLEAIGE ALNENGKVIV TGCLGAKENQ IREVHPKVLE ITGPHSYEQV LSHVHQYVPK
130 140 150 160 170 180
PTHNPFTSLV PEQGVKLTPR HYAYLKISEG CNHRCTFCII PSMRGDLDSR PIGSVLDEAK
190 200 210 220 230 240
RLVNAGVKEL LVISQDTSAY GADVKQRTGF WNGQPVKTSM VSLCEQLASL GVWVRLHYVY
250 260 270 280 290 300
PYPHVDDVIP LMAEGKILPY LDIPLQHASP KILKLMKRPG AVERTLERIK RWREICPDLT
310 320 330 340 350 360
LRSTFIVGFP GETEEDFQML LDFLKEAKLD RVGCFKFSPV EGAAANELPD QVPEEVKEER
370 380 390 400 410 420
FHRFMQLQQA ISTQRLQDKI GREVLVLIDE IDEEGAIGRS MADAPEIDGA VYLNGETGVK
430 440
VGDIVKVKVE HADEYDLWGS RV