Q6D0W5

PR
Gene name
cas6f (csy4, ECA3684)
Protein name
CRISPR-associated endonuclease Cas6f/Csy4
Names
crRNA endonuclease
Species
Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) (Erwinia carotovora subsp. atroseptica)
KEGG Pathway
eca:ECA3684
EC number
Protein Class

Descriptions

The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.

Autoinhibitory domains (AIDs)

73-147 (Predicted disordered autoinhibitory region) PR

Target domain

Relief mechanism

Assay

cis-regPred

Accessory elements

No accessory elements

References

Autoinhibited structure

Activated structure

1 structures for Q6D0W5

Entry ID Method Resolution Chain Position Source
AF-Q6D0W5-F1 Predicted AlphaFoldDB

No variants for Q6D0W5

Variant ID(s) Position Change Description Diseaes Association Provenance
No variants for Q6D0W5

No associated diseases with Q6D0W5

3 regional properties for Q6D0W5

Type Name Position InterPro Accession
domain DnaJ domain 4 - 80 IPR001623
domain Chaperone DnaJ, C-terminal 134 - 291 IPR002939
conserved_site DnaJ domain, conserved site 46 - 65 IPR018253

Functions

Description
EC Number
Subcellular Localization
PANTHER Family
PANTHER Subfamily
PANTHER Protein Class
PANTHER Pathway Category No pathway information available

No GO annotations of cellular component

Name Definition
No GO annotations for cellular component

2 GO annotations of molecular function

Name Definition
endonuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
RNA binding Binding to an RNA molecule or a portion thereof.

2 GO annotations of biological process

Name Definition
defense response to virus Reactions triggered in response to the presence of a virus that act to protect the cell or organism.
maintenance of CRISPR repeat elements Any process involved in sustaining CRISPR repeat clusters, including capture of new spacer elements, expansion or contraction of clusters, propagation of the leader sequence and repeat clusters within a genome, transfer of repeat clusters and CRISPR-associated (cas) genes to new genomes, transcription of the CRISPR repeat arrays into RNA and processing, and interaction of CRISPR/cas loci with the host genome. CRISPR (clustered regularly interspaced short palindromic repeat) elements are a family of sequence elements containing multiple direct repeats of 24-48 bp with weak dyad symmetry which are separated by regularly sized nonrepetitive spacer sequences.

No homologous proteins in AiPD

UniProt AC Gene Name Protein Name Species Evidence Code
No homologous proteins
10 20 30 40 50 60
MDHYIDIRVQ PDPEFTASQL LNALFAKLHR VLGQLANGKI GISFPEVGKT LGECLRLHGT
70 80 90 100 110 120
EDALSTLEKT SWLKGLRDYT QVSECKVVPN GVKFRTVRRV QLKSSAERLR RRSVSKGWLT
130 140 150 160 170 180
AAEAAARIPD AVEKRSALPF VQIKSLSNGQ MFFVFVEHGP LQNAPTAGRF SSYGLSTEAT
VPWF