Q5LLW5

PR
Gene name
smpB
Protein name
SsrA-binding protein
Names
Small protein B
Species
Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter pomeroyi)
KEGG Pathway
sil:SPO3806
EC number
Protein Class

Descriptions

The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.

Autoinhibitory domains (AIDs)

1-43 (Predicted disordered autoinhibitory region) PR

Target domain

Relief mechanism

Assay

cis-regPred

Accessory elements

No accessory elements

References

Autoinhibited structure

Activated structure

1 structures for Q5LLW5

Entry ID Method Resolution Chain Position Source
AF-Q5LLW5-F1 Predicted AlphaFoldDB

No variants for Q5LLW5

Variant ID(s) Position Change Description Diseaes Association Provenance
No variants for Q5LLW5

No associated diseases with Q5LLW5

2 regional properties for Q5LLW5

Type Name Position InterPro Accession
domain DNA/RNA-binding domain, Est1-type 224 - 507 IPR018834
domain Telomerase activating protein Est1-like, N-terminal 82 - 209 IPR019458

Functions

Description
EC Number
Subcellular Localization
  • Cytoplasm
  • The tmRNA-SmpB complex associates with stalled 70S ribosomes
PANTHER Family
PANTHER Subfamily
PANTHER Protein Class
PANTHER Pathway Category No pathway information available

1 GO annotations of cellular component

Name Definition
cytoplasm The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

1 GO annotations of molecular function

Name Definition
RNA binding Binding to an RNA molecule or a portion thereof.

1 GO annotations of biological process

Name Definition
trans-translation A translational elongation process in which transfer of a translating ribosome from one mRNA to another RNA template takes place. Trans-translation occurs during tmRNA release of stalled ribosomes.

No homologous proteins in AiPD

UniProt AC Gene Name Protein Name Species Evidence Code
No homologous proteins
10 20 30 40 50 60
MAKKISDPNY KVIAENRRAR FDYAIESDLE CGIMLEGSEV KALRGGGSNI ADSYAAVENG
70 80 90 100 110 120
ELWLVNAYIP PYEQAKMFKH EERRRRKLLV SRKELANLWN ATQRKGMTLV PLVLYFNHKG
130 140 150
IAKMKLGIAK GKKIHDKRET EAKRDWNRQK QRLLKDNA