Q5JDI0

PR
Gene name
rpl4
Protein name
50S ribosomal protein L4
Names
Species
Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
KEGG Pathway
tko:TK1541
EC number
Protein Class

Descriptions

The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.

Autoinhibitory domains (AIDs)

18-106 (Predicted disordered autoinhibitory region) PR

Target domain

Relief mechanism

Assay

cis-regPred

Accessory elements

No accessory elements

References

Autoinhibited structure

Activated structure

4 structures for Q5JDI0

Entry ID Method Resolution Chain Position Source
6SKF EM 295 A BE 1-255 PDB
6SKG EM 265 A BE 1-255 PDB
6TH6 EM 255 A BE 1-255 PDB
AF-Q5JDI0-F1 Predicted AlphaFoldDB

No variants for Q5JDI0

Variant ID(s) Position Change Description Diseaes Association Provenance
No variants for Q5JDI0

No associated diseases with Q5JDI0

1 regional properties for Q5JDI0

Type Name Position InterPro Accession
conserved_site Ribosomal protein L4/L1e, eukaryotic/archaeal, conserved site 106 - 132 IPR013000

Functions

Description
EC Number
Subcellular Localization
PANTHER Family
PANTHER Subfamily
PANTHER Protein Class
PANTHER Pathway Category No pathway information available

1 GO annotations of cellular component

Name Definition
cytosolic large ribosomal subunit The large subunit of a ribosome located in the cytosol.

3 GO annotations of molecular function

Name Definition
RNA binding Binding to an RNA molecule or a portion thereof.
rRNA binding Binding to a ribosomal RNA.
structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.

1 GO annotations of biological process

Name Definition
translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.

No homologous proteins in AiPD

UniProt AC Gene Name Protein Name Species Evidence Code
No homologous proteins
10 20 30 40 50 60
MKVKVFNLEG EPVEEIELPK VFSTPFRPDL IRRAVIASWT HRIQPQGRDP QAGKRRVTEN
70 80 90 100 110 120
IGKGHGMARV ERIKTSPRFA AFVPFAVGGR RTHPPKVEKI IWEDINKKER RLAIMSAIAA
130 140 150 160 170 180
TANYDLVRAR GHVVDNVVQI PLVVTDDLQK VFKTAQTREI FKKLGVWDDI ERAKKNTKIR
190 200 210 220 230 240
AGKGKMRGRR YKKAKGPLIV VAKNEGIVQG ARNHPGVDVV TVDNLGVEYL APGTHPGRLT
250
IWTKGAIERL REIYG