Q55750
Gene name |
mfd |
Protein name |
Transcription-repair-coupling factor |
Names |
TRCF |
Species |
Synechocystis sp (strain PCC 6803 / Kazusa) |
KEGG Pathway |
syn:sll0377 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q55750
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q55750-F1 | Predicted | AlphaFoldDB |
No variants for Q55750
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| No variants for Q55750 | |||||
No associated diseases with Q55750
No regional properties for Q55750
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| No domain, repeats, and functional sites for Q55750 | |||
1 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
7 GO annotations of molecular function
| Name | Definition |
|---|---|
| ATP binding | Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
| damaged DNA binding | Binding to damaged DNA. |
| DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
| DNA translocase activity | Generation of movement along a single- or double-stranded DNA molecule, driven by ATP hydrolysis. |
| helicase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix. |
| hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. |
| RNA polymerase core enzyme binding | Binding to an RNA polymerase core enzyme, containing a specific subunit composition defined as the core enzyme. |
2 GO annotations of biological process
| Name | Definition |
|---|---|
| regulation of DNA-templated transcription | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
| transcription-coupled nucleotide-excision repair, DNA damage recognition | The identification of lesions on the actively transcribed strand of the DNA duplex as well as a small subset of lesions not recognized by the general nucleotide-excision repair pathway. |
No homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| No homologous proteins | ||||
| 10 | 20 | 30 | 40 | 50 | 60 |
| MAEPRAVLKQ | GNRNRDKDSV | GLGNRLRFVS | ISSALNPMTF | SSILRHLQTL | PLSKDLREKL |
| 70 | 80 | 90 | 100 | 110 | 120 |
| QKRGHVQLSG | LPRLPKGLIV | SSLAQSLEKN | LLVITATLEE | AGRWTAQLEL | MGWQTVNFYP |
| 130 | 140 | 150 | 160 | 170 | 180 |
| TSEASPYDPG | RLESEMVWGQ | MQVLAELIQG | HQVKGKAIVA | TEKALQPHLP | PVATLREYCL |
| 190 | 200 | 210 | 220 | 230 | 240 |
| ALRRGQEMDS | KSLELTLARL | GYERGSTVET | EGQWSRRGDI | VDIFPVSAEL | PVRLEWFGDE |
| 250 | 260 | 270 | 280 | 290 | 300 |
| LEKIREFDPA | SQRSLDDLTG | LVLTPTSFDQ | VIEPALNAQA | IDLSAWGEDA | ETEQLFGKEG |
| 310 | 320 | 330 | 340 | 350 | 360 |
| LQRFLGLAFT | EPACLLDYLP | TETVCVLDEP | EQCAAHSERW | FEAVAQDWSA | LQLPNLPQLH |
| 370 | 380 | 390 | 400 | 410 | 420 |
| RNFSALGDRL | KTDFQYITLS | EIHEANGDSL | DISARPIPTM | PHQFAKLAEI | LRGKREIYSG |
| 430 | 440 | 450 | 460 | 470 | 480 |
| LTLGQYSTWL | ISAQPSRTVS | LLQEHDCAVQ | FIANPRDYPA | IEKSQIQRTA | VTLKYSGLAE |
| 490 | 500 | 510 | 520 | 530 | 540 |
| LEGFILPTFR | LVLVTDRELF | GQHALATPEY | VRKRRRATSK | QVDINKLSPG | DYVVHKSHGI |
| 550 | 560 | 570 | 580 | 590 | 600 |
| GKFLKLDALA | NREYLMIQYA | DGILRVPADS | LDSLSRFRHT | GTRPPELHKM | GGKVWEATKN |
| 610 | 620 | 630 | 640 | 650 | 660 |
| KVRKAVKKLA | VDLLNLYAKR | AKQVGYAYPP | DSPWQQELED | SFPYQPTPDQ | LKAVQDVKRD |
| 670 | 680 | 690 | 700 | 710 | 720 |
| LEGDRPMDRL | VCGDVGFGKT | EVAVRAIFKA | VTSGNKQVAL | LAPTTVLTQQ | HYHTLKERFA |
| 730 | 740 | 750 | 760 | 770 | 780 |
| PYPITIGLLN | RFRTASEKKE | ILAKLKSGEL | DIVVGTQQVL | GTSVKFKDLG | LLVIDEEQRF |
| 790 | 800 | 810 | 820 | 830 | 840 |
| GVNQKEKIKT | LKTEVDVLTL | TATPIPRTLY | MSLSGIREMS | LITTPPPSRR | PIKTHLSPYN |
| 850 | 860 | 870 | 880 | 890 | 900 |
| PEVIRTAIRN | ELDRGGQVFY | VVPRIEGIEE | LGGQLRQMVP | SARIAIGHGQ | MEESELESTM |
| 910 | 920 | 930 | 940 | 950 | 960 |
| LAFNDGEADI | LVCTTIIEAG | LDIPRVNTII | VEDAQKFGLA | QLYQLRGRVG | RSGIQAHAWL |
| 970 | 980 | 990 | 1000 | 1010 | 1020 |
| LYPNQKQLTE | KARLRLRALQ | EFSQLGSGYQ | LATRDMEIRG | VGNLLGAEQS | GQMEAIGYEF |
| 1030 | 1040 | 1050 | 1060 | 1070 | 1080 |
| YMEMLQDAIK | EIQGQEIPKV | EDTQIDLPLT | AFIPSDYIPD | LEEKMAAYRR | ITSIESTDEL |
| 1090 | 1100 | 1110 | 1120 | 1130 | 1140 |
| PKIALDWGDR | YGMLPSPVEE | LFKVVKLKHL | AKSLGFSRIK | VEGKQNLVLE | TPMEEPAWKL |
| 1150 | 1160 | 1170 | 1180 | 1190 | |
| LAENLPNHLQ | SRFVYSAKKV | VVRGLGVLAP | AKQMDNLIDW | FGKMQGALPE | TKMETLVGK |