Q20374
Gene name |
patr-1 |
Protein name |
Protein PAT1 homolog 1 |
Names |
|
Species |
Caenorhabditis elegans |
KEGG Pathway |
cel:CELE_F43G6.9 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q20374
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q20374-F1 | Predicted | AlphaFoldDB |
No variants for Q20374
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| No variants for Q20374 | |||||
No associated diseases with Q20374
No regional properties for Q20374
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| No domain, repeats, and functional sites for Q20374 | |||
1 GO annotations of cellular component
| Name | Definition |
|---|---|
| P-body | A focus in the cytoplasm where mRNAs may become inactivated by decapping or some other mechanism. Protein and RNA localized to these foci are involved in mRNA degradation, nonsense-mediated mRNA decay (NMD), translational repression, and RNA-mediated gene silencing. |
1 GO annotations of molecular function
| Name | Definition |
|---|---|
| RNA binding | Binding to an RNA molecule or a portion thereof. |
3 GO annotations of biological process
| Name | Definition |
|---|---|
| deadenylation-dependent decapping of nuclear-transcribed mRNA | Cleavage of the 5'-cap of a nuclear mRNA triggered by shortening of the poly(A) tail to below a minimum functional length. |
| determination of adult lifespan | The pathways that regulate the duration of the adult phase of the life-cycle of an animal. |
| P-body assembly | The aggregation, arrangement and bonding together of proteins and RNA molecules to form a cytoplasmic mRNA processing body. |
1 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| P25644 | PAT1 | DNA topoisomerase 2-associated protein PAT1 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MEEVKKYGKT | LEEIEGGLMF | DDFPESLVDS | DEDHNIFDDE | FDAANDETFG | GGLDNIGENA |
| 70 | 80 | 90 | 100 | 110 | 120 |
| ELENYATQTA | KLRFDDPVWQ | KPSSSDHVAP | SASEIPIPFP | NFGNGDASDS | FKSSFEAESP |
| 130 | 140 | 150 | 160 | 170 | 180 |
| FLKKSIWGNG | TDGAYNIWGT | NFGISSVPAA | PTLDLDFGAL | LPTPTIQATK | EVKSSQIPSM |
| 190 | 200 | 210 | 220 | 230 | 240 |
| PSSALTLEDC | ERMQMGNKPD | SLVDAFKDLQ | LGSTPVQPQS | AQFSKHPLEA | RIAAPGTPAT |
| 250 | 260 | 270 | 280 | 290 | 300 |
| ASSQALPTLP | TAALSLEELE | LQIMKEAQIL | KGRQQVPSDM | REDNKFSHPP | PGFNQNVQPR |
| 310 | 320 | 330 | 340 | 350 | 360 |
| MDPSLSPGGM | HGMPPSMGTS | MPHMGPMMPP | QNMQLPRLPP | LNPQFLPLIP | VWFNAIINNI |
| 370 | 380 | 390 | 400 | 410 | 420 |
| QLPMGVPPPP | PFLFQLLNHY | RNPQLVHAMI | MQSSIPPNIR | QNGPQFSHPS | GPHSPGNRVQ |
| 430 | 440 | 450 | 460 | 470 | 480 |
| RKHSGMPSTR | TIYDLALDSF | AGYMSYKERE | WLIRIQFIQC | KGSGDPQVDD | YYYVTWRDKQ |
| 490 | 500 | 510 | 520 | 530 | 540 |
| IANGWTAETK | LEEATKEKKE | KSSESQKDYL | ERISRMNYRE | MQKERARERD | KERQRERQER |
| 550 | 560 | 570 | 580 | 590 | 600 |
| IDRGEDKKLR | QTLSDKFATS | LGLPSKSSTH | NPRHVLDMKA | QVESVDNQTK | KLSDEERKIA |
| 610 | 620 | 630 | 640 | 650 | 660 |
| VAKKLRTMLL | RLEGALNILM | EVDELRRSSL | PEKSQFKDLS | SDEKDQEVEK | RTTVIINELM |
| 670 | 680 | 690 | 700 | 710 | 720 |
| GDDLSKLMQM | SKGRAVITRT | LKVVEPRDQA | RIILALMTAG | GLVSKKMYGE | IVLDILPVVY |
| 730 | 740 | 750 | 760 | 770 | 780 |
| QKVSNLHPDQ | FKYLVGALNL | DTLKRQLLDS | NMFIRDMMMT | LFFVSVKNNQ | QLVEWAKATK |
| 790 | 800 | 810 | 820 | 830 | |
| FSSLKMPSSA | PLSIWRKALS | VISDSEIKEF | ADDIKYSGIV | DCHDVAQLIE | QSL |