Q1IQ53

PR
Gene name
smpB
Protein name
SsrA-binding protein
Names
Small protein B
Species
Koribacter versatilis (strain Ellin345)
KEGG Pathway
aba:Acid345_1996
EC number
Protein Class

Descriptions

The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.

Autoinhibitory domains (AIDs)

1-52 (Predicted disordered autoinhibitory region) PR

Target domain

Relief mechanism

Assay

cis-regPred

Accessory elements

No accessory elements

References

Autoinhibited structure

Activated structure

1 structures for Q1IQ53

Entry ID Method Resolution Chain Position Source
AF-Q1IQ53-F1 Predicted AlphaFoldDB

No variants for Q1IQ53

Variant ID(s) Position Change Description Diseaes Association Provenance
No variants for Q1IQ53

No associated diseases with Q1IQ53

8 regional properties for Q1IQ53

Type Name Position InterPro Accession
repeat WD40 repeat 426 - 474 IPR001680-1
repeat WD40 repeat 585 - 626 IPR001680-2
repeat WD40 repeat 629 - 667 IPR001680-3
repeat WD40 repeat 670 - 709 IPR001680-4
repeat WD40 repeat 713 - 753 IPR001680-5
repeat WD40 repeat 765 - 809 IPR001680-6
domain BOP1, N-terminal domain 167 - 426 IPR012953
conserved_site WD40 repeat, conserved site 452 - 466 IPR019775

Functions

Description
EC Number
Subcellular Localization
  • Cytoplasm
  • The tmRNA-SmpB complex associates with stalled 70S ribosomes
PANTHER Family
PANTHER Subfamily
PANTHER Protein Class
PANTHER Pathway Category No pathway information available

1 GO annotations of cellular component

Name Definition
cytoplasm The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

1 GO annotations of molecular function

Name Definition
RNA binding Binding to an RNA molecule or a portion thereof.

1 GO annotations of biological process

Name Definition
trans-translation A translational elongation process in which transfer of a translating ribosome from one mRNA to another RNA template takes place. Trans-translation occurs during tmRNA release of stalled ribosomes.

No homologous proteins in AiPD

UniProt AC Gene Name Protein Name Species Evidence Code
No homologous proteins
10 20 30 40 50 60
MTRNPQPDRS KTAPKNAKRD PVASGERDAS VNRAASHNYF LLDKYEAGVA LRGTEVKSIR
70 80 90 100 110 120
DGRANLKDAY GLVKENELWL INAHIGPYDA ASYNNHAPLR TRKLLVKKRE ILKLLAASQQ
130 140 150 160 170
KGHTLIPTRM YFKNGRVKVE LAVAKGKQLW DKRETDRRKT ADRDAREAIA RSRKS