Q13Z67

PR
Gene name
rlmD
Protein name
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Names
23S rRNA(m5U1939)-methyltransferase
Species
Paraburkholderia xenovorans (strain LB400)
KEGG Pathway
bxe:Bxe_A2348
EC number
2.1.1.190: Methyltransferases
Protein Class

Descriptions

The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.

Autoinhibitory domains (AIDs)

1-57 (Predicted disordered autoinhibitory region) PR

Target domain

Relief mechanism

Assay

cis-regPred

Accessory elements

No accessory elements

References

Autoinhibited structure

Activated structure

1 structures for Q13Z67

Entry ID Method Resolution Chain Position Source
AF-Q13Z67-F1 Predicted AlphaFoldDB

No variants for Q13Z67

Variant ID(s) Position Change Description Diseaes Association Provenance
No variants for Q13Z67

No associated diseases with Q13Z67

2 regional properties for Q13Z67

Type Name Position InterPro Accession
domain TRAM domain 23 - 87 IPR002792
conserved_site RNA methyltransferase TrmA, conserved site 454 - 464 IPR030391

Functions

Description
EC Number 2.1.1.190 Methyltransferases
Subcellular Localization
PANTHER Family
PANTHER Subfamily
PANTHER Protein Class
PANTHER Pathway Category No pathway information available

No GO annotations of cellular component

Name Definition
No GO annotations for cellular component

4 GO annotations of molecular function

Name Definition
4 iron, 4 sulfur cluster binding Binding to a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
iron ion binding Binding to an iron (Fe) ion.
RNA binding Binding to an RNA molecule or a portion thereof.
rRNA (uridine-C5-)-methyltransferase activity Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing C5-methyluridine.

No GO annotations of biological process

Name Definition
No GO annotations for biological process

No homologous proteins in AiPD

UniProt AC Gene Name Protein Name Species Evidence Code
No homologous proteins
10 20 30 40 50 60
MSRTAPHRRA PKRYKTPPPA PAHVVTGNEP VIEIISLDME ARGVGRTETE DGTPGKVIFV
70 80 90 100 110 120
EGVLPGERVS YSTHRSKPKF EQAEVVQVLR ESVMRTKPKC TYFDICGGCS MQHLDIRAQV
130 140 150 160 170 180
AVKQRVLEDN LQHLAKLRPE TVFRPIHGPS WGYRYRARLA VRFLPEKGGM RIGFHEKKSS
190 200 210 220 230 240
YIADMKTCEV LPPHVSAMLM PLRFMVRKLS IYDRMPQLEL AVGSSVTALV VRNLEPITAA
250 260 270 280 290 300
DEQVLRDFAD EHKVQFWLQP GGPDTVTPFY PLDVQLDYTL PEYGIRMPFK PTDFTQVNHA
310 320 330 340 350 360
INRVLVSRAL RLLAPARTDR VLDLFCGIGN FTLPLARISK EVMGIEGSEV LTSRALANAG
370 380 390 400 410 420
LNGVAGHTSF ECRNLFEVTA DDLRALGHFD KFLIDPPREG ALAVAKALAE IARSGNGPLP
430 440 450 460 470
KRIVYVSCAP ATLARDAGLL VHEAGYRLVG AGVVNMFPHT SHVESIALFE RD