Q09747
Gene name |
dbp5 (SPBC12C2.06) |
Protein name |
ATP-dependent RNA helicase dbp5 |
Names |
|
Species |
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) |
KEGG Pathway |
spo:SPBC12C2.06 |
EC number |
3.6.4.13: Acting on ATP; involved in cellular and subcellular movement |
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
2 structures for Q09747
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| 3FHO | X-ray | 280 A | A/B | 139-503 | PDB |
| AF-Q09747-F1 | Predicted | AlphaFoldDB |
No variants for Q09747
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| No variants for Q09747 | |||||
No associated diseases with Q09747
5 regional properties for Q09747
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| conserved_site | ATP-dependent RNA helicase DEAD-box, conserved site | 259 - 267 | IPR000629 |
| domain | Helicase, C-terminal | 325 - 493 | IPR001650 |
| domain | DEAD/DEAH box helicase domain | 139 - 302 | IPR011545 |
| domain | Helicase superfamily 1/2, ATP-binding domain | 133 - 329 | IPR014001 |
| domain | RNA helicase, DEAD-box type, Q motif | 114 - 142 | IPR014014 |
Functions
| Description | ||
|---|---|---|
| EC Number | 3.6.4.13 | Acting on ATP; involved in cellular and subcellular movement |
| Subcellular Localization |
|
|
| PANTHER Family | ||
| PANTHER Subfamily | ||
| PANTHER Protein Class | ||
| PANTHER Pathway Category | No pathway information available | |
6 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytoplasmic stress granule | A dense aggregation in the cytosol composed of proteins and RNAs that appear when the cell is under stress. |
| cytosol | The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. |
| nuclear envelope | The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space). |
| nuclear membrane | Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space. |
| nuclear pore | A protein complex providing a discrete opening in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined. |
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
4 GO annotations of molecular function
| Name | Definition |
|---|---|
| ATP binding | Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
| ATP hydrolysis activity | Catalysis of the reaction: ATP + H2O = ADP + H+ phosphate. ATP hydrolysis is used in some reactions as an energy source, for example to catalyze a reaction or drive transport against a concentration gradient. |
| RNA binding | Binding to an RNA molecule or a portion thereof. |
| RNA helicase activity | Unwinding of an RNA helix, driven by ATP hydrolysis. |
3 GO annotations of biological process
| Name | Definition |
|---|---|
| cytoplasmic translational termination | The process resulting in the release of a polypeptide chain from the ribosome in the cytoplasm, usually in response to a termination codon. |
| poly(A)+ mRNA export from nucleus | The directed movement of poly(A)+ mRNA out of the nucleus into the cytoplasm. |
| protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
No homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| No homologous proteins | ||||
| 10 | 20 | 30 | 40 | 50 | 60 |
| MSTTLGQESK | TDWASLDSDE | EVQRISDKVN | QLNTSENKNE | DQKATNLSDR | LGPKITENVD |
| 70 | 80 | 90 | 100 | 110 | 120 |
| AKSEQDKATN | TIAEDANTKQ | SENDESNLIP | NKNEVRVKLA | DLQADPNSPL | FSVKSFEELE |
| 130 | 140 | 150 | 160 | 170 | 180 |
| LKPELLKGIY | SMKFQKPSKI | QEKALPLLLS | NPPRNMIGQS | QSGTGKTAAF | ALTMLSRVDA |
| 190 | 200 | 210 | 220 | 230 | 240 |
| SVPKPQAICL | APSRELARQI | MDVVTEMGKY | TEVKTAFGIK | DSVPKGAKID | AQIVIGTPGT |
| 250 | 260 | 270 | 280 | 290 | 300 |
| VMDLMKRRQL | DARDIKVFVL | DEADNMLDQQ | GLGDQSMRIK | HLLPRNTQIV | LFSATFSERV |
| 310 | 320 | 330 | 340 | 350 | 360 |
| EKYAERFAPN | ANEIRLKTEE | LSVEGIKQLY | MDCQSEEHKY | NVLVELYGLL | TIGQSIIFCK |
| 370 | 380 | 390 | 400 | 410 | 420 |
| KKDTAEEIAR | RMTADGHTVA | CLTGNLEGAQ | RDAIMDSFRV | GTSKVLVTTN | VIARGIDVSQ |
| 430 | 440 | 450 | 460 | 470 | 480 |
| VNLVVNYDMP | LDQAGRPDPQ | TYLHRIGRTG | RFGRVGVSIN | FVHDKKSWEE | MNAIQEYFQR |
| 490 | 500 | ||||
| PITRVPTDDY | EELEKVVKNA | LKM |