Q088K8
Gene name |
dapF |
Protein name |
Diaminopimelate epimerase |
Names |
DAP epimerase, PLP-independent amino acid racemase |
Species |
Shewanella frigidimarina (strain NCIMB 400) |
KEGG Pathway |
sfr:Sfri_0445 |
EC number |
5.1.1.7: Acting on amino acids and derivatives |
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q088K8
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q088K8-F1 | Predicted | AlphaFoldDB |
No variants for Q088K8
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| No variants for Q088K8 | |||||
No associated diseases with Q088K8
1 regional properties for Q088K8
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| active_site | Diaminopimelate epimerase, active site | 65 - 79 | IPR018510 |
Functions
| Description | ||
|---|---|---|
| EC Number | 5.1.1.7 | Acting on amino acids and derivatives |
| Subcellular Localization |
|
|
| PANTHER Family | ||
| PANTHER Subfamily | ||
| PANTHER Protein Class | ||
| PANTHER Pathway Category | No pathway information available | |
1 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
1 GO annotations of molecular function
| Name | Definition |
|---|---|
| diaminopimelate epimerase activity | Catalysis of the reaction: LL-2,6-diaminopimelate = meso-2,6-diaminopimelate. |
1 GO annotations of biological process
| Name | Definition |
|---|---|
| lysine biosynthetic process via diaminopimelate | The chemical reactions and pathways resulting in the formation of lysine, via the intermediate diaminopimelate. |
No homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| No homologous proteins | ||||
| 10 | 20 | 30 | 40 | 50 | 60 |
| MIHFTKMHGL | GNDFMVVDGV | TQNVFFSPEQ | IRRLADRNFG | IGFDQLLLVE | PPYDPDLDFH |
| 70 | 80 | 90 | 100 | 110 | 120 |
| YRIFNADGSE | VEQCGNGARC | FARFVRNKGL | TQKNKIRVST | NSGKITLRIE | RDGNVTVNMG |
| 130 | 140 | 150 | 160 | 170 | 180 |
| VPVIEPSQIP | FKAKKSEKTY | LLQTPMQTYL | CGAISMGNPH | CVIQVEDVQT | VNVDEIGSSL |
| 190 | 200 | 210 | 220 | 230 | 240 |
| TRHERFPKGV | NVGFMQVINP | GHIKLRVYER | GAAETLACGT | GACAAAAVGQ | LQDKLDKQVR |
| 250 | 260 | 270 | |||
| VDLPGGSLII | NWEGEGKPLW | MTGPAEHVYD | GQIQL |