Q06J18

PR
Gene name
rpoC1
Protein name
DNA-directed RNA polymerase subunit beta'
Names
PEP, Plastid-encoded RNA polymerase subunit beta', RNA polymerase subunit beta'
Species
Bigelowiella natans (Pedinomonas minutissima) (Chlorarachnion sp. (strain CCMP621))
KEGG Pathway
EC number
2.7.7.6: Nucleotidyltransferases
Protein Class

Descriptions

The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.

Autoinhibitory domains (AIDs)

417-492 (Predicted disordered autoinhibitory region) PR

Target domain

Relief mechanism

Assay

cis-regPred

Accessory elements

No accessory elements

References

Autoinhibited structure

Activated structure

1 structures for Q06J18

Entry ID Method Resolution Chain Position Source
AF-Q06J18-F1 Predicted AlphaFoldDB

No variants for Q06J18

Variant ID(s) Position Change Description Diseaes Association Provenance
No variants for Q06J18

No associated diseases with Q06J18

4 regional properties for Q06J18

Type Name Position InterPro Accession
domain RNA polymerase, alpha subunit 478 - 618 IPR000722
domain RNA polymerase, N-terminal 370 - 648 IPR006592
domain RNA polymerase Rpb1, domain 3 623 - 760 IPR007066
domain RNA polymerase Rpb1, domain 1 13 - 476 IPR007080

Functions

Description
EC Number 2.7.7.6 Nucleotidyltransferases
Subcellular Localization
  • Plastid, chloroplast
PANTHER Family
PANTHER Subfamily
PANTHER Protein Class
PANTHER Pathway Category No pathway information available

2 GO annotations of cellular component

Name Definition
chloroplast A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
DNA-directed RNA polymerase complex A protein complex that possesses DNA-directed RNA polymerase activity.

4 GO annotations of molecular function

Name Definition
DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
DNA-directed 5'-3' RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
magnesium ion binding Binding to a magnesium (Mg) ion.
zinc ion binding Binding to a zinc ion (Zn).

1 GO annotations of biological process

Name Definition
DNA-templated transcription The synthesis of an RNA transcript from a DNA template.

No homologous proteins in AiPD

UniProt AC Gene Name Protein Name Species Evidence Code
No homologous proteins
10 20 30 40 50 60
MNYYSIQNSR DSSISSIEIR ICSSKSIVKK SSRILPNGNI VGEIKTAQTM NYKTLKPENS
70 80 90 100 110 120
GLFCEQTFGP IKDFECACGK KYENEFIGFC AICGIEYASS QVRRNRLGYI KLVSPVVHIW
130 140 150 160 170 180
YLKYISILLD IPLKSIESIV YSTDGIIFKN FFQKPKKNQI LKKETFEITE NLNNTYFKDS
190 200 210 220 230 240
INLKYSLHVQ KNIISYLKNL KQAVFILKTK QDQQLKYNFS YLYYTLNNFY SLSYSFQWEA
250 260 270 280 290 300
KKQWNTIIWF FKYKQRMKEN FIKIDPLQKK LNDEYFEKTF LFGTSILYCW LKYFDYNFQL
310 320 330 340 350 360
LNLERQIRFT VFEIKEEIKE LSGILFSYFF QKQQFISFQK KIKKLNWKKN KVFRRLKLIM
370 380 390 400 410 420
YFRQAKLQPK WMILSSLPVL PPDLRPIVEL GSNKIAVSDL NKSYQTIILR NLRLKKFYNN
430 440 450 460 470 480
SAFNEFTEEI RYTKRLLQES VDELIQQDKS KKNNNISSKS LSDILKGKRG RFRQNLLGKR
490 500 510 520 530 540
VDYSGRSVII VDPELKLHEC GIPLKMAIEL FYPFIIQYLI SFNLTKTIPG AKHIIHTKAS
550 560 570 580 590 600
FLNEIIHFVL NNYLVLLNRA PTLHKLGIQA FKPKLVTGKA IKLHPLVCPA FNADFDGDQM
610 620 630 640 650 660
GMHIPLSFES RAESWKLLWS RNNLLLSSMG SPILTPGQDV VLGCYYLTSN LLDKVKTYIK
670 680 690 700 710 720
PCHLNKKGEN WSIYFNNLND VLKAYNQNKV NIHTEIWIKW SENIMFENNS LDLRRLEVYS
730 740 750
GKFFRFQYEN YQINYNLKGY QLSQYIKTTV GRVIFNSLLY