P60288

PR
Gene name
rpoC1
Protein name
DNA-directed RNA polymerase subunit beta'
Names
PEP, Plastid-encoded RNA polymerase subunit beta', RNA polymerase subunit beta'
Species
Physcomitrium patens (Spreading-leaved earth moss) (Physcomitrella patens)
KEGG Pathway
ppp:2546751
EC number
2.7.7.6: Nucleotidyltransferases
Protein Class

Descriptions

The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.

Autoinhibitory domains (AIDs)

194-272 (Predicted disordered autoinhibitory region) PR

Target domain

Relief mechanism

Assay

cis-regPred

Accessory elements

No accessory elements

References

Autoinhibited structure

Activated structure

1 structures for P60288

Entry ID Method Resolution Chain Position Source
AF-P60288-F1 Predicted AlphaFoldDB

No variants for P60288

Variant ID(s) Position Change Description Diseaes Association Provenance
No variants for P60288

No associated diseases with P60288

5 regional properties for P60288

Type Name Position InterPro Accession
domain RNA polymerase, alpha subunit 370 - 417 IPR000722-1
domain RNA polymerase, alpha subunit 425 - 510 IPR000722-2
domain RNA polymerase, N-terminal 259 - 540 IPR006592
domain RNA polymerase Rpb1, domain 3 515 - 653 IPR007066
domain RNA polymerase Rpb1, domain 1 6 - 368 IPR007080

Functions

Description
EC Number 2.7.7.6 Nucleotidyltransferases
Subcellular Localization
  • Plastid, chloroplast
PANTHER Family
PANTHER Subfamily
PANTHER Protein Class
PANTHER Pathway Category No pathway information available

2 GO annotations of cellular component

Name Definition
chloroplast A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
DNA-directed RNA polymerase complex A protein complex that possesses DNA-directed RNA polymerase activity.

4 GO annotations of molecular function

Name Definition
DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
DNA-directed 5'-3' RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
magnesium ion binding Binding to a magnesium (Mg) ion.
zinc ion binding Binding to a zinc ion (Zn).

1 GO annotations of biological process

Name Definition
DNA-templated transcription The synthesis of an RNA transcript from a DNA template.

No homologous proteins in AiPD

UniProt AC Gene Name Protein Name Species Evidence Code
No homologous proteins
10 20 30 40 50 60
MIHREKYHHL RIRLASPEQI RSWAERVLPN GEIVGQVTKP YTLHYKTHKP EKDGLFCERI
70 80 90 100 110 120
FGPIKSGICA CGKYQIIEKY SKFCEQCGVE FVESRVRRYR MGYIKLACPV THVWYLKRLP
130 140 150 160 170 180
SYIANLLAKP LKELESLVYC DLFLARPISK KPILLKLRGL FKYEDQSWRE IFPRYFSSRG
190 200 210 220 230 240
FEAFQNKEIA TGGDAIKKQL SNLDLQGVLD YAYIEWKELV EQKSTGNEWE DRKIQRRKDL
250 260 270 280 290 300
LVRRIKLAKQ FLQTNIKPEW MVLSLLPVLP PELRPMIELG EGELITSDLN ELYRRVIYRN
310 320 330 340 350 360
NTLIDFLARS GSTPGGLVVC QIRLVQEAVD GLIDNGIRGQ PMKDSHNRPY KSFSDVIEGK
370 380 390 400 410 420
EGRFRENLLG KRVDYSGRSV IVVGPFLSLH QCGLPREMAI ELFQAFVIRG LIGRHLAPNL
430 440 450 460 470 480
RAAKSMIQNK EPIIWKILQE IMQGHPVLLN RAPTLHRLGI QAFQPILIKG RAIRLHPLVC
490 500 510 520 530 540
GGFNADFDGD QMAVHIPLSL EAQAEARLLM FSHTNLLSPA TGDPVSVPSQ DMLLGLYILT
550 560 570 580 590 600
IKNHQGIYGN KNHPYKQNNN KIFLNKTPYF SSYDDVIKAY NQKKVRLHSA LWLWWGSKLR
610 620 630 640 650 660
TITSINREKP IEVQYNSSGI SFKIYEHYQL KKNKNEKNFS VYICTTVGRI IFNQQIEEAI
670
QGTLKASLFR NQSLPAITI