P57827

PR
Gene name
smpB
Protein name
SsrA-binding protein
Names
Small protein B
Species
Pasteurella multocida (strain Pm70)
KEGG Pathway
pmu:PM0217
EC number
Protein Class

Descriptions

The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.

Autoinhibitory domains (AIDs)

1-42 (Predicted disordered autoinhibitory region) PR

Target domain

Relief mechanism

Assay

cis-regPred

Accessory elements

No accessory elements

References

Autoinhibited structure

Activated structure

1 structures for P57827

Entry ID Method Resolution Chain Position Source
AF-P57827-F1 Predicted AlphaFoldDB

No variants for P57827

Variant ID(s) Position Change Description Diseaes Association Provenance
No variants for P57827

No associated diseases with P57827

7 regional properties for P57827

Type Name Position InterPro Accession
domain SNF2, N-terminal 420 - 713 IPR000330
domain Bromodomain 1063 - 1173 IPR001487
domain Helicase, C-terminal 737 - 903 IPR001650
domain Helicase superfamily 1/2, ATP-binding domain 413 - 602 IPR014001
domain Helicase/SANT-associated domain 256 - 328 IPR014012
conserved_site Bromodomain, conserved site 1089 - 1146 IPR018359
domain Snf2, ATP coupling domain 946 - 1012 IPR029295

Functions

Description
EC Number
Subcellular Localization
  • Cytoplasm
  • The tmRNA-SmpB complex associates with stalled 70S ribosomes
PANTHER Family
PANTHER Subfamily
PANTHER Protein Class
PANTHER Pathway Category No pathway information available

1 GO annotations of cellular component

Name Definition
cytoplasm The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

1 GO annotations of molecular function

Name Definition
RNA binding Binding to an RNA molecule or a portion thereof.

1 GO annotations of biological process

Name Definition
trans-translation A translational elongation process in which transfer of a translating ribosome from one mRNA to another RNA template takes place. Trans-translation occurs during tmRNA release of stalled ribosomes.

No homologous proteins in AiPD

UniProt AC Gene Name Protein Name Species Evidence Code
No homologous proteins
10 20 30 40 50 60
MTKKKVKVGT NTIALNKRAR HDYFIEDEME AGLELQGWEV KSMRAGKANI SDSYIIFKQG
70 80 90 100 110 120
EAYLFGATIQ PLNVASTHIV CDPTRTRKLL LKQKELASLF GKANRDGYTI VALSLYWKGA
130 140 150
WAKLKIGLAK GKKQHDKRED IKEREWKVTK DRIMKNARLG